Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0786500 |
| Transcript ID | LotjaGi1g1v0786500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | c-Myc-binding-like protein; TAIR: AT2G14045.1 c-Myc-binding protein; Swiss-Prot: sp|Q54I57|MYCBP_DICDI C-Myc-binding protein homolog; TrEMBL-Plants: tr|I3SQY1|I3SQY1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0786500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135885012..135889123) extracted from Lotus japonicus Gifu genome v1.2.
CTGACGAATCAATTGAATCACAAATACACTAAAAAAATCCAAATGTGCTGCATAAAACAATCACAACTACATTGATATTT GATTCAACATAATTTTTAAATTTTCATTCTTCTTGAGAGGGGAATATTAAACCAACTATCATAAAAAAAACTTTTAAAAA GTGTTTAACTCAGGTCTGGTTAGTAGTTGGTTCAAAAGCGACAAATGCTTCACTGTGTATCTGACGATAGAAGACAGAAA GGGAAGGTGCTTCATCTGCAACTTTCATCGGAAAATTTATCATTGCACCGCCGTGGAGACTGGTCGCCGCCGCCGCCGCC GTACAGATCTCCGAGGCAAAGCAAAGAGCAGTAGAAGAAACAACAGACAATGATGCGATTCAAAGAGGTTCTATCTTCTA TCTCTCTCATTATTACTATAAATGTATATAATCCCAGATGGTTCACCGTTCATTCATGAATCTTACACTTCATTCACTGA TTTTGAAACAGGAAAAAGAAGCAAAGAAGGAAGCTTTTAGAAAATATCTGGAATCAAGTGGAGCTGTTGATGCTCTCACC AAAGGTTAATTTCTTTTATTTTCTCCATTTATTGCTGAAATCTTCATTTAATCATTCAATTTCAATCATTTGAACTTCAA AGTCTTTGCTTTTTGCAGTTCTTGTTGCTTTATATGAGCAAAATGACAAACCTTCTTCTGCACTTGAGTGAGTATTTTCA ATATTGAGCTTCATTTTCATTGAGGGTTCATTCAGTTTAGATTATTTTATTCTATTTTTGTTTTGTTATTTTGGCAGGTT CATTCAACAGAAATTGAGCTGTCCTTCCATCTCAGAGTATGAAAAATTGCAAGCTGAATTCTCTGATCTGCAAATTAGAT ATAATGAGCTTCTTGCTGCACATCACACCACTTGCAAAGAGGTGCCTTTTCTATCATTATCTGCAATATATTCATTGAAC TCTCCTGTTGTTTTGCTTGCTTCATGTTAAGAGCCTTTCTTTACTTTAACAATGTATTGCATAATGCTCTTGAGTCAGTT TGTGTATTTTGTCGTGAACCAACTATTCTAAAAGCTTAAACTGTTGAGTGAAGACACATAGATGGTTTGGGCTTCAAGTG TGGACAATGCACATGTTTTGTGCTGAAATTTAACTTTTTTAATTAGAATAATGGGGGTGCAGAGCTGATACCATGTCATG AACTAACTATCGCAAACAATTGTTTGGAATAGTTGATTCAGGATATGTTTGTAGTTGAAATGCAGCCTATGATACAAACT GATACGACATATAAGTTTGTCATCTTGTAAGTTCCAAACATTTGGGAGTTTATAAAAATCATATTTACCAGGATGAAATG ATTATGGATGTGGCATATCTGCTGCAACTTTAAGCTAATGTATACCTGCAAACGGCTGCTCATAATGTGCTGCGGTTGTA AGAACCAGGATAATTGGGATTCAAGATGGCGGGGGAAATTGATGTGCTTACTGTGTATGGAGCCTGAGATTAAAGTGGGA TCCCTTGATTAGCAACAACTATATGGACTTGAAATGTTGGTTGTGATGGATCAATGTATTGTGTGGTTAGGGAACTACAC CATATTTAGGGGGACATCGGAAGGTAATGGAGAAAACAAAGATTTTTTTTGAAAGCAAAAGGAGAATTATATATATAGCA AAAGATGATGTACACCAAAAAGCTAAACAAAGCTCACTATACCCATCCCCCAAAAAATAACCAATAAAACCCAAAAGATC CTAAGCCAACAAGGGTAGACAAAAACACCAAAAAGAGCCCCGGGCAAGCCAACAAGCACCCTCTAATCACCACTAACTAA ACCCACGAGAGCTAATATTAGCTGCTATACCTTGAAGAGCCTCCTCATCAGAGCAAGAATAAGACAATCCTAATCGAACC CCTAAGGCCAACGCCGCTCTCGCCCGCGTCATAACACCCGCAGGACCCTTGAGCCTCTGAGAATCAAAGACCACCAGTTG ATTCTCTGAAGGATCCAAAACACCCTCCCTCGAGCTTGGGGCCAAATCCAAGGACGAGCTAGCTCCTTTCAAAGGTCTCC CTCGGGGGCGAGAAACATTCTCTAAAGGACAACAACCTTTAGAAGTCCCTTCCCCAGGGTACAAAGATATGGGGGAAATC AGGAATGAAAAAGATATATGAACCATGAAATTTAGCTTCACAGCTAACTTTACCTGCATAGAAAAGGAGGTTGGAGATTG ATCTAAAGAGAGAAGAAAACAGGACATCAGCCAAACATTAACTCTCCCTGATAATTTTAATACAAGAAGCATATTTGCAT