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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0785500 |
| Transcript ID | LotjaGi1g1v0785500.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; TAIR: AT1G54450.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9SLI8|2AB2D_ARATH Probable serine/threonine protein phosphatase 2A regulatory subunit B''delta; TrEMBL-Plants: tr|A0A0S3S509|A0A0S3S509_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0785500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135806014..135809656) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGACAAAGGATATAGCAAACCAAATATTTACAATTTTAAAGCAACCACAGCTCAACTACCTTACCCAGGTATTTTT CTTCTATTTCTTTTTTTCCTGGTTCATTTAATTTTATTCTCCTCATCTGATCATTACACTCAGTCATTGCCTGATGAAAT CGATCAAATATGTCTATTCGATTTTCATTTCATACCGAAATGATTCATTTTCTTAGGGTTCAATTTTTTCTTCTTCTTGA ATTTGGTATTATATTCCTGTCCGTCCTTTTTGAGAACTATATTGATGTCAGGATGATTTTAAACCTGTTCTACGTGAGCT TTTGACAACTCATCCAGGGCTGGAGTTCCTGCAGAGCACACCTGAATTTCAAGAGAGATACGGTTTGTTTCCATCTTGGC TATTGGTTCATCTAATTTTGGATATCAGAAAAGAGTTTCAGATTCTTGCTACACTTATTTTCTCAAAGACACCATTTTTG GGGTTATTCTTTATTCCAGCAGGCTTTTCCCAAATCTGCAGTCATAGGTTTATTACATTTAGTCTTGCCTTTGAAACTGA TAAACGTTTTTTCTTATCCTGCGTTGACATTATTCAGCCTGTTGTGCATAACTGCTACTAGTTTGACTCAATTTTTTCAG TTCATAAAAAAATGTCAATGAATCAGTAGCCAATAGAAATTGTGATGAGTACAGAATATCCATTCATGATTTTTCATTGT CTATGTTTCTTTTTTTGTTTTTTTATAACTTCTTTCTTTATTTTTATTTGGGCTTTTCCTTCTAATTTCAATTAAAATGT AATAATGCATATGATTATATATATCGAAGAGTCATTCTTCATTTATCTGAGATTGTGAAGAATCAGTTAAATGACGTTAA TCTAAGTTGATTGTTGAAATCTGGGCATAGGCTGGTCATGGTTTCTGGAGTAATGCTGTTGTTTCATGGTACTTGTTTTT CCAATTTCCCAGCTGAAACTGTAATATATAGAATATATTACTACATTAATAGATCTGCAAATGGTCGTCTTACCCTGAGG GAGCTGAAGCGTGGAAATATAATTGATGCAATGCTGCATGCTGATGAAGAAGAAGACATCAACAAGGTTTTGAGGTAGAT ATATTGTGAAAATGTCATTACCATTAACTTCAAAAAATGATTTTGGTTTCTTATTCAAATGAATTAAATATATTTATATC AAAATGCAGTGATCTTTTATACCTTCCCTTAAATATTGTTTGCAGGTACTTCTCTTACGAGCACTTCTATGTTATATACT GCAAGTTTTGGGAGCTGGATACAGATCACGATTTCTTGATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTC ACCTATCGAATTGTCGATAGAATATTTTCTCAGGTTTGTGTGGATATAATATTATGTACTGCTTGTCTTGAGATTTGATA AATAGCGGTGTTCAGCCACGGACAATCCAAGCCTCCAACCCTGCCCCTTCTAATAGACATACAATGTCTGTACACTTTTT TTTTTCATGACTTATCAGATTATTTGTTGAAGATACTGATTTTGACTCAGTTAAATATAATCACAGGTTGCAAGAAGGTT TACTAGTAAAGTTGAGGGAAAGATGGGTTATGAAGATTTTGTTTATTTCATACTGTCAGAAGAGGATAAATCATCTGAGC CGAGTCTTGAGTATTGGTAACTTTTTCTCATTCATTTTTCCGTTTCATTTGTTATCCTCTCACCCTTCTTGTTAAGATGT CACCGGATTAGTTGATGTCTAAGATGCAAATATGATGATGATTCATTATGTTAACCACGTAGATATCATGTTTTCTTTTG TTAGAATTTAGAAATATAATATAAAACCATTCATATGTTCTTCACTCAACAACTGTAGCTTTTGGGATAGTTTGTTCATG ACATGGTATCATAGCCTCTTTGATAAGTAGTCTAGAGTTTGATCCTTGTTGCCTCCATTATTCTAATAAAAAGTTGAATT TCAGCCCATGGCACGCAGCCCGCTGCATTCTCCACGCTTCAAGCCTAATGGGCTCTTGTGTGAGGGGGCGTGTTAGAAAT ATAATATAAAACCATTACCCAATAACTTAAGCTTTTGGGATAATTGGTTCATGACATATTTGATTTGGATTTTGGACTTC ACATATGCATACTCAAGTCTCAAAGGCATGGTGCTGAAACTTCACCTATTCAAAACTGACCAGAGTTTCAATTTTTTGAA ATAACAATTTTCATGTATGATGTACTAAAATTGTTGTTTTTATAACAGTTTTTGAAAGAGACAAAAGTAGGTAACAACAA TTTGCATATTATTTTCAGTTTTACCATTGATGAGAAAGTTTTTCATGAATTGTTTCCCCTGTTTTCTGTGACTTCAAAGT ACAAAATCAAGAAAACATCAAAATAGAAAAACTGTTTTTATATTAGCACGGTATAAACAATCCAACGGAAGAGTTTTATT TTTTCAAATAACTGTTTTTCAAATAGTTCCAAACACATCCAAAGTCTTTCCTTTCAAGGACGGTGATATTGCAAGCTTTG TGTCATAGGGTATTATACTCAATAGCAGTGTCAAGAAAAGGCACAGCTGAGAAATAGGACATGAATGATGGATTGAATTT