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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0785500 |
| Transcript ID | LotjaGi1g1v0785500.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; TAIR: AT5G28850.2 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q5QIT3|2AB2B_ARATH Serine/threonine protein phosphatase 2A regulatory subunit B''beta; TrEMBL-Plants: tr|K7N069|K7N069_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0785500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135806894..135809656) extracted from Lotus japonicus Gifu genome v1.2.
TCTAAGTTGATTGTTGAAATCTGGGCATAGGCTGGTCATGGTTTCTGGAGTAATGCTGTTGTTTCATGGTACTTGTTTTT CCAATTTCCCAGCTGAAACTGTAATATATAGAATATATTACTACATTAATAGATCTGCAAATGGTCGTCTTACCCTGAGG GAGCTGAAGCGTGGAAATATAATTGATGCAATGCTGCATGCTGATGAAGAAGAAGACATCAACAAGGTTTTGAGGTAGAT ATATTGTGAAAATGTCATTACCATTAACTTCAAAAAATGATTTTGGTTTCTTATTCAAATGAATTAAATATATTTATATC AAAATGCAGTGATCTTTTATACCTTCCCTTAAATATTGTTTGCAGGTACTTCTCTTACGAGCACTTCTATGTTATATACT GCAAGTTTTGGGAGCTGGATACAGATCACGATTTCTTGATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTC ACCTATCGAATTGTCGATAGAATATTTTCTCAGGTTTGTGTGGATATAATATTATGTACTGCTTGTCTTGAGATTTGATA AATAGCGGTGTTCAGCCACGGACAATCCAAGCCTCCAACCCTGCCCCTTCTAATAGACATACAATGTCTGTACACTTTTT TTTTTCATGACTTATCAGATTATTTGTTGAAGATACTGATTTTGACTCAGTTAAATATAATCACAGGTTGCAAGAAGGTT TACTAGTAAAGTTGAGGGAAAGATGGGTTATGAAGATTTTGTTTATTTCATACTGTCAGAAGAGGATAAATCATCTGAGC CGAGTCTTGAGTATTGGTAACTTTTTCTCATTCATTTTTCCGTTTCATTTGTTATCCTCTCACCCTTCTTGTTAAGATGT CACCGGATTAGTTGATGTCTAAGATGCAAATATGATGATGATTCATTATGTTAACCACGTAGATATCATGTTTTCTTTTG TTAGAATTTAGAAATATAATATAAAACCATTCATATGTTCTTCACTCAACAACTGTAGCTTTTGGGATAGTTTGTTCATG ACATGGTATCATAGCCTCTTTGATAAGTAGTCTAGAGTTTGATCCTTGTTGCCTCCATTATTCTAATAAAAAGTTGAATT TCAGCCCATGGCACGCAGCCCGCTGCATTCTCCACGCTTCAAGCCTAATGGGCTCTTGTGTGAGGGGGCGTGTTAGAAAT ATAATATAAAACCATTACCCAATAACTTAAGCTTTTGGGATAATTGGTTCATGACATATTTGATTTGGATTTTGGACTTC ACATATGCATACTCAAGTCTCAAAGGCATGGTGCTGAAACTTCACCTATTCAAAACTGACCAGAGTTTCAATTTTTTGAA ATAACAATTTTCATGTATGATGTACTAAAATTGTTGTTTTTATAACAGTTTTTGAAAGAGACAAAAGTAGGTAACAACAA TTTGCATATTATTTTCAGTTTTACCATTGATGAGAAAGTTTTTCATGAATTGTTTCCCCTGTTTTCTGTGACTTCAAAGT ACAAAATCAAGAAAACATCAAAATAGAAAAACTGTTTTTATATTAGCACGGTATAAACAATCCAACGGAAGAGTTTTATT TTTTCAAATAACTGTTTTTCAAATAGTTCCAAACACATCCAAAGTCTTTCCTTTCAAGGACGGTGATATTGCAAGCTTTG TGTCATAGGGTATTATACTCAATAGCAGTGTCAAGAAAAGGCACAGCTGAGAAATAGGACATGAATGATGGATTGAATTT TAACTTTGGGCTGGTTGGTACCTGGAATGATTGTAGGGAAATTGCACAATTTATTTTTTTGTTTTTGATTTTTTTTTAAA AGCTTTCTACCTTTTTCCACTGCCCTTTATTTTTCACCCTGCCCACAAAGCTCACCCTTAGGCCAGCATTTATAAATTGA CCTTTGTGGTTGACTCTTCTTAGCTATGTCTGACTTTGACTCACTTTAACTTGTCATGGTCAGGTTCAAGTGCATTGATT TGGATGGAAATGGAGTTTTGACACGAAATGAACTGCAATTTTTTTATGAGGAGCAATTGCATCGAATGGAGTGCATGGCT