ATATTTTCTGTTGCGGATCAAGTTAACATTCAAAAGGATTGGAGAAATGTTGAAGGATAATCACTGTCTGTTCCCATACA TACCACTGAAACAAATGGAAATGATTCTCCAAACTCTTGCCTGTCATGAGATGTATTTTTGAAATATGTTAACTTTCTAA ATTCTAATTGGTGATTTGGTAATTTTGACCTTCAATATCTGTCATTCAAATATTTCATTGACTTCAGTTAGTTGCTTCAC TATGTTCTGTACTGCTTGACAGTTGGAAGAAATGAAAAGCTCGCATGCCTTGGCAATGGCATCTTCCAAGGAAACAACTG ATATTGAACCCCCTAAAGATGTGCTCTAAAGCTTCAAAGGTCCATAGAAGTGCATTTAACCTGGTTTGTAATTTTCGTGT GCTTTTTTTTTACTGATGATTGTAATATTTCTGTTCATTCATTGTTCCTTGTCTTTGGTGGTTCTGTAACTTGTAACCCC CCTAAGTTCTGATCTATATTTGTAGACCGGTGTTGATTTCTTATCAAGTTATTATGATATCCAAAAAAAAGTAACTATGC AGGCACGGTTAATTATGATAACCCACTACAAACTTGGTCGTGAGGCGACACCCTTCACTATCTCCACCACTACATGACAC CCTTGATCTTCACCACTATCGTCACTCAATACCCTTCACCATCAGTTTCTTGACATCCTTAATTATCATACTCAGTTTGA GTTTACATACTAACGTGGGGGAAAATGTCATTACTCCTCTACTGAATTTTTGCTAAACTTAGCAGTAGGGTTTTTGAAAA AAGCTAAATTAGATATTGAAGCATGACACTTTTCAAGTAATGGTGGTCTAAGTGGTGGAGATGTAAAAGCAAGGGTCTAA GGGAGAAGAAAGGTGGAAGGAGGCAGTGCAAAACGAGTTTCAAGGAATTCAAAACAAAAAAATACTCCAAACTAATAGAA TCAAGAAATAAAATAAAACCCCCCACTCAATGCTAAAGGATTTTAGAAGTTAATTTTCCGATGCACCAAAAAAAAAGGAT TTTAGAAGCTCGCTATATGAATGGCTTTAGGATCCCTGTTCTTGTATTATTCAACTTTAGAGGGTCTGGAGATTAATTGG GTAATTGACTAATTGTGACTTGATTTGGGCCCTTGTCGTGCGTCTTGGTTTGTGGGTCTGCTGATGCTATTTGCTTGCTA TGGATGTTGGAATTTTCTTGCTGCAGGCAACTACTTGGTGTATCATCTCTTGTAAGTCATAAGTGGTTTATATATGGTGC TGGCTACTATTACTGGTTAATTGGAATTGGGGTCACTCTTCCTTGTCTAGTGTATGGTATGGTTGCGGAATATGCTTGGG ATGCTAAAGCTATTTTTCTCATTATGGTTTTGGTGATAACATGAGAGGAGGCTATCAGGAGGGTACTTGAGGCTACAGCA TGAATTGGAGGCATGGTTTGGCAGCTGGGGCTGGGAGGGTTATTAGAATTTTTTGTAAGCTTCCTTGAAAATCTCCTCTT GACTTTTCAAAATTTGTACTCTTTTTCCTTGCTAGGTTTTCCTAAGGGGGGTTTTATCCTAGTAAGGTTTTAATGAGGCT TGTTTTGTTAAGTCTATTTTCAAGGAGGTATTAGGTGGGGTAGTTTCGTCTTGTTTAGGATCCTTGTTTTTTTGTACTTG CTAGCTCTTAGCTTTTCTATTCCTTACTCTTCTTTCTCTTTGTATTGGGTTGAAGTACCCCTTGTATTTCTATTCAATAT AATTCTTATTGCCTATCAAAAAAAAAATTGCC
CDS sequence (LotjaGi1g1v0786500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCGATTCAAAGAGGAAAAAGAAGCAAAGAAGGAAGCTTTTAGAAAATATCTGGAATCAAGTGGAGCTGTTGATGC TCTCACCAAAGTTCTTGTTGCTTTATATGAGCAAAATGACAAACCTTCTTCTGCACTTGAGTTCATTCAACAGAAATTGA GCTGTCCTTCCATCTCAGAGTATGAAAAATTGCAAGCTGAATTCTCTGATCTGCAAATTAGATATAATGAGCTTCTTGCT GCACATCACACCACTTGCAAAGAGTTGGAAGAAATGAAAAGCTCGCATGCCTTGGCAATGGCATCTTCCAAGGAAACAAC TGATATTGAACCCCCTAAAGATGTGCTCTAA
Protein sequence (LotjaGi1g1v0786500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRFKEEKEAKKEAFRKYLESSGAVDALTKVLVALYEQNDKPSSALEFIQQKLSCPSISEYEKLQAEFSDLQIRYNELLA AHHTTCKELEEMKSSHALAMASSKETTDIEPPKDVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 97 | 94 | 3.5E-43 | – | |
| PANTHER | 4 | 97 | 94 | 3.5E-43 | ||
| PRINTS | 9 | 19 | 11 | 9.4E-16 | – | |
| PRINTS | 19 | 33 | 15 | 9.4E-16 | – | |
| PRINTS | 33 | 47 | 15 | 9.4E-16 | – | |
| Coils | 61 | 81 | 21 | - | – | |
| MobiDBLite | 97 | 116 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0786500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…