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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0780900 |
| Transcript ID | LotjaGi1g1v0780900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding EF hand protein, putative; TAIR: AT5G28830.1 calcium-binding EF hand family protein; Swiss-Prot: sp|A7MY25|PUR5_VIBCB Phosphoribosylformylglycinamidine cyclo-ligase; TrEMBL-Plants: tr|I1NC93|I1NC93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0780900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135319921..135323685) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATTCAATTCAATTCAATTGGATACAAAAGGAAGAAGAGCTCGCTTTGAAGTCTTGTTCTCTTCTCTTCTTCCTTT CTCGCAGACGCAGAGTCCAAAATGTCAGACGGAGCATTGCAAATACTCGACGGAACTCACCTCCGAAACCTCGATCTATC CCTCCCCGACGACCCCACACTCACCGGAGCTCACATACTCGACATTGCCCACTCCCGAGTCTCCGCTTCCCTCTTCGCCC TCCCTTTATCTGACGCGCTCAAAGCCTCCGCACTCACGCGCCTCCACCTCCCCGACGCCGACGCTTTCCTCTCCGCCGAG TATGACCACGACAAGGCCGCTGAAGTTCTCAGAGACTACATCGCCGCCATCGCTGATGAACTCAAAGGTCTGTTAATCGT TATCTTCTTCTTCTCCTGCTGTTTGCTGATGCTTGCATTATAGGTCTACGAACTTGTTGAATGAAGTGCGAACTAGTTGT TGTTATTGCTGAGATTGATTTTACCATTTTCTCTCAAGATCCATAGACAGATTAGATCATCAATTCAACACGTGATTCTC AGTGTTTTTACTATTTTTTGTTCAGTTCGAATTGCGAATCAGTAATTTTCATCCATGAATGTGTTGATCTCCCCCTTTGT CAAAGCAGAAAATTGTTGTGTTTTTCGTTTGATCAAATTTGATTGGAACATGATGTGGATTGGTGGAATTTGATTTTATG TTTTTAGGGGAAAAAAAACAAATTACTGTGCATGTTTGCATATGAAACATTGTAACATAGTTCAGCTTGTGGATAGGTTT TACATGGAGTATTTAATCTGTGCTTTGTAGGGAAAATAGTTAGTTCTTATCATTTTGATGAGAAAAATTACTGATTATAT TCAAATTTTATATCTACAGATAATCCTATTGTTGCATCAATTTTGGATGGAAGTACCATTAGTTTGCTGTTAGAGGATGA GGATGATTTTGCCATGTTGGCAGAAAATCTGTTCACTGACTTAGATGTTAAGGATAAGGGGAAAATCAGCAAGAGTGAAA TTCGGAATGCTCTCGTTCAGATGGGAGCTGAGATGGGTGTTCCTCCTTTCTCAGGTTCACTTTATTTTCCAGTTGGAAGA ATTTTGTTGTTGTTTGCTATATTTTAGTTCTTGTTTCCAATTGAATTGGCTTGGAATACCTTATAATTATTTTGCAGGAA GCCTTGCTGTTTTGTGTGTATTAATATATTTGATTATTACTTATATTGTGTTGCTAGAACTGTGAAGATTAAGATGTAAA GCATGACAGTTCACAAATTCCAGTTTCATCTAGATTAAGGTGCACTTTAGGCCTCATCCTCTTCTATGGAGTGAAAATAC TATCTTAAAATAATCCACTGGATGTAATTTACACTTGTCAAAATCAAAGATGTACTATAATTTGTTTTGTTCGTGGAACT TTTTCCTTCTATAATCAATAGGTTTCTGCTCTATGCTCACTCTTTCTTTTTCTCTTTTGAATTTTCATGGTCAAGTTTAT