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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0789700 |
| Transcript ID | LotjaGi1g1v0789700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G46300.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|G7L402|G7L402_MEDTR Late embryogenesis abundant hydroxyproline-rich glycoprotein, putative; Found in the gene: LotjaGi1g1v0789700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136181364..136184264) extracted from Lotus japonicus Gifu genome v1.2.
CCACTTTAGAAAAGATTTTATTAAGAAAGGAAAATGCCTTTTTTCCTTTTTTGTATTTAACAACAAACTATTGATAAAAA TAAAAAGTTGCAAACTGAATATTTATTTTGTTCTAAAATTAAAAATAGCTTTCCATGGATTCATGCAGTTCCCTTGCCTT TTTCTTACCTTCTCTCTGTCTCTGTGTCGCCCTCTCACAAACGTCTTAACAAATTTGTCCTCTTCCTCCTCCACTCCTGA CCAGAGACTCTCTGTCATTTCATCTTCCAATTCTCTTCTCTTATCCTTCAAGCAACTCTCATTTTCATTCCCTTCTTTTT CTTCTCCTTCCTCATCTCAGATTTCAATTTAACTCCACCAAAACCTTCCATTCTCATTCGTCATCTTCAATTCTAGTAGT TGCAAAAAATATACCAAAATTGATTCACATTTCCATTTTTCACCACCATTCATTTTCCCAAGCTTAACCATTTCTCGTTA CTCAATGACATTGACAACCCATAATTGATCTCATTTTTCCGATTCAGAGTTTTCATCTTTTCCAAAAAGCGCCATTCATT GATTAACCCACAAAACATAACACAGAAAGAAAGAAAAAAAAACCAATGCAATCACCAATGGATGCATCACCCCAACTGAA ACCACCGCCGCTGCAGAAACCACCGGGTTACAGAGACCCCACCACCCCACCTCTACAGACAACGCCGAAACCGTTTCCTC CGCCGCGGAAGGCCGCCCTCCCAACCACCTTCCGCCAGAAACGGAAGCGGCGCGGGTGCTGCCGCATATGCTGCTGCATC TTCTGCGTCATCTTCCTCGTCCTGATATTCGCCGCCGCCGTCGCCGCCGGCCTCATCTACATCGTTTACGACCCCGCCCT GCCGGTGTTCCACCTGGGCTCGTTCCGGTTCACGAAGATGAACGTTACCGAGAGTACCGACGGAGCCTACCTGGACGCCA ACACGACGGCGAGGGTGGAGGTGAAGAACCGGAGCAGCAGGATGGTGTGGCATTTCCAGGAGAGCAGCGTGCAGATTACG GCGGAGAATGGGGACCTGAATCTGGGGTCGACGAAGGTGGCGAGGTTTGAGGTGAAGCAGAAGAACAAGACGGATGTGAA GGCGGAAACAACCGTGAAGGGGGAGGCGTTGGATGAGAGGCAGAGGAGGAAGCTGAAGGGGACGTTTGATGCGAAGGCTT TGGTGCCCACTGTGGAGGTTCAAACCAGAACGGGTGTGAGCATGCAGGGTTGGAAATCTGGTTCGATTCCTGTTACTGTC GTCTGTGGTGGTGTCTCCCTGAAGAACCTCGAAAATGGAGACATGCCCCAATGCTCCTATACTCTCTTCAAATGGTAACT AACATTTCTAGTTATAATCTTCTCTCTATTGGTAATTTTGAGTGTTATCTATGTTTTGATATACAACTCCTCTTGTAAAT GGTATAAATCTATTGGTCATTTTTTCTATGGCTTAATGCACTAATGAGGTGAAGAATTAATCTCACAGCTACCGATTGTG GAATACAATAATTAACACCGAAAAACTTACATCTAACTTATTTTTCCTCAAAATAAATTACTCACAGTTTCTCTCAAATA TTGATTCATTGATTCTGACTTAGAATGTAGAACTATTTTGAAACATGGCATACCCATGACTTGATTCATGTTGCTTTTCA TTAAGACTTTCACTCATGTGGGAACTAAAGACATGTGTTTCTCAGTTTCTCTGTATGGTTATGTTCAAAACTTACCATGC CTTCTTGCTGGCCAATTCTTTAACGTTAACCGCATTTTAGATAGGTATGTTTGGATACTTGTTGACATCGGTGCTAACGG ACTCCGAATGATATCCAAACACACATTGAATGATTGATGATCCAAATCTTCTAAGGGGTGTGTTTGGTATGAGTAAAAAA TGTTTAAGATAAGTGTACTAAGATGTTACACATTCTTTACTTCCCTCCCATGCCTTTCCGGACCAACCCGGGTCTGTCCC