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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0783600 |
| Transcript ID | LotjaGi1g1v0783600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT5G03970.1 F-box associated ubiquitination effector family protein; Swiss-Prot: sp|Q94A64|FB251_ARATH F-box protein At5g03970; TrEMBL-Plants: tr|K7N055|K7N055_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0783600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135665569..135670014) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAGGTACCTCTTTGGTAACAAGAAATTAGAAAAAATTAATCAAAACAATTTTTGTTGGGTCCCAAACCCAAGACAA CCCAACCCGATGAGAGCAGGCCCAACCAAACCAAATTAATTTCAAAAATTGTTTTCCCGACATCAAACAACTCGGTTCAT AGTTCGATCGACAACCATGCGCACTCACTCAGCTCTGGACCCAGAAATTTGAACTGTGAGTGATTTCCTTCCTGTTTTCT GCTAAACCTCATTCAATGTTTCGTTTTTGCTTGATGAGTCTGCATTCCATTTTCATGTGCTCTTCATTTTCAGTTTTTGA TTTTTTTTTTCCAGAAGGAATAGGATCGTTGTTCATAGGTTTTAATCAAATGCATGCATGTTTCATCAACGATGCTGAGA AAACGCTTCTGATTAGTTGATTATGTGGTGATTTAAGAAATGGGTTTCCTGCTGATTATGTTGGTAACTGCATAATAACC CCAAAACCCCATTCTCACTTTCAACTGATATATACTGATACTCATGTTTTCTTTTATGACCATTATCTAATAGACTTGAT GACATGTATCTGTCTAAGTGCATGTTTGGAAATATTGATTTTGAATGCCAAATCAATTCTGGGTTGAAGGTTCTGTGAGT AGTTTCTGGGTGTCAGTATTGATTTTGAGGAAATATAAGCTGATCCAAACCAGGCTTGTTAATAGCGCGCTATAGCGGTG CAATAGCCTATAGCGTAGCACCCTAGGGGTTCACCGCTACGCCACTATTCACCGCTATTTGTCGCTATAGCGCCGCAATA GCGCTCGAAATAGCGTTTTTTGGGTTTGCCGCTACACTACGCTATCCGCCATTGACAACCCTGATCCAAACATGATATAA GTTAAATTTAAGTAAGTTTTACTTCAAGTGTCTCCGTTGAGAAGTCCTAACTAGAGATATGGTCAAGATTAGGGGTAGAG TTATGGGGTTAGGCCTCTCAAATTCTTATAGTCTCAAATTTAATGGGTTTGAATTTTAAATGACAGTTGTGAAATCTAGA CCATTTGTGAGCTATGGGGTTACTTTTTTTGTTTTCCTTCTAATAAGTGAATTAGCTTATGTTATCCATTATCAATTAAG ATATCTATGTTCTTCTTGTCAGTATTTCTGAAGATTTAGTTGGCATATGCTTAGCAGAGGATATAACTTGCTCAACAGAA TTTGAGAGGATGAAGAGGCGTAAGAGTGTTTATGCTGTGCTTAATTGTGATGACATCCTGCATGAGATCCTGCTTCGACT GCCACCGTCAACTATCTTCAAGTTAATTGTTGTGTCGAAAATATGGCTGCGTGTGATATGCAGTTCTACATTTCGTCGCT GTTACTTGAGTAAGTGGGGACAAGATTTTCGACTTCTGGGTTTTTGTGTATGCAACTTTTTATATCTTGGAAGACCGCGT GATGGCTACCGCCGCCCTCGCTCGGAGCCTGCCCTTCCATTCTTGTCCACTTGCAAAGAGGGTGATGATTTGCAGCTTTC AGGAGTCCTAAAAAAACTTGGGTACTTCATTGATTGTTCCAATGGCATTATTCTTTCTGGTTTCCATCCAAAGACATTCT ATGTGTACAATACCATGACCAAGCAACGGCATGAACTCCCAGAACCTCAGCAGTTCTATAAAACTCTCTGCATGGCGTTG ATTGTTGAGGAATATGTTGACGGTGACATTTGCTACAAGGTGATCCGCGCAAGATGTGAACACAAACTTAAGGAACGCAA CACTCTCTCAGTTGAGACTTTCTCATCTAAAACTGGAAAATGGAAGCAGTCCACTCTGCTGTGCTCTTCGTCTTTTGCGC