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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0784400 |
| Transcript ID | LotjaGi1g1v0784400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat domain-containing protein 13B; TAIR: AT3G04470.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q86YJ7|AN13B_HUMAN Ankyrin repeat domain-containing protein 13B; TrEMBL-Plants: tr|A0A0L9VL96|A0A0L9VL96_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0784400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135710460..135713419) extracted from Lotus japonicus Gifu genome v1.2.
AGTTGCCAGTTGAAGTAATCTCTGGCAGTTTAATAGTGGGTGGAGGTTCATACTTCAAACTTCATTGTGTGGCTGGCAGG GGAGAGTTTAAATTTGAACTACAGATAAACCCAGATTACTCATTTTTGGAGCTCTTTCCTCTTTACTGGGACCATAGAAA ATTGATTTGAAGTGTTTGAACCGCGAAGGTATGAGCGAAGCCTGTGCGATTTCTGGTTTTTAACTAACTTGAGATTGACC TGCCAAATGGTACTAGCCTAAGAGAGAGGTAGGAGGTCGATCAATGGAGGACTTAACTAAATATGCACACAGTCCTGCTC ACTTGGCAGTTGCCAGGCGTGACCATGCTGTCCTGCGCCGCATTGTTTCCGGGCTTCCGCGGCTGGCTAAGGCTGGTGAG GTAAACACGGAAGCTGAGTCTCTTGCTGCTGAAGTTAGAGCGGATGAGGTATCTGCTGTTATTGATCGCCGTGATGTTCC TGGTAGGGAGACCCCTCTTCACCTTGCAGTGAGGCTCAGGGATCCTGTCTCTGCTGAGGTTTTAATGGCTGCTGGTGCGG ATTGGAGTTTGCAGAATGAGAACGGGTGGAGTGCTCTCCAAGAAGCTGTGTGTACTAGAGAGGAAGCTATTGCGATGATT ATTGCACGGCACTATCAACCTCTGGCTTGGGCTAAATGGTGTCGTAGGCTTCCCCGCATTGTTGCTTCAGCATCTCGTAT TCGTGATTTTTATATGGAGATAACTTTTCATTTTGAGAGCTCTGTAATTCCTTTTATTGGGCGGATAGCTCCTTCAGATA CTTACCGAATATGGAAGCGAGGTTCTAATCTCCGTGCTGACATGACCCTTGCTGGTTTTGATGGCTTACGGATCCAAAGA TCGGACCAAACCTTTTTGTTCCTTGGAGAGGGCTATACTTCAGAGGACAGTAATTTAACACTGGCACCTGGTTCTTTGAT TGCTCTTTCTCATAAAGAGAAGGAAATCACAAATGCTTTGGAAGGAGCCGGTACACAACCAACAGAAGCTGAAGTTGCTC ATGAAGTTTCTTTGATGTCTCAGACAAACATGTACAGACCAGGTATTGATGTTACTCAAGCGGAGCTGATTCCCCATTTA AATTGGAGGCGCCAGGAGAAGACTGAGATAGTTGGGAATTGGAAGGCAAAAGTTTATGACATGCTTAATGTAATGGTGAG TGTTAAGTCAAGGCGGGTTCCAGGTGCTATGACAGATGAAGAGCTTTTTGCTGTGGAGGATGGAGAAAGTATGGTAAATG GGGAACACAATGATGAGTATGATGATGTACTGACTGCTGAGGAAAGACTGCAGTTAGATTCTGCACTGCGTACGGGGAAT TCTGATGGTACATGTGAAGATGACGAACATGGTGCCCATGATGGTCAAGAAAATGTCTCATCAACTTCTAATGAAAATTC GGAAGCCAATGGTGCGGTTAAAGAGAAGAAGAGCTGGTTTGGTTGGAACAAGAAAAGTTTGAAGAGCGGTAGTGATGACC CTGAGGATTCCAAATCTTTGAAGAAAGTTTCAAAGTTTGGCCCAGAAAGTAGCAACCAGAGATCAGGTGATCAGCAAAAG