CGAAAGTCTCTCTACATTTTGGTAGTAGAGCATGCAAAATCATCTTTCTCAATCAATAAGTTATAGACATGAAATTTCAC ATGACAATATCATGTATATATATATATGGGGAATCTTAATCCCTATCAGCTGCTATTATGAAATAATATGTGCTATTGTT AATTGAGTTGAGGTTGTAACCTTGTTATCTACTACTAAGTGAATCCTGCACCGAAATCACTTCTGCAACAAAAAAAATGT AAATCCAAATTAATGGCCAGCTAACATGTCTCTTGCATTGTGCTCATTGCATGGATTTTCAAATTCATGTTTTTATATTA TCTTGAATATGTCTTTGGGTTTACTTAGAATATGTCAATTCTGTTTCTTCAAGGGGGAGGGAGGATGGTTATGCTAGCCA CGAACGATTGACTATTCTAATTGAAATTGTTGCTTTGCTTTTGATTGATCACAGGATCAAAATACCGCGATGAGTTGGGG ATGTGTTGATTGATGATCCATCGTGCAATTCAGAGGTGAAGGCTTTGTTATCAAATTGGATTACACCTAAATTATTTGTA TACACCTTTCTTTATCTCTTTTCAAAAAGAAAAAAAAATTGCTTAGTAAAAGGTATACAGCAGTTCAATTTGCTGCTTGG TTCTCCCAAATGTGTAGTGGGATGCACATAAGTTCATACATGAGGTTGTATTTATCAAACTATTTTTTTTTAATGTAGTT GTTAATAGGAATCCTCACTCAATCACTCCAGAAGAGTTTCTATTTCTTCTCTTTTCAGTAAAAAAAAAAAAACCATAATC AATGTGGTGGGGGCACCTTGCCCATATTGGATTTGCCAAGAAACTTAAAGCATGTTTAGACCAACTTATTTTTATTCAGA AGCTTCTCATAAGCTCTAGCG
CDS sequence (LotjaGi1g1v0789700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCACCAATGGATGCATCACCCCAACTGAAACCACCGCCGCTGCAGAAACCACCGGGTTACAGAGACCCCACCAC CCCACCTCTACAGACAACGCCGAAACCGTTTCCTCCGCCGCGGAAGGCCGCCCTCCCAACCACCTTCCGCCAGAAACGGA AGCGGCGCGGGTGCTGCCGCATATGCTGCTGCATCTTCTGCGTCATCTTCCTCGTCCTGATATTCGCCGCCGCCGTCGCC GCCGGCCTCATCTACATCGTTTACGACCCCGCCCTGCCGGTGTTCCACCTGGGCTCGTTCCGGTTCACGAAGATGAACGT TACCGAGAGTACCGACGGAGCCTACCTGGACGCCAACACGACGGCGAGGGTGGAGGTGAAGAACCGGAGCAGCAGGATGG TGTGGCATTTCCAGGAGAGCAGCGTGCAGATTACGGCGGAGAATGGGGACCTGAATCTGGGGTCGACGAAGGTGGCGAGG TTTGAGGTGAAGCAGAAGAACAAGACGGATGTGAAGGCGGAAACAACCGTGAAGGGGGAGGCGTTGGATGAGAGGCAGAG GAGGAAGCTGAAGGGGACGTTTGATGCGAAGGCTTTGGTGCCCACTGTGGAGGTTCAAACCAGAACGGGTGTGAGCATGC AGGGTTGGAAATCTGGTTCGATTCCTGTTACTGTCGTCTGTGGTGGTGTCTCCCTGAAGAACCTCGAAAATGGAGACATG CCCCAATGCTCCTATACTCTCTTCAAATGGATCAAAATACCGCGATGA
Protein sequence (LotjaGi1g1v0789700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSPMDASPQLKPPPLQKPPGYRDPTTPPLQTTPKPFPPPRKAALPTTFRQKRKRRGCCRICCCIFCVIFLVLIFAAAVA AGLIYIVYDPALPVFHLGSFRFTKMNVTESTDGAYLDANTTARVEVKNRSSRMVWHFQESSVQITAENGDLNLGSTKVAR FEVKQKNKTDVKAETTVKGEALDERQRRKLKGTFDAKALVPTVEVQTRTGVSMQGWKSGSIPVTVVCGGVSLKNLENGDM PQCSYTLFKWIKIPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 60 | 60 | - | – | |
| MobiDBLite | 1 | 48 | 48 | - | – | |
| MobiDBLite | 8 | 43 | 36 | - | – | |
| PANTHER | 19 | 251 | 233 | 1.1E-78 | – | |
| PANTHER | 19 | 251 | 233 | 1.1E-78 | – | |
| Phobius | 61 | 88 | 28 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 89 | 255 | 167 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0789700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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