TGCGCCCAAAGACAGTAGGTATGGTGGTTGGGGGAGTTGTACACTGGTTTGCAATGTGGGGAAAACTTGCCATCTATGAT CCCCGTCTTGGAGACAGGAAGGTTGCTTTAGTTAAACTACCGGCTGGTGCTTTATCGCTCGAGCATGAGGAGTCTGTTCT TGGGGAGTCGTCTGATGGGCTCTTGCTGTATGGTCAGAGCAACAACTTGGGTCTGGAGATATGGGTACTCGAGAAGGAAG CAGGAACCAACCCATCCATGTACAGCAACTGCACTCATTTGAGCTACAAGTGGATTCTAAGGTGGAGATTGAGTTTTAAA GAATTATGGAAGCAGATACCAACTTTAAGCATGCATTTTAAGGAGGGCCAGATTTTATCATTTCTTCCTCAGAATTCTAC ATCTGTCTACATCAGAATGGGGTGGAACATTTTACTGTGTGATTTGAAGACCAAAACAGTGGAAATAGTTAATTATCAGG GTCGTGGAACCGCCATTTCATGGGAATCTAGCAAAGTTGTTCCTTTCTTTCTGCCTGCTTGGCCATTCTCTTCATCTATG GCATGACTGCATGGAACATAATTTCTGTTAAGTGGAGGAAACCTTGTCTTTTTGATACTAGATGGTACTAGCGGTTTTTT TCCATTTCGTTGTTAATCTGGATGCAATGTAACTAAAGCACTTGAACTCTTCGGTTCTCTTTTTGTAGTATAGTGGCCTA GATAACTTTTTTTCCATAGCTCCAGTGATGTATATACTGAAAGCATATTATTGCTCCTCTGATCTTCGTTCTCCTTAGTC TACTTGCATAGAAGATTTGCAGCTGGAAACCAGGTCTAAGAATTCGAAAATCTGAGAGCTTGCATTTTATGGCTTAAAAT GATGGTTCACACAACCCTCTTATTATGACAAGCATAGCGCGACACCATAATAATCTACTTGTAATTATTGAGGATCAAGC TAATTGGCACGAGACAGTGTGAGATTAAGACGCACGAATGAATATCAGCCGCTTGATTGAATGACTGACTCTTACATGAT TTTTTTCATCTCTAATAACATTGATATTATGGAACGGTAAGTATCATTTGTCTATGAGGTGTGCGCATTGGCCTGAGATG AAAATGTGAATGGGAAAAATATGAATACCTAAATGGGGAGAGATGAAAATGTGAATAACTAAATCTAGAAACTAAAAATT TCCATGTAAATAAGGTCTTTAGCTGACACACATTGTGGGCCACGGATAGCCATCATTTATTTCTGTATTGGTGAATGAAA TTCCTATACCTCTTGCCCTCTAGTTACAAAATCTCCACTGACCACTATGTCATCCCTTTTCCAAACTATTGACAAATGAA TTTATGTTAAATATAATATTCTTTATGATGTAACTTCACTACTTAAGTGAGGGAAAAAAAAATCATTTCCCCATCAATTC TGCAATGAAGCTGTCAGTCTGCACGGGGCAACAAGAAACTAAAGCCAGAGTTGTCTCGAATTAGTGGTGGAGGCTCTACA TCATATATATCTATCTGTTCCTTTGACTTTGATATGTCATCCACTGAAAACGGAATGCTGCAAAGTAGATGATGCTTCCA AATGGTTAATGATAAATGTAAGGTCAAAAGTATATATTAACAACTAGAAACAGTGAATCAGTGTTGATGAATCAGTGTTG AGTTTAACGGAAATCTAAACATCTACTCAAATCAGATTCTTTTTGGCGAAAAGTTTGGTTCAGTCAATGTGTAGCCAGAA GTTGATAGTTAGTATAAGAAAATTTAGTTGAAGTCATCATCCTAATTACTAAGAGCGGTCAAGTAGTGGATGTCTGACTA GAATTGAAGTCATGGAGCACCCTGCATAGCTCTTGCCAAGTTTTCATATTTACTTTGTATGTGGTCATAACTATAACCTC ATTACCAAGAGTGATTTGGTTACAAAACTAACTAATTGTGTATACAATACAATATCAATGTGCGTTTATAAAACAAGATG AAAACCTGAGCAAAGATTACTACGTGGTTGAATAGTATCCAACTTACCTTGAATCATCATCCAACAGGAAAGAATTACTA ACTGCATTATTTGAATCTTCAGTCATCAAGACTCGCATATTAGAGATGACCTAGATGAAAACATTGATACAGCAAAGCTC AAGATAGGTTTTTCGCATGTCTTTGATGTGTAGTGTTGAAGTTATCATATTTGAGTAATGGTTTAATGTAAAAACTTACA TCAGGGGACACGCTATGCGTGCCATACTTGTCATCCCAGTACATGGTGCTAATTCGATATAGCTGCTGTATACTGAGAAC CTGTGAACAGGGAACTAACAAATGTAGGTATTCAGGAAAGTGAAATTTTCAGTAAAAAGCCAGATTTCTTCCACTTACCG GGCAAAGGTCATGGCTTATTTCATCCAGCGTTTTCTTTGGTTTCTGGTGTATGACCTAAATTAAGGGGCAGGAAAGATCA GTTTTTTATATTTTATTATCCACCACAAGTACCTTACAGATGGTGTAAAGACATGATAGACAGATACCAGAAATCCAATA GCTTGTCTAATATGTTTGAGCTCATCCCACGCTGAACCTGCATACT
