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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0790700 |
| Transcript ID | LotjaGi1g1v0790700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136262271..136265909) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAGTAACAGCCAAAAGCATTCATTTATCTAGATATCACCACAATGCCATTGTAGGCAGGAATTGGAATTATAAATGA ATGACACGTGGCAGTCACCCACCGGGACATATTGCAGGCCGTGCCTCCCCCCTCCTCTATATTAAAATGTCTAGTCCCAA AGGCATACATGAAGCACGAGGTAGTGAAAGCAAAATAATTAATTTTTTTTGAAACTAAAATAATTAATAACTTAAGCACT AGAATTTGGGCATTCTCAACTAAAAAACACTTTAAACAACGCAAGATGTGATGCTGTTTGTGCTGTTTATCTACTCAGAA AAAAATTCCAAATTAATTAATTAGATTGGAAGATAGAGAAAGTGGAGGTTTCTTTTCTCAAAGCAAGACGAATGGAGATA CATGGTCCAAAAGGACTGTGAGCTCTGGTTGTGTCTCATAGGCATTGCTGGTCTCTGAACACAAAGGAATCTTTTCTTTT AGACGACAGCAGGGAATCTATGGATAAAAGCCGCAGTGACAGTGGCAGGAGGTAGCGGTTCACTGTTGTACCAGACAAAG CATATGTGACAACTGTACATTAAAAGGGAAAGAATGCAATATATGAAAGGACTGGATATTTATACTGTGAAAATAGGAAA ATAATTGGTCCTTCATTCATGCATTGTTAGTCTTTCAGTCACTTATTTCCTCTGTAACAAAAAAAAAAGTCTTTCAGTCA CTAAACGTGCCTACATTAATACATAGTCCCGTTTAATGTGGTTGTTAATGTGCCTATGGGCTGTGGCGGTATACATCATG TAGTATGTATAGTAGAAATATAATTCTTGGAAACCAAATCGATGGAGGTGAGTAGTGGTGTGTTTCATTAGTGGGCTTTG GGTTGGCTCATTTTTTAGTAATATCTCATGGAAAAGCATAAAAAAAAAGGGTCAGCATATGGAACCATTGAACCCCACTT TTGGGGTAAAGGGTCCTCCTATAAGTACAAGGTGTTTTATTTTCCTCAAGGACCAAGGATTGGATACACTTAAAAAATTC ATTAAAAATTCTGAAGCTAGGAACGAAAGAGTTTTGCTGTGGATCGGTGTTTGTGGCTGGCTTACATAGAGATATAGGTA TTTCTCCTCATCACTCTACTCTACTATGGCATTACTTTAATATGTCATTGTTGCTGCTCATGTATCCTAAATAATTATAG ACTTGTCTTTACTGTTTTGTTTCAAATCTTTCCCTTTATTTTCATTTCATTTTGCTGTTCCTTCTCCATTCTTAGAGTAA TAAAAATGAGATAGGAAAAAATTCATGCACAGCAAAGAAAAAAAAATCAATTATCTTAGACATTTACACTGAGAAATTGA ACTATGCTAAACTAACACTTAAATGCAGAAAAGAGGAAGGTAATATCTCACCAATCCTCTTTCCCACCGGATCTGGTCTG CCTCCGCCAAAATCATCACTAAGCAGATGTTGAACCCGAGTATTACGGCTGCGGCCTTGGTGTTGTGGTGTAGTGAGGTA GCTAGGTTTCAGAGAAGAAAAGAAAAAGAACAGGAAAAAGAGGAAGAAACGAAACAGAAACAGAAACAGAAGCAGAGAGA GAGAGAACGTGTAAAGGGGAATGAATTGTTTGTTTCTTTTTATGTTCTTTACCATTTTTTCTCCTTTTTGTTGGGTCTGC TGTTTGTTTTTTCGTTGGTTTCTTCATAGCATTATGGGCCTTTTTTATTTGAATCATGGCTTAGTTCCGTTTTTGGTACA ATTGTATGGATTTAATTGCTATTAGCTATTAAAATATGAATACTTAGGGGTTGCAATTATTATTTGTTCTTCCTAACTAA TTATTTTCTTAAGAAAATCTCAAAATTACTTTCTCCAATATTGTTAAGAATTTATCATAAAATGCTAAAATCAAATCCTC TTTGCAAATAAAAAAAAATAACAATCTTTTCTTAATCAGATAATGGTTTTCATTCATTAATTGTTGTTGGCAGGTCCAGA TATGGAGGCGATGACTGCTTCCTTAGAGAGGTCTCTTAAAAATTGTTCCTTAAACCACCAGACAAGCTGTAGGGAAGACG ACCCAACCACTGATGCAGATGTAGATGCAGATGTAGGCATAGGAATCTCATCCAGCTCAGATGATGTGCCGGTGCCACTG GATAATCATTTCTCCAACTCTGACACCACTTTAGAGCTCAATTCCCACATCTCACTCCCACACCATTGGGAACAATGCCT AGATTTAAAGGTTCAATTCTTCTCTTTTTCTCAATTTTCCCCTCCCCTCCCCTTGATTTTGCAATTTTCTCTTGTTTCTT