TTAGCATCTGAGTTTCTGAAGGAGGATAGTGGAGACTCTAAAAAGGGAAAAGATAAAAACAGTAAAAAGAAGAAGAAAGG AGCGGTCAGTGAGCCTAAGAATGAGAGCGAGTATAAAAAGGGCTTAAGACCTGTCTTGTGGTTGACGCATGACTTCCCTT TGGAAACCAATGAGCTTCTGCCGCTACTTGACATCTTAGCAAATAAGGTTAAGGCTATTAGAAGACTCAGGGAGCTTTTG ACAACTAAGCTTCCTTATGGAACTTTTCCTGTCAAGGTAATCCAAATGCCATAACCTTAAGCTGTTAACTGTTTATGCAA TACTGCTCTGCACCCTGTATCTGCTTTTTTAAACTGAAAGTGAGCTAAGATTTTATTTAATAGTATAAATATACTGGATG AATATTTGAATTTTCTAAGTTAAGGTTTCACAACTTCGATGAGATTCTGTCTAACAGCCACGGGTCAGTCCATGTTTCTT ATGGTCATTCTTGTACTGACATTTGTGCGTGCTTATATCGCAAGTGTCTCGAATAACTGACAATCATCACATGATACTTC TTTACTGTTATGATATCTTAAACTAAGTAAAGCTACTGTGAAATGATACTAGACTGTTTAATGTGCAAAAGCAGGATTTG CTGTCCAGTTTTCATTTTTCCCCTCTCCAGGTTTCTCTAGTTGTATTTTGCTTTATGAGAGTTCTTTTTAGTTGACACTT GGCAGAAATTTTCTGATGATCATGAATCATCACACTTAGACCTTATCATGGATTATTTATACCTTGGTCAATTTCAGTCT CGTTAATAAAAAATCTAAAGAAATCAAACTTAGTGCTGGTGCAGCAATAATGTGCCTGATTTTCTGCTTGTCTATGTGCC ACGTCCCTTTTTTTTGTGGGATGTTCAGCAATCAGCATCCATGTTTGGTCTTCATAAAGGCTTCTGTTTTTAATGATAAT AATCTCTGGTGCTACTTAGGTTGCTATCCCAATAGTCCCTACTATCCGGGTGATTGTCACTTTTACGAAATTTGAGGAGC TTCAGCCAGCAGAGGAGTTTTCAACTCCACTTTCCAGCCCTGCCCATTTCCAGGATGCCAAATCCAAGGAATCAGAGGGA TCTACATCATGGATTTCATGGATGAAAGGAAATCGAGGGGGGCAGTCCAGTGACTCTGATAGTCACAGATATAAGGATGA AGTTGATCCGTTCAACATACCTGCAGACTACAAATGGGTGGACGCCAATGAGAAGAAACGGCGAATGAAGGCAAAGAAAG CTAGAAGTAAGAAACTTAAGAAGCAGACAGCAGCTAAAAGTGGAGATGGAGTACATCAAGTGACAGAGGAGGTTGAAGAA
CDS sequence (LotjaGi1g1v0784400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGACTTAACTAAATATGCACACAGTCCTGCTCACTTGGCAGTTGCCAGGCGTGACCATGCTGTCCTGCGCCGCAT TGTTTCCGGGCTTCCGCGGCTGGCTAAGGCTGGTGAGGTAAACACGGAAGCTGAGTCTCTTGCTGCTGAAGTTAGAGCGG ATGAGGTATCTGCTGTTATTGATCGCCGTGATGTTCCTGGTAGGGAGACCCCTCTTCACCTTGCAGTGAGGCTCAGGGAT CCTGTCTCTGCTGAGGTTTTAATGGCTGCTGGTGCGGATTGGAGTTTGCAGAATGAGAACGGGTGGAGTGCTCTCCAAGA AGCTGTGTGTACTAGAGAGGAAGCTATTGCGATGATTATTGCACGGCACTATCAACCTCTGGCTTGGGCTAAATGGTGTC GTAGGCTTCCCCGCATTGTTGCTTCAGCATCTCGTATTCGTGATTTTTATATGGAGATAACTTTTCATTTTGAGAGCTCT GTAATTCCTTTTATTGGGCGGATAGCTCCTTCAGATACTTACCGAATATGGAAGCGAGGTTCTAATCTCCGTGCTGACAT GACCCTTGCTGGTTTTGATGGCTTACGGATCCAAAGATCGGACCAAACCTTTTTGTTCCTTGGAGAGGGCTATACTTCAG AGGACAGTAATTTAACACTGGCACCTGGTTCTTTGATTGCTCTTTCTCATAAAGAGAAGGAAATCACAAATGCTTTGGAA GGAGCCGGTACACAACCAACAGAAGCTGAAGTTGCTCATGAAGTTTCTTTGATGTCTCAGACAAACATGTACAGACCAGG