CAAGAACCTGTGCTTTTTGAGGATATATTGTGCCAGATTATTGACATGATTGGACCTGAGGTTTGTCTTTCAATCTTTCT TCAATTGATTGTTTAATCATATTTCATTGTGTTGTCAGGGAGTCACAATAGCTGAAAATTGATGCAATCTAGTGAGCAGT TTATAAAATTGTGTTTTGTCCTGGAGAAATGACAATCCAAGTTGCACTTTTTGGTTCCTCCTTTATAGTCTTTCATTATC TTTTGGCTGATATCTTGTTGTAACTTATCCTTTCGATGACATTTTTTTCCTTAATTCTAAATTAAAATTCTTCACTACGC AGGACGAGAGCTATGTAACTCTGCGTGACCTGAAAGGTGGAAGACTGTCTGGAAGTGTTTTCAATATCCTGTTCAATCTA AATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTTATTCGACAGGTGCATGAATATGTGATAAAAGTGTGCTTTTG ATTTGTATTATTGGCTATTGTCGATGAGTCTAACCTCCTTGGTGTATGTTTTGTGTGAACAGGAGCGTGAAAATCCTACA TTGACAGAATGGGATCGCTTTGCTCATAGAGAATATATTAGGCTTTCAATGGAGGAAGATGTAGAGGACGCCTCTAATGG AAGTGCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTGA
CDS sequence (LotjaGi1g1v0785500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCTGGAGTAATGCTGTTGTTTCATGGTACTTGTTTTTCCAATTTCCCAGCTGAAACTGTAATATATAGAATATA TTACTACATTAATAGATCTGCAAATGGTCGTCTTACCCTGAGGGAGCTGAAGCGTGGAAATATAATTGATGCAATGCTGC ATGCTGATGAAGAAGAAGACATCAACAAGGTTTTGAGGTACTTCTCTTACGAGCACTTCTATGTTATATACTGCAAGTTT TGGGAGCTGGATACAGATCACGATTTCTTGATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTCACCTATCG AATTGTCGATAGAATATTTTCTCAGGTTGCAAGAAGGTTTACTAGTAAAGTTGAGGGAAAGATGGGTTATGAAGATTTTG TTTATTTCATACTGTCAGAAGAGGATAAATCATCTGAGCCGAGTCTTGAGTATTGGTTCAAGTGCATTGATTTGGATGGA AATGGAGTTTTGACACGAAATGAACTGCAATTTTTTTATGAGGAGCAATTGCATCGAATGGAGTGCATGGCTCAAGAACC TGTGCTTTTTGAGGATATATTGTGCCAGATTATTGACATGATTGGACCTGAGGACGAGAGCTATGTAACTCTGCGTGACC TGAAAGGTGGAAGACTGTCTGGAAGTGTTTTCAATATCCTGTTCAATCTAAATAAGTTCATGGCCTTTGAAACTCGTGAC CCATTTTTTATTCGACAGGAGCGTGAAAATCCTACATTGACAGAATGGGATCGCTTTGCTCATAGAGAATATATTAGGCT TTCAATGGAGGAAGATGTAGAGGACGCCTCTAATGGAAGTGCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTGA
Protein sequence (LotjaGi1g1v0785500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSGVMLLFHGTCFSNFPAETVIYRIYYYINRSANGRLTLRELKRGNIIDAMLHADEEEDINKVLRYFSYEHFYVIYCKF WELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVARRFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDG NGVLTRNELQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIGPEDESYVTLRDLKGGRLSGSVFNILFNLNKFMAFETRD PFFIRQERENPTLTEWDRFAHREYIRLSMEEDVEDASNGSAEVWDESLEAPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 71 | 69 | 1.8E-18 | – | |
| PANTHER | 8 | 292 | 285 | 4.4E-182 | – | |
| PANTHER | 8 | 292 | 285 | 4.4E-182 | – | |
| Pfam | 19 | 58 | 40 | 2.8E-9 | ||
| SUPERFAMILY | 57 | 215 | 159 | 6.02E-25 | ||
| Gene3D | 72 | 239 | 168 | 5.0E-64 | – | |
| Pfam | 73 | 173 | 101 | 1.4E-19 | ||
| ProSiteProfiles | 144 | 179 | 36 | 10.943 | ||
| ProSitePatterns | 157 | 169 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0785500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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