TAGATTGATTGAGGAAAGTAATATAATAGTGTTTCTATGATAAACAATTAATTTCTTGATTTTAGGTTTCTTTGGTGGAT TTGTAGTATCAGAATGGTATTTCTAATTGAGCTGCAGTTTTAAGAAGAAAATGCACTAACCTGCACAAGGTTCCAAAAAT ATTATGTCTAGGAAAAAATTAAATATTTTATCTTGACCTAATTAATTCCCTTAGGTATATCATTTGTCTATAATCTGCTT AGAATTTGTTGAATTCATTGACTACAGATCAGAGTTTGCATCACACCAGACCTTTCAATGACTTAATGTAATGAATCCTG AAAATAGATTCCAATTGTGCCAAATCTTACTATAACTACCAAATAATGGTGGTTTTGATCTCTCATTCCATTATATCACA TTGTGAGTCAATTGCCAAAATGTACAGCTAAACTTGGAAAAAGATGTTGATCCTTTGGATTGCCTCAGATATTTGTTATT CACCAGTAGCTTCTACATTTCTTCCTTTTCACCTCAAATAAATGAGACTTTGACGTCCTCTTAAGCATGTATGCTATGCA ATATGACTGTAACTTTATCTCCTTGGGCTGATTGTTTGTCATTGTATTTGTCACATACTAGTTGCCAATATTGCACATGG TTTGATTAACCGTGGATATATATTTATATAATGTATGTTATTTTATGTTTTTAAATGGGATTCTATACATCATAATACTA CTATTTGAGATGCACAAAGCCAAAATGGGTTGGCACGAACCGGAGTTGAGTCTCACCTTCCCAAGGGTGATTCAATTACT CCAGCAGCCTTTAAAATCCCAAGTTTGTGGACAACCCTTTCCAGGGAGATCCCTTTGCGCTCCAGGGCTAGTTGAGTAAT TGGGCTCAGTGAACCCACTTGCGGTAGTAGTGGCCCAGTAATCCTTGGAGTGAGTCTTTGCTGGTCTCCTAACATGCTAT TCGCGCCTTGTTTGGTAGGGCCTGGAGGTGCCACTCCTTCCTACCATTTTCGGTCATGAATTTTTTTTGGAGATGCACAC ATTTGTATCTTTTTAAAGGAAATTATGACTTGTGTTTTCCATTACTTGAGACTGGCTTTATTGTGTGATATGCATGATTT ACTTATGTTGTCAGTGCTACACATGTTAATTTTCCTGGCTTGATTAAACTGATTTTTAGTATCAATGAGCAGAATTTCCT CTGCTAAATGACATACTGAAAAAACATGGGGCGGATGGAGAAGAAGAGTTGGGCCAGGCCCAATTTGCACAGCTTCTGCA ATCTGTCTTGCAAGATCTGGAACCGGAACTTTCCAAAAAGAATGTTGTTGTCGTCCAGAATATACAAATCATAAATGGCT CTAAGCTAAGACAGGTATTTTCTATAATTTATTCAAAAAAATATTAAATTTCAATCTTATATGATTTTTTTTATGTCTAT GTCATAGTATCTACATCTTGTAAAATTGACTAGTTATCTTCTTAGCTTATAGCAAAGTACTTTAACATCATAACAGAAAA AAAAACCTAAAAAGTACCATTTCCACTCCCCACCATTGTTTGAGACAAAGTTAATAAATAACTCCATTTATTGTTGTGCT TTCTGTGACATCTTTGATCTTTCAGCCCAGCCAACTCTTATTTATCAATTTATGTTATGGATGCAGTTATTGGCCAATGA ACCAGAGTTAAACAGCATTGTGGAGAGGGCATTGCAGGAAAAACCCGAGCCAGCAGATGGCTTGGGGAGCACAGAAACAA TAATAAGAGGCTTCCTTGAGAAAAACGCTAAGGAGTTGGGTTTACCACTATCTGAAGCTGACAGTGCAGTTGCTCTTCTT TATGATACTGTTTTTGCTGATGTAGTAAAAGAAAAAGATGGTGAAGGTTTAGATAAAGAAGAGTTGGCAAAACTTATGAA GGATGTCCTAGAGAAATTTGCAGAGCAACTTGAGTTTAATCCTGTTTATCAGGACTTCCCTTGAGGCTGGTGAATTATTT TGGTCACAATTCACATTTAGTATTTCATGTGTGAAACTCTGTATCTTTACAAAGATTTGGGGTTAGCATCCCCTGCAGGA AAATTCCAGTAGTGTTATACTGTATAATGAATTTTACATATGACAGGCACCTTAAATAACATGCTTATATGATATGATGT TATGAATTTGAATTGTTACTTGATTATCAATTTAGTTTTTTCCAACTTTTACTACATTGACATCAATATCCGAATTTAAA GTTAT
