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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0783800 |
| Transcript ID | LotjaGi1g1v0783800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Profilin; TAIR: AT4G19400.1 Profilin family protein; Swiss-Prot: sp|Q6PI53|MED24_XENLA Mediator of RNA polymerase II transcription subunit 24; TrEMBL-Plants: tr|I3SB44|I3SB44_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0783800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135682534..135685321) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTGGGGTTTTGTGCATAAGACATGGGATAAATGGGCTTCTACAAACATTGGTTATTCTGGTGAGCAACATTTACC TTTGAAATGATGCTGAAATGCATAAATGTTCTTAGCTGTGATGTGAATTTCACCATTTTTGAAAATTAATTTGTAAATAT TGTTGAATGTTGACATTTTTCTGATCCTTGTATGTTCTAGGTTATCCTTTGAAAGCTGCATTGCTAATCAATTATGACCC AACTGGACCGTCTCGCTTGTTATCTACAATGTAAGAAGATTAATTTATTCTTGATATGAATTATTGTTGTTTTTTGGTGT TTGGAATTGGAGTCTCTGTATTTGAAGCTGTTAGGTTTCAATTTTTGATGCACTTTTCTTCATATGGAATTTTTTATCAA CTATCCTGACCTGTGCTTTCATGATTATACCAATTTATAATGATAATGGATTCCATTGATACTAGTACTAGTTTAGCTTG TTTGGATTAAGTATTGAACTTTCTAATCTAATTATTCTCAAAGGGAACCTCTTAAGTACATGTAGTTGTAAGTTGTAACT TAAAATAAGCAAAAAAGGATGAACTGATATCATTATTTCAAATATGCTGCTTGACTGATTTTCCTCCATCAAGTTCCCTG ACCTGCTTACTATCTTGCTTCTTGTTCCTGTTCAATAGTTTATATCACACTTCATTCGTGGCAATTAAATGCAATCGCGT GCCTGGTTAGTATATCTGTATCTGTTCAGCTAAGCTGTTATGCTGAAGTTGTTGCCGCTATTCCATAAGCAATCAAATTG TCATGTTACATTGTTTTCTATCTAAATAAGAAATAGTTGTAAGTTGTAACATTCTAAGTTATTCTGTGGTTTTGTTTGAA AATCTCTTTTTAACACTGTTAGAGGTTGAGGATGTTTAAGTACTTGTTTTTGAATTTTTTTTAACATGTTGCCTGCTAAG ATTCATGCTGGCTTTGTTAAATCATTACTGTTGTGTATTTGGACGTTTGTTTTTGTTATTTCTAGAAATATTGGATTTAT CAATTGGGCTGTTGGATACTGGCAGTGCTGAACAAGAAGGAATGAAAGCCAATCCCATTGAATTGAGCCACTTTGTGAAC TTCATCAAACACAATAAACTCCAGACAGAGAACTTCATTATTGGGTCCAATCAGTGTAAGCTTAAACTTAGCTGCATTTA GTTTGCGTAAATAATGACTTGCTGCTTAGTTTGGGAGAAGGTGTATTCTGGTATTTATGTTTTCTGATTTCTTGTTTATA TGCTCTCTACTGGAAGGACATTTTCTGAATATTGAAGAATATACTATATTTTTGTCTCCCCCATACCTAGGTAATGAGTA GTTTAGGACTCTGGGAGACTTGGGCTAGGTTTAACAACTGTAGCATATATGGTCTTGATACTTTTGTTTCTGATTGTGCA CTAGTGAGGGATTATGCAGCTGTGAACTTATGCTGCCATAGTGGTTGAGGAGAGAATAACAAGAGTCACACGTAATCACG TATTGCTCAAGTATATCTTGCGATATGTGAAAAAAACTCATAATCCTGGGAAGTTTCCATTAGAATGATAGGGATCAAAC CCCTATAAGGAAGGTCTATGCTAGGAGATGCAAGCAGGGGAGCAGGGAATAATTCCTTTATTAGCTGTTAGTAGTTTTTC