TAACTTTGGGCTGGTTGGTACCTGGAATGATTGTAGGGAAATTGCACAATTTATTTTTTTGTTTTTGATTTTTTTTTAAA AGCTTTCTACCTTTTTCCACTGCCCTTTATTTTTCACCCTGCCCACAAAGCTCACCCTTAGGCCAGCATTTATAAATTGA CCTTTGTGGTTGACTCTTCTTAGCTATGTCTGACTTTGACTCACTTTAACTTGTCATGGTCAGGTTCAAGTGCATTGATT TGGATGGAAATGGAGTTTTGACACGAAATGAACTGCAATTTTTTTATGAGGAGCAATTGCATCGAATGGAGTGCATGGCT CAAGAACCTGTGCTTTTTGAGGATATATTGTGCCAGATTATTGACATGATTGGACCTGAGGTTTGTCTTTCAATCTTTCT TCAATTGATTGTTTAATCATATTTCATTGTGTTGTCAGGGAGTCACAATAGCTGAAAATTGATGCAATCTAGTGAGCAGT TTATAAAATTGTGTTTTGTCCTGGAGAAATGACAATCCAAGTTGCACTTTTTGGTTCCTCCTTTATAGTCTTTCATTATC TTTTGGCTGATATCTTGTTGTAACTTATCCTTTCGATGACATTTTTTTCCTTAATTCTAAATTAAAATTCTTCACTACGC AGGACGAGAGCTATGTAACTCTGCGTGACCTGAAAGGTGGAAGACTGTCTGGAAGTGTTTTCAATATCCTGTTCAATCTA AATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTTATTCGACAGGTGCATGAATATGTGATAAAAGTGTGCTTTTG ATTTGTATTATTGGCTATTGTCGATGAGTCTAACCTCCTTGGTGTATGTTTTGTGTGAACAGGAGCGTGAAAATCCTACA TTGACAGAATGGGATCGCTTTGCTCATAGAGAATATATTAGGCTTTCAATGGAGGAAGATGTAGAGGACGCCTCTAATGG AAGTGCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTGA
CDS sequence (LotjaGi1g1v0785500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGACAAAGGATATAGCAAACCAAATATTTACAATTTTAAAGCAACCACAGCTCAACTACCTTACCCAGGATGATTT TAAACCTGTTCTACGTGAGCTTTTGACAACTCATCCAGGGCTGGAGTTCCTGCAGAGCACACCTGAATTTCAAGAGAGAT ACGCTGAAACTGTAATATATAGAATATATTACTACATTAATAGATCTGCAAATGGTCGTCTTACCCTGAGGGAGCTGAAG CGTGGAAATATAATTGATGCAATGCTGCATGCTGATGAAGAAGAAGACATCAACAAGGTTTTGAGGTACTTCTCTTACGA GCACTTCTATGTTATATACTGCAAGTTTTGGGAGCTGGATACAGATCACGATTTCTTGATAGACAAAGAGAATCTTATCA GATATGGTAACCATGCGCTCACCTATCGAATTGTCGATAGAATATTTTCTCAGGTTGCAAGAAGGTTTACTAGTAAAGTT GAGGGAAAGATGGGTTATGAAGATTTTGTTTATTTCATACTGTCAGAAGAGGATAAATCATCTGAGCCGAGTCTTGAGTA TTGGTTCAAGTGCATTGATTTGGATGGAAATGGAGTTTTGACACGAAATGAACTGCAATTTTTTTATGAGGAGCAATTGC ATCGAATGGAGTGCATGGCTCAAGAACCTGTGCTTTTTGAGGATATATTGTGCCAGATTATTGACATGATTGGACCTGAG GACGAGAGCTATGTAACTCTGCGTGACCTGAAAGGTGGAAGACTGTCTGGAAGTGTTTTCAATATCCTGTTCAATCTAAA TAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTTATTCGACAGGAGCGTGAAAATCCTACATTGACAGAATGGGATC GCTTTGCTCATAGAGAATATATTAGGCTTTCAATGGAGGAAGATGTAGAGGACGCCTCTAATGGAAGTGCAGAAGTCTGG GATGAATCACTAGAGGCTCCCTTCTGA
Protein sequence (LotjaGi1g1v0785500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTKDIANQIFTILKQPQLNYLTQDDFKPVLRELLTTHPGLEFLQSTPEFQERYAETVIYRIYYYINRSANGRLTLRELK RGNIIDAMLHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVARRFTSKV EGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVLTRNELQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIGPE DESYVTLRDLKGGRLSGSVFNILFNLNKFMAFETRDPFFIRQERENPTLTEWDRFAHREYIRLSMEEDVEDASNGSAEVW DESLEAPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 328 | 328 | 1.1E-215 | – | |
| PANTHER | 1 | 328 | 328 | 1.1E-215 | – | |
| Gene3D | 2 | 107 | 106 | 2.0E-40 | – | |
| SUPERFAMILY | 4 | 81 | 78 | 3.66E-7 | ||
| Pfam | 5 | 94 | 90 | 3.3E-35 | ||
| SUPERFAMILY | 93 | 251 | 159 | 8.14E-25 | ||
| Gene3D | 108 | 275 | 168 | 6.8E-64 | – | |
| Pfam | 109 | 209 | 101 | 2.5E-19 | ||
| ProSiteProfiles | 180 | 215 | 36 | 10.943 | ||
| ProSitePatterns | 193 | 205 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0785500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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