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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0785000 |
| Transcript ID | LotjaGi1g1v0785000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Light-dependent short hypocotyls protein; TAIR: AT5G28490.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q6NNI3|LSH1_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1; TrEMBL-Plants: tr|F6H618|F6H618_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0785000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135753655..135755459) extracted from Lotus japonicus Gifu genome v1.2.
AGAATACAACTATTATATGTCTGTCCAATGGTCACCATCACATTCATCACTGCCAAACTTTGTCTTGTTCTCTCTCTGCA CTCTTCTTTAATAATATCTCCACATCCTCTTAATCTCTTACTTATTACAGTAACATCACTCACTTCACTCACTATTCATT GTACGGTATTAACACCAACTCTCACTTTGCTTGCACTTTTCTGGAAAGAAAAGAAATCTCAATATGTTGTGAACCCTTTT TCTTCCCACACATGAATAATTCCATTTCCAGCAATGGCTACCTCTTGCAGCTCCATCTTAGGATTTTCTCAAAAACTTCA TAATTAGATGGTATCAAACTCATTCCTTCTCTTCAATTCCTTTCCCTAGCAAACCCTTTATTCTTATATGTTTCCTCTTT CTTCTCCATCTTTGACATTTAATTATCAATAGAAGAAGAAACGAAAAATAATGAAAGCCAAGCCACACCATGCACTGTTG CTTTCAGCTTTCAGGTTTCATTTATCTCTTTCGAGTTAGTTAGGTTTTTATCCACTTTCTTCACTACTCAATTTCTAGCT AGTTAATACCACAAATCCTAGATACCAATTAACCAAGCTAAAACCAAAGCAACAAGGGTTTTTGAAGAAGCTTCAGATCT TCATCAAATCATGGATTTGGTTTCTGAATCAACAAACCCCACCACTCCAACAACAACCCCCTCACCAAACAACAATGGTT TGAGTTCAAGCAGGTATGAGAACCAGAAGCGGCGAGACTGGAACACGTTCTGCCAGTACCTGAGGAACCACCGGCCACCG CTCTCTATGGTGACGTGCGACGGCGCTCACGTGCTGGAGTTCCTCCACTACCTTGACCAGTTCGGGAAGACCAAAGTTCA CAACCCCACGTGCCCTTTCTTTGGTCTCCTGAACCCTCCAGCGCCTTGCCCGTGCCCTCTCCGGCAGGCGTGGGGGAGCC TCGATGCACTCATCGGGCGCCTCCGCGCCGCATATGAAGAGAACGGGGGCAGGCCAGAAACCAATCCGTTCGGCGGCCGC GCCGTGAGGACTTACCTCCGTGATGTGCGTGATTTTCAGGCGAAGGCAAGAGGAGTTAGCTATGACAAGAAGAGGAAGAG GCCAAAACCTAACATGAATACTAGTACTAGTTCTAGTAATAGTACTAGTGTTACTGCTTCTCCCACCACTACCTAGTCAA ACTCAACCTTCAAAACAAAGGGTCCTTCATGCATAAATGGTATATCAATATCTTTTTCCTTTCTTATGTCTCTCCCTTTT TTTAGTATATATTACTATTTACTGTATGTTTGTTTGTTCGTTTCTTAATTAGTGATTTTACATATCATAATTCATAAATG GAGATGCAGGATTTTGTGGCATTGAAATCTGAGTTCAACAGAAATTCAAGCATACAGTACTCAATCAGATGCGGCATGTT GTTGAAATTGTTCGTGCATCATTGTTCAGATGAGTAGCTAGGATTGGTACCACTGGAGTTATATTCTATGCAAACTGATG CATTCTAATACAGTACTCCAAGTAATATTTGCTTATTGTTGATTTGTATTGAGATTAATAGTCATATGTATACACTCTAA AGCGTGTTCTGGACTTGCACTTCAATCTTATCTCTAGCGACTCAGCCTCTTATTGAAAATGATTAAAATCTACATATGAT TAGCACTTTATCTGGTTATTAATGTGAGCAAGGTAATTGTTGTATTTGTGTGTTTTTGGCTATTAGTTATATGAAGGTTT TACTTTTCTTACTTTCTTAATAAAACATACAGAATTACTCTTTCT
CDS sequence (LotjaGi1g1v0785000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGGTTTCTGAATCAACAAACCCCACCACTCCAACAACAACCCCCTCACCAAACAACAATGGTTTGAGTTCAAG CAGGTATGAGAACCAGAAGCGGCGAGACTGGAACACGTTCTGCCAGTACCTGAGGAACCACCGGCCACCGCTCTCTATGG TGACGTGCGACGGCGCTCACGTGCTGGAGTTCCTCCACTACCTTGACCAGTTCGGGAAGACCAAAGTTCACAACCCCACG TGCCCTTTCTTTGGTCTCCTGAACCCTCCAGCGCCTTGCCCGTGCCCTCTCCGGCAGGCGTGGGGGAGCCTCGATGCACT CATCGGGCGCCTCCGCGCCGCATATGAAGAGAACGGGGGCAGGCCAGAAACCAATCCGTTCGGCGGCCGCGCCGTGAGGA CTTACCTCCGTGATGTGCGTGATTTTCAGGCGAAGGCAAGAGGAGTTAGCTATGACAAGAAGAGGAAGAGGCCAAAACCT AACATGAATACTAGTACTAGTTCTAGTAATAGTACTAGTGTTACTGCTTCTCCCACCACTACCTAG
Protein sequence (LotjaGi1g1v0785000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLVSESTNPTTPTTTPSPNNNGLSSSRYENQKRRDWNTFCQYLRNHRPPLSMVTCDGAHVLEFLHYLDQFGKTKVHNPT CPFFGLLNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGGRAVRTYLRDVRDFQAKARGVSYDKKRKRPKP NMNTSTSSSNSTSVTASPTTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 8 | 175 | 168 | 2.5E-99 | – | |
| PANTHER | 8 | 175 | 168 | 2.5E-99 | ||
| Pfam | 20 | 141 | 122 | 1.2E-63 | ||
| ProSiteProfiles | 28 | 155 | 128 | 78.59 | ||
| MobiDBLite | 146 | 181 | 36 | - | – | |
| MobiDBLite | 161 | 181 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0785000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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