TGTTATGTTATTCTGTTACTAACCAGTTGTAGAGAATAACTAACTACTTCCTTATAACTGGGATCATTTTGGGGGAGTGA ATCTGGAAACTTGAATTCCAGGTGCAATTTTTCTTATTTTCTTTTTTCTTTCTGTTTCTCTCATTCTCTGAGAGCAGAGT TCAATCAATCACAGTTCTTCTATTTTCTCTCTTTTTTCTAAGTCAGAGTCTATCATAGAAACCTTTAACAAATTTAGAAG AATCACAACTTCACAAGTTAAACGCTTGTGGACATGAATGCATGTGCGCGCATCTTCATATGCAGCTAGCTTATGCACCT TCTAGTTTAAATCCTTCTGGTTATGGGATGCATGATGGACGGTCAACATTTAGATTGAAGTTTTAAGTCTAGGCCAATTA TAATGGTGAATGCTTAATTCTATGTACTCCTTTTAGCTTCATAGAATTAATGGTGAAAAGCCAAATAAATACGAGCTATA TTGAACATTTTTCTGCAGGCTGTTTAATTATTTTTGTGGTGAATTTTGTGTGTTTGAATTAGTTTATTTCATGATGTATT CCCTAAATTTGAAAACGTGATTATTCCCTAAATTTAGGTTTTCAAACATGCATTAGTTTTAAATTTGAAAGTTCACAATG TTCTGGATTGCAGTTTGCAGATGGTAAGTTGATGCATGTTATTACATACATGATGGTAATGCATGTAGTTAGGTTAATTC CACTTCTGTTGCATTGTCTATAACTTTATTTACTGCTATAGTACATTGTAGTTCTCTTTGCATACTCTACTGATGGAAAT TTGGATGGCAGACTTGGTCACGTCGATTCACGAGAATTGGTTTAGTGCAAGGTGCATAAACACATTAAAGGCTGCTGGGG AAGGTGCAATTGTTATGCAAACAGCAGCATATATCTTGGTTGCTCTGTAAGCATCTAATTCTAATTCTGCATGTTTATCA TGTACAAATGCACTATGCCTTTTTTCTCTCTGCCTTTGTTCTCACTTATCTCGAGTTTCACAGGTATGAAGGTTCGATCG GTCCAGCATCTCGTGCAATGGCAGCTGCTGATCAGTTAACTTGGCAATTAGGGCGAAAAAATCTGTAG
CDS sequence (LotjaGi1g1v0783800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGGGGTTTTGTGCATAAGACATGGGATAAATGGGCTTCTACAAACATTGGTTATTCTGGTTATCCTTTGAAAGC TGCATTGCTAATCAATTATGACCCAACTGGACCGTCTCGCTTGTTATCTACAATTGCTGAACAAGAAGGAATGAAAGCCA ATCCCATTGAATTGAGCCACTTTGTGAACTTCATCAAACACAATAAACTCCAGACAGAGAACTTCATTATTGGGTCCAAT CAGTACTTGGTCACGTCGATTCACGAGAATTGGTTTAGTGCAAGGTGCATAAACACATTAAAGGCTGCTGGGGAAGGTGC AATTGTTATGCAAACAGCAGCATATATCTTGGTTGCTCTGTATGAAGGTTCGATCGGTCCAGCATCTCGTGCAATGGCAG CTGCTGATCAGTTAACTTGGCAATTAGGGCGAAAAAATCTGTAG
Protein sequence (LotjaGi1g1v0783800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWGFVHKTWDKWASTNIGYSGYPLKAALLINYDPTGPSRLLSTIAEQEGMKANPIELSHFVNFIKHNKLQTENFIIGSN QYLVTSIHENWFSARCINTLKAAGEGAIVMQTAAYILVALYEGSIGPASRAMAAADQLTWQLGRKNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 3.3E-74 | – | |
| Gene3D | 9 | 146 | 138 | 7.3E-11 | – | |
| Pfam | 9 | 139 | 131 | 3.0E-11 | ||
| SUPERFAMILY | 10 | 142 | 133 | 1.4E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0783800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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