CCTCTCTCTCTTCCTCTCCTTTTCCTTTATGAGGAAGGGGAAACTTTTCTAGGTTGGTTTGACCATCCGTAGAATCATAC ATAGCATATATGTAGGTTATGTTCTCTTATTAGGGAAGAGGGAGGAATCAAAGTGAAATTTATATTACAAAGTAAATATT AGATCGATCGAGTATGGTGTTTTTACTTTCTTTCCTTTAATATATCCTATTCTGAAATTCTGATGGAAGGGGTTGAAATT GATAAGTTCTTGGGTGGGTTGTATATTTTGTCTAAATTTGTTAGTTATTGAACTGAAAAGATCATATCTATTTTGAAGCG AGTGTGAATGAATGAATAATTGACTACTTAGCCGTCTTACAGACGGGGGAAATTTATTACATAAACTGGAAGAACGGGAT GAAAGCAAAGGAGGATCCAAGAAGGACATCAGAATATAATGTGAATAATAGGTATTATGAGTCTGAAGAAGAGAGTCGGT ATGACAGCGAAGAGTCTTCATCAGAATCATGCACTTCTTCATCCAAAGAGCACTATGCCCCTCTTTCTTGTGTAGAGAAA CAGAATGTTCTGGTGGTGGCTGGATGCAAGAGTTGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGTCCAAA ATGTAGTGGTCAACTCCTCCACTTCGATCGATCCGAAAATGGCTCCCCATGATTAATTGCCTCTTCCCTTGTCTCAAGTT CCACCTTGTTTTTCCCTTTATTTTTTTTTTACTTTTTCAACTTTTTGTTCTATTTTTTCCTTTCTTTTATTTTTGCTTTT GCTTGCTACCCCTGTGGTGAACTTATAGTTCTCTCCTTTTGTTTATTACTAGTATATATATTTCTCTGCTTTTGCTTTGC ACAGTTGAATGTTTGATTAAAACATTAATAATATAATTATAAGTTAATATATATTATTACATATGTTTGAAATATTAATA TAAATCAATATCAAATAATCATCTGAATTAAAGCAACCATATGTAGTGTAAAAAATTTACGATATGCATGTTTGGATCAA TTTCTATTTGGTAATAATTAATTAGTTTGGAACAAATAAAGTGAAAGACTATGCTCCGGTGCATGTGACATTTTTTTATC TGCTTATGATGTAACTACACAAAGCATGATGGTAACATCACCAAACTATAAGCCCACGTGCAAAAATATTTGTAATGTTG ATTGCAAATATAAAATCCTACATACTCTACGTATTGATGTGAAAAGAATTTGTTGCCTTAATATATCAATTTCTGCTTAT TATTATGTCACATAAAATTCTTTCACGTGGCCACATGAG
CDS sequence (LotjaGi1g1v0790700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCGATGACTGCTTCCTTAGAGAGGTCTCTTAAAAATTGTTCCTTAAACCACCAGACAAGCTGTAGGGAAGACGA CCCAACCACTGATGCAGATGTAGATGCAGATGTAGGCATAGGAATCTCATCCAGCTCAGATGATGTGCCGGTGCCACTGG ATAATCATTTCTCCAACTCTGACACCACTTTAGAGCTCAATTCCCACATCTCACTCCCACACCATTGGGAACAATGCCTA GATTTAAAGACGGGGGAAATTTATTACATAAACTGGAAGAACGGGATGAAAGCAAAGGAGGATCCAAGAAGGACATCAGA ATATAATGTGAATAATAGGTATTATGAGTCTGAAGAAGAGAGTCGGTATGACAGCGAAGAGTCTTCATCAGAATCATGCA CTTCTTCATCCAAAGAGCACTATGCCCCTCTTTCTTGTGTAGAGAAACAGAATGTTCTGGTGGTGGCTGGATGCAAGAGT TGTCTCATGTATTTCATGGTGCCCAAACAGGTTGAAGACTGTCCAAAATGTAGTGGTCAACTCCTCCACTTCGATCGATC CGAAAATGGCTCCCCATGA
Protein sequence (LotjaGi1g1v0790700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAMTASLERSLKNCSLNHQTSCREDDPTTDADVDADVGIGISSSSDDVPVPLDNHFSNSDTTLELNSHISLPHHWEQCL DLKTGEIYYINWKNGMKAKEDPRRTSEYNVNNRYYESEEESRYDSEESSSESCTSSSKEHYAPLSCVEKQNVLVVAGCKS CLMYFMVPKQVEDCPKCSGQLLHFDRSENGSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 137 | 137 | 8.4E-35 | – | |
| PANTHER | 1 | 137 | 137 | 8.4E-35 | – | |
| MobiDBLite | 19 | 53 | 35 | - | – | |
| SUPERFAMILY | 68 | 104 | 37 | 6.45E-8 | ||
| Gene3D | 70 | 109 | 40 | 8.1E-6 | – | |
| MobiDBLite | 110 | 137 | 28 | - | – | |
| PANTHER | 126 | 188 | 63 | 8.4E-35 | – | |
| PANTHER | 126 | 188