CDS sequence (LotjaGi1g1v0783600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGCGTAAGAGTGTTTATGCTGTGCTTAATTGTGATGACATCCTGCATGAGATCCTGCTTCGACTGCCACCGTC AACTATCTTCAAGTTAATTGTTGTGTCGAAAATATGGCTGCGTGTGATATGCAGTTCTACATTTCGTCGCTGTTACTTGA GTAAGTGGGGACAAGATTTTCGACTTCTGGGTTTTTGTGTATGCAACTTTTTATATCTTGGAAGACCGCGTGATGGCTAC CGCCGCCCTCGCTCGGAGCCTGCCCTTCCATTCTTGTCCACTTGCAAAGAGGGTGATGATTTGCAGCTTTCAGGAGTCCT AAAAAAACTTGGGTACTTCATTGATTGTTCCAATGGCATTATTCTTTCTGGTTTCCATCCAAAGACATTCTATGTGTACA ATACCATGACCAAGCAACGGCATGAACTCCCAGAACCTCAGCAGTTCTATAAAACTCTCTGCATGGCGTTGATTGTTGAG GAATATGTTGACGGTGACATTTGCTACAAGGTGATCCGCGCAAGATGTGAACACAAACTTAAGGAACGCAACACTCTCTC AGTTGAGACTTTCTCATCTAAAACTGGAAAATGGAAGCAGTCCACTCTGCTGTGCTCTTCGTCTTTTGCGCTGCGCCCAA AGACAGTAGGTATGGTGGTTGGGGGAGTTGTACACTGGTTTGCAATGTGGGGAAAACTTGCCATCTATGATCCCCGTCTT GGAGACAGGAAGGTTGCTTTAGTTAAACTACCGGCTGGTGCTTTATCGCTCGAGCATGAGGAGTCTGTTCTTGGGGAGTC GTCTGATGGGCTCTTGCTGTATGGTCAGAGCAACAACTTGGGTCTGGAGATATGGGTACTCGAGAAGGAAGCAGGAACCA ACCCATCCATGTACAGCAACTGCACTCATTTGAGCTACAAGTGGATTCTAAGGTGGAGATTGAGTTTTAAAGAATTATGG AAGCAGATACCAACTTTAAGCATGCATTTTAAGGAGGGCCAGATTTTATCATTTCTTCCTCAGAATTCTACATCTGTCTA CATCAGAATGGGGTGGAACATTTTACTGTGTGATTTGAAGACCAAAACAGTGGAAATAGTTAATTATCAGGGTCGTGGAA CCGCCATTTCATGGGAATCTAGCAAAGTTGTTCCTTTCTTTCTGCCTGCTTGGCCATTCTCTTCATCTATGGCATGA
Protein sequence (LotjaGi1g1v0783600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRRKSVYAVLNCDDILHEILLRLPPSTIFKLIVVSKIWLRVICSSTFRRCYLSKWGQDFRLLGFCVCNFLYLGRPRDGY RRPRSEPALPFLSTCKEGDDLQLSGVLKKLGYFIDCSNGIILSGFHPKTFYVYNTMTKQRHELPEPQQFYKTLCMALIVE EYVDGDICYKVIRARCEHKLKERNTLSVETFSSKTGKWKQSTLLCSSSFALRPKTVGMVVGGVVHWFAMWGKLAIYDPRL GDRKVALVKLPAGALSLEHEESVLGESSDGLLLYGQSNNLGLEIWVLEKEAGTNPSMYSNCTHLSYKWILRWRLSFKELW KQIPTLSMHFKEGQILSFLPQNSTSVYIRMGWNILLCDLKTKTVEIVNYQGRGTAISWESSKVVPFFLPAWPFSSSMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 395 | 391 | 5.5E-106 | – | |
| PANTHER | 5 | 395 | 391 | 5.5E-106 | – | |
| SMART | 12 | 52 | 41 | 0.0039 | ||
| Pfam | 14 | 48 | 35 | 1.7E-4 | ||
| SUPERFAMILY | 14 | 69 | 56 | 1.28E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0783600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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