TATTGATGTTACTCAAGCGGAGCTGATTCCCCATTTAAATTGGAGGCGCCAGGAGAAGACTGAGATAGTTGGGAATTGGA AGGCAAAAGTTTATGACATGCTTAATGTAATGGTGAGTGTTAAGTCAAGGCGGGTTCCAGGTGCTATGACAGATGAAGAG CTTTTTGCTGTGGAGGATGGAGAAAGTATGGTAAATGGGGAACACAATGATGAGTATGATGATGTACTGACTGCTGAGGA AAGACTGCAGTTAGATTCTGCACTGCGTACGGGGAATTCTGATGGTACATGTGAAGATGACGAACATGGTGCCCATGATG GTCAAGAAAATGTCTCATCAACTTCTAATGAAAATTCGGAAGCCAATGGTGCGGTTAAAGAGAAGAAGAGCTGGTTTGGT TGGAACAAGAAAAGTTTGAAGAGCGGTAGTGATGACCCTGAGGATTCCAAATCTTTGAAGAAAGTTTCAAAGTTTGGCCC AGAAAGTAGCAACCAGAGATCAGGTGATCAGCAAAAGTTAGCATCTGAGTTTCTGAAGGAGGATAGTGGAGACTCTAAAA AGGGAAAAGATAAAAACAGTAAAAAGAAGAAGAAAGGAGCGGTCAGTGAGCCTAAGAATGAGAGCGAGTATAAAAAGGGC TTAAGACCTGTCTTGTGGTTGACGCATGACTTCCCTTTGGAAACCAATGAGCTTCTGCCGCTACTTGACATCTTAGCAAA TAAGGTTAAGGCTATTAGAAGACTCAGGGAGCTTTTGACAACTAAGCTTCCTTATGGAACTTTTCCTGTCAAGTTAAGGT TTCACAACTTCGATGAGATTCTGTCTAACAGCCACGGGTCAGTCCATGTTTCTTATGGTTGCTATCCCAATAGTCCCTAC TATCCGGGTGATTGTCACTTTTACGAAATTTGA
Protein sequence (LotjaGi1g1v0784400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDLTKYAHSPAHLAVARRDHAVLRRIVSGLPRLAKAGEVNTEAESLAAEVRADEVSAVIDRRDVPGRETPLHLAVRLRD PVSAEVLMAAGADWSLQNENGWSALQEAVCTREEAIAMIIARHYQPLAWAKWCRRLPRIVASASRIRDFYMEITFHFESS VIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGLRIQRSDQTFLFLGEGYTSEDSNLTLAPGSLIALSHKEKEITNALE GAGTQPTEAEVAHEVSLMSQTNMYRPGIDVTQAELIPHLNWRRQEKTEIVGNWKAKVYDMLNVMVSVKSRRVPGAMTDEE LFAVEDGESMVNGEHNDEYDDVLTAEERLQLDSALRTGNSDGTCEDDEHGAHDGQENVSSTSNENSEANGAVKEKKSWFG WNKKSLKSGSDDPEDSKSLKKVSKFGPESSNQRSGDQQKLASEFLKEDSGDSKKGKDKNSKKKKKGAVSEPKNESEYKKG LRPVLWLTHDFPLETNELLPLLDILANKVKAIRRLRELLTTKLPYGTFPVKLRFHNFDEILSNSHGSVHVSYGCYPNSPY YPGDCHFYEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 139 | 138 | 3.4E-12 | ||
| PANTHER | 3 | 532 | 530 | 5.7E-236 | – | |
| PANTHER | 3 | 532 | 530 | 5.7E-236 | ||
| SUPERFAMILY | 9 | 127 | 119 | 1.02E-9 | ||
| ProSiteProfiles | 67 | 109 | 43 | 11.957 | ||
| ProSiteProfiles | 67 | 99 | 33 | 9.644 | ||
| Pfam | 184 | 532 | 349 | 4.7E-82 | ||
| MobiDBLite | 356 | 475 | 120 | - | – | |
| MobiDBLite | 397 | 422 | 26 | - | – | |
| MobiDBLite | 423 | 439 | 17 | - | – | |
| MobiDBLite | 440 | 456 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0784400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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