CDS sequence (LotjaGi1g1v0780900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGACGGAGCATTGCAAATACTCGACGGAACTCACCTCCGAAACCTCGATCTATCCCTCCCCGACGACCCCACACT CACCGGAGCTCACATACTCGACATTGCCCACTCCCGAGTCTCCGCTTCCCTCTTCGCCCTCCCTTTATCTGACGCGCTCA AAGCCTCCGCACTCACGCGCCTCCACCTCCCCGACGCCGACGCTTTCCTCTCCGCCGAGTATGACCACGACAAGGCCGCT GAAGTTCTCAGAGACTACATCGCCGCCATCGCTGATGAACTCAAAGATAATCCTATTGTTGCATCAATTTTGGATGGAAG TACCATTAGTTTGCTGTTAGAGGATGAGGATGATTTTGCCATGTTGGCAGAAAATCTGTTCACTGACTTAGATGTTAAGG ATAAGGGGAAAATCAGCAAGAGTGAAATTCGGAATGCTCTCGTTCAGATGGGAGCTGAGATGGGTGTTCCTCCTTTCTCA GAATTTCCTCTGCTAAATGACATACTGAAAAAACATGGGGCGGATGGAGAAGAAGAGTTGGGCCAGGCCCAATTTGCACA GCTTCTGCAATCTGTCTTGCAAGATCTGGAACCGGAACTTTCCAAAAAGAATGTTGTTGTCGTCCAGAATATACAAATCA TAAATGGCTCTAAGCTAAGACAGTTATTGGCCAATGAACCAGAGTTAAACAGCATTGTGGAGAGGGCATTGCAGGAAAAA CCCGAGCCAGCAGATGGCTTGGGGAGCACAGAAACAATAATAAGAGGCTTCCTTGAGAAAAACGCTAAGGAGTTGGGTTT ACCACTATCTGAAGCTGACAGTGCAGTTGCTCTTCTTTATGATACTGTTTTTGCTGATGTAGTAAAAGAAAAAGATGGTG AAGGTTTAGATAAAGAAGAGTTGGCAAAACTTATGAAGGATGTCCTAGAGAAATTTGCAGAGCAACTTGAGTTTAATCCT GTTTATCAGGACTTCCCTTGA
Protein sequence (LotjaGi1g1v0780900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDGALQILDGTHLRNLDLSLPDDPTLTGAHILDIAHSRVSASLFALPLSDALKASALTRLHLPDADAFLSAEYDHDKAA EVLRDYIAAIADELKDNPIVASILDGSTISLLLEDEDDFAMLAENLFTDLDVKDKGKISKSEIRNALVQMGAEMGVPPFS EFPLLNDILKKHGADGEEELGQAQFAQLLQSVLQDLEPELSKKNVVVVQNIQIINGSKLRQLLANEPELNSIVERALQEK PEPADGLGSTETIIRGFLEKNAKELGLPLSEADSAVALLYDTVFADVVKEKDGEGLDKEELAKLMKDVLEKFAEQLEFNP VYQDFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 325 | 325 | 4.6E-144 | – | |
| PANTHER | 1 | 325 | 325 | 4.6E-144 | – | |
| ProSiteProfiles | 118 | 153 | 36 | 9.66 | ||
| SUPERFAMILY | 124 | 306 | 183 | 7.67E-7 | ||
| ProSiteProfiles | 275 | 311 | 37 | 7.288 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0780900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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