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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0780800 |
| Transcript ID | LotjaGi1g1v0780800.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GDP-mannose 3,5-epimerase; TAIR: AT5G28840.1 GDP-D-mannose 3',5'-epimerase; Swiss-Prot: sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2; TrEMBL-Plants: tr|G7L1X0|G7L1X0_MEDTR GDP-D-mannose-3,5-epimerase; Found in the gene: LotjaGi1g1v0780800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135309210..135311472) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGAAGACATGTTCTGCCATGAGTTCCATCTGATTGATCTTAGGGTCATGGATAACTGCCTCAAAGTTACCAATGG TGTGGATCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGGGTTTATCCAGTCCAACCACTCTGTCATTATGTACA ACAACACCATGATTAGCTTCAACATGATTGAGGCTGGAAGGATCAATGGTGTGAAGAGGTTAGCTTCAACACTGAGTTTC TGTTTGTTGAGATAATTGAACATGCATGTATTTTGTGGTGTTAGTGTCAATTACTTATCCATGGCACAATCATTGTTTTC AGGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAGCAGCTGGAAACTACCAATGTCAGTTTGAAGGAGGC TGATGCCTGGCCTGCTGAGGTTTGTTGATGATCTTTTTAATTGTTTGGCTCGGTTATGTTGGTTATTATTCATTCGTGTG CTAGGGTTAGGATGAATGTATTTAATTTTATGACTTTTTGTAGCCACAAGATGCATATGGTCTAGAGAAGCTTGCAACAG AAGAGTTGTGCAAGCATTATAACAAGGATTTTGGGATTGAGTGCCGAATTGGGAGGTTCCACAACATTTATGGCCCTTAT GGGACATGGAAAGGTACGCTCTTTACTGAATTGCTAGTTTTACAGTTGACTTGTCTAACTCAATAATTGAGCAGACATTG TTGTTTTTTGTAACTTTTAGACTTAAGAAGTTTGTTGCTTTGTTGTTTGTCCTACAGGTGGAAGGGAGAAGGCTCCTGCT GCTTTTTGTCGAAAGGCGCTTACTTCTGCTGACAGATTTGAGATGTGGGGAGATGGATTACAAACAAGATCCTTCACCTT TATTGATGAGTGCGTTGAAGGCGTACTTAGGTATGACTTTACTGATTCTGTGGCTAATGCAGCTAAATTAATGATTTCTT TGTAGGGCTTCTCATTTTGAAATCTAAACTATGGATTTGTATTTTATTGAATGGTGAAAATGGAACTAGGGGATAGCATT TTTAGTTGCCATTAATAATTTCTGTTAATAGTTAGTTGCAGATGTAAATGATTGTAATATCTCTATTTATTCTGAAATTG CTCATGATGTTTAAGTTGATTTGTTTCAATTTTCAAATTTTGTGAGTTTTTTTTTGTTAGATCCAGCTATTAAAGACTGG GACTTTTAGAAATAAACATTATTAGCAAAATAACAAGGATACAAACGTGTGGACATGAACACACACAACATGTAAAACAT GGGAAAACTGGGACACAATGTACATAGACATATCTGCGCGTGTATATCTGCCATATTAGTTTTTGGAAAGAGTTAATCTT GACCATATTTACATGGTTGGATGGTATGCCCTGGCCTTGTGTGTGTGTGCGCGTGTGTGTGTGTTATTGGTACAAGGATG AGTAGAGGAAGGTGCAACAAACCCAAATGAAATATGTTGGAGATCTTTCTGAAACACATAACACTTTCTAACTTGTATAT TTAAGTTGATTCTTCTGAAAGTTATTAAAAAACATAATTTTCAAATTTTGTTATAGTTGTGTGCGAGTGTTGAGTCTTAT TTGAGTATCCTCTAAATGGTAAGAAGAGTTTGATGCCTGTCTAGCCTATAAAAATGATTATTTCAGTAGCACACTTTATG ACGTGTAGCCTGCATGTGTTGTATGGGTGTTGCTGTTGGAAATTTGTCCGACAGTCAGACACCACAAGAAGGAGAAGAAT CTGTAATAGGACTCTGGTGCCTTTACAAAACTTAATATTTGTCTTATTTGGTTGTTGGATCAAGCATATATTAGCTTCTT TTATGTCTTTTGGTTAGTTCTTATTCCTTGGTAAGACTTATCATTGGTGTTCCTGGTCCACCTCTATGTGCAGATTGACT AAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGACATTGTGCTTGG CTTTGAGAACAAAAGCACACCAGTACACCACATTCCTGGCCCAGAGGGTGTCCGAGGCCGTAATTCAGACAATACACTAA TCAAAGAGAAACTTGGCTGGGCTCCAACAATGAAGTTGAAGGTATTAATGTTGTGAAAATCCCCTTGTTTCCTTTTTATA CAATTTATATCTAGTTCTGAGTTCATTTAATTCAGCTTAACGCTGTTCTACAATATGAATTCTCCTTTTGTTATGTCTTA ATAACTTTCTACTACCAATTTGA
CDS sequence (LotjaGi1g1v0780800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGAAGACATGTTCTGCCATGAGTTCCATCTGATTGATCTTAGGGTCATGGATAACTGCCTCAAAGTTACCAATGT CCAGTCCAACCACTCTGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGGAAGGATCAATGGTG TGAAGAGTTTGAAGGAGGCTGATGCCTGGCCTGCTGAGCCACAAGATGCATATGGTCTAGAGAAGCTTGCAACAGAAGAG TTGTGCAAGCATTATAACAAGGATTTTGGGATTGAGTGCCGAATTGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCG AAAGGCGCTTACTTCTGCTGACAGATTTGAGATGTGGGGAGATGGATTACAAACAAGATCCTTCACCTTTATTGATGAGT GCGTTGAAGGCGTACTTAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTCAGCATG AATGAGATGGCTGACATTGTGCTTGGCTTTGAGAACAAAAGCACACCAGTACACCACATTCCTGGCCCAGAGGGTGTCCG AGGCCGTAATTCAGACAATACACTAATCAAAGAGAAACTTGGCTGGGCTCCAACAATGAAGTTGAAGTTCATTTAA
Protein sequence (LotjaGi1g1v0780800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEDMFCHEFHLIDLRVMDNCLKVTNVQSNHSVIMYNNTMISFNMIEAGRINGVKSLKEADAWPAEPQDAYGLEKLATEE LCKHYNKDFGIECRIGGREKAPAAFCRKALTSADRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSM NEMADIVLGFENKSTPVHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 56 | 56 | 1.5E-122 | – | |
| PANTHER | 1 | 56 | 56 | 1.5E-122 | – | |
| Gene3D | 2 | 205 | 204 | 3.0E-50 | – | |
| SUPERFAMILY | 25 | 207 | 183 | 3.16E-31 | ||
| Gene3D | 26 | 209 | 184 | 3.0E-50 | – | |
| PANTHER | 56 | 209 | 154 | 1.5E-122 | – | |
| PANTHER | 56 | 209 | 154 | 1.5E-122 | – | |
| Pfam | 62 | 153 | 92 | 1.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi1g1v0780800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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