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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0780800 |
| Transcript ID | LotjaGi1g1v0780800.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GDP-D-mannose-3,5-epimerase; TAIR: AT5G28840.1 GDP-D-mannose 3',5'-epimerase; Swiss-Prot: sp|Q93VR3|GME_ARATH GDP-mannose 3,5-epimerase; TrEMBL-Plants: tr|A0A072VLZ2|A0A072VLZ2_MEDTR GDP-D-mannose-3,5-epimerase; Found in the gene: LotjaGi1g1v0780800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135309363..135312185) extracted from Lotus japonicus Gifu genome v1.2.
ATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGGAAGGATCAATGGTGTGAAGAGGTTAGCTTCAACACT GAGTTTCTGTTTGTTGAGATAATTGAACATGCATGTATTTTGTGGTGTTAGTGTCAATTACTTATCCATGGCACAATCAT TGTTTTCAGGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAGCAGCTGGAAACTACCAATGTCAGTTTGA AGGAGGCTGATGCCTGGCCTGCTGAGGTTTGTTGATGATCTTTTTAATTGTTTGGCTCGGTTATGTTGGTTATTATTCAT TCGTGTGCTAGGGTTAGGATGAATGTATTTAATTTTATGACTTTTTGTAGCCACAAGATGCATATGGTCTAGAGAAGCTT GCAACAGAAGAGTTGTGCAAGCATTATAACAAGGATTTTGGGATTGAGTGCCGAATTGGGAGGTTCCACAACATTTATGG CCCTTATGGGACATGGAAAGGTACGCTCTTTACTGAATTGCTAGTTTTACAGTTGACTTGTCTAACTCAATAATTGAGCA GACATTGTTGTTTTTTGTAACTTTTAGACTTAAGAAGTTTGTTGCTTTGTTGTTTGTCCTACAGGTGGAAGGGAGAAGGC TCCTGCTGCTTTTTGTCGAAAGGCGCTTACTTCTGCTGACAGATTTGAGATGTGGGGAGATGGATTACAAACAAGATCCT TCACCTTTATTGATGAGTGCGTTGAAGGCGTACTTAGGTATGACTTTACTGATTCTGTGGCTAATGCAGCTAAATTAATG ATTTCTTTGTAGGGCTTCTCATTTTGAAATCTAAACTATGGATTTGTATTTTATTGAATGGTGAAAATGGAACTAGGGGA TAGCATTTTTAGTTGCCATTAATAATTTCTGTTAATAGTTAGTTGCAGATGTAAATGATTGTAATATCTCTATTTATTCT GAAATTGCTCATGATGTTTAAGTTGATTTGTTTCAATTTTCAAATTTTGTGAGTTTTTTTTTGTTAGATCCAGCTATTAA AGACTGGGACTTTTAGAAATAAACATTATTAGCAAAATAACAAGGATACAAACGTGTGGACATGAACACACACAACATGT AAAACATGGGAAAACTGGGACACAATGTACATAGACATATCTGCGCGTGTATATCTGCCATATTAGTTTTTGGAAAGAGT TAATCTTGACCATATTTACATGGTTGGATGGTATGCCCTGGCCTTGTGTGTGTGTGCGCGTGTGTGTGTGTTATTGGTAC AAGGATGAGTAGAGGAAGGTGCAACAAACCCAAATGAAATATGTTGGAGATCTTTCTGAAACACATAACACTTTCTAACT TGTATATTTAAGTTGATTCTTCTGAAAGTTATTAAAAAACATAATTTTCAAATTTTGTTATAGTTGTGTGCGAGTGTTGA GTCTTATTTGAGTATCCTCTAAATGGTAAGAAGAGTTTGATGCCTGTCTAGCCTATAAAAATGATTATTTCAGTAGCACA CTTTATGACGTGTAGCCTGCATGTGTTGTATGGGTGTTGCTGTTGGAAATTTGTCCGACAGTCAGACACCACAAGAAGGA GAAGAATCTGTAATAGGACTCTGGTGCCTTTACAAAACTTAATATTTGTCTTATTTGGTTGTTGGATCAAGCATATATTA GCTTCTTTTATGTCTTTTGGTTAGTTCTTATTCCTTGGTAAGACTTATCATTGGTGTTCCTGGTCCACCTCTATGTGCAG ATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGACATTG TGCTTGGCTTTGAGAACAAAAGCACACCAGTACACCACATTCCTGGCCCAGAGGGTGTCCGAGGCCGTAATTCAGACAAT ACACTAATCAAAGAGAAACTTGGCTGGGCTCCAACAATGAAGTTGAAGGTATTAATGTTGTGAAAATCCCCTTGTTTCCT TTTTATACAATTTATATCTAGTTCTGAGTTCATTTAATTCAGCTTAACGCTGTTCTACAATATGAATTCTCCTTTTGTTA TGTCTTAATAACTTTCTACTACCAATTTGATCACTCACATTCGAAGTAATGGAATGAGATATACTCATCGACATAGTAGA CTCAAACCAAATTCCTTTTTTACCTCACCACCACTTTAATGTTCAATTTTGTAGTTCCCAGAATTTGAACTAGGTCTAGC TCTACCTTGAAAACTAGCTCAGGGGTGAAGATTGATGTACCCTATATAAAGACTTATTTAGCCATATCTCTCTAGTCAAC GTTGGACTTTAACACACACCCCTCTCACCCAGATATCTAGAGCATGAAGTTTGCAGGTCTAGACATTTGCAATGAGCCAT TTATGGCTGATATCCAATAAATGGATCTCCTCTTCTATACTGTTTCTTGTGTTTCTATCCTCTTGCTTTTGTAAATTGGC TCAATCAATAATAGGATTATGGGTTTTATTTATGGCATCTCAATTTATGTATTGCTATCTTATCTGATTTTTTTGTTTAT TGCAGGATGGGCTGAGAATTACATACTTTTGGATCAAAGAACAGCTTGAGAAAGAGAAGGCCAAAGGTGTTGATACAGCA ATCTATGGATCTTCCAAAGTAGTACAGACTCAAGCCCCAGTTCAACTAGGCTCACTCCGGGCAGCAGATGGCAAAGAATG AAGTGAGCAAGTAGTCATAATCACCTAGGTGTTTTAAGTGGAGGGTTGACTTTTTATGCTGCTATTTTTTAGAGATCTTT GGATATGGTTAATTAGCTATTGA
CDS sequence (LotjaGi1g1v0780800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGGAAGGATCAATGGTGTGAAGAGGTTTTTTTATGCCTC TAGTGCTTGTATCTACCCTGAATTTAAGCAGCTGGAAACTACCAATGTCAGTTTGAAGGAGGCTGATGCCTGGCCTGCTG AGCCACAAGATGCATATGGTCTAGAGAAGCTTGCAACAGAAGAGTTGTGCAAGCATTATAACAAGGATTTTGGGATTGAG TGCCGAATTGGGAGGTTCCACAACATTTATGGCCCTTATGGGACATGGAAAGGTGGAAGGGAGAAGGCTCCTGCTGCTTT TTGTCGAAAGGCGCTTACTTCTGCTGACAGATTTGAGATGTGGGGAGATGGATTACAAACAAGATCCTTCACCTTTATTG ATGAGTGCGTTGAAGGCGTACTTAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTC AGCATGAATGAGATGGCTGACATTGTGCTTGGCTTTGAGAACAAAAGCACACCAGTACACCACATTCCTGGCCCAGAGGG TGTCCGAGGCCGATGGGCTGAGAATTACATACTTTTGGATCAAAGAACAGCTTGA
Protein sequence (LotjaGi1g1v0780800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNNTMISFNMIEAGRINGVKRFFYASSACIYPEFKQLETTNVSLKEADAWPAEPQDAYGLEKLATEELCKHYNKDFGIE CRIGRFHNIYGPYGTWKGGREKAPAAFCRKALTSADRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMV SMNEMADIVLGFENKSTPVHHIPGPEGVRGRWAENYILLDQRTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 198 | 198 | 9.3E-131 | – | |
| PANTHER | 1 | 198 | 198 | 9.3E-131 | – | |
| Pfam | 1 | 155 | 155 | 8.8E-30 | ||
| SUPERFAMILY | 2 | 195 | 194 | 7.99E-42 | ||
| Gene3D | 60 | 147 | 88 | 1.1E-28 | – | |
| Gene3D | 148 | 201 | 54 | 3.8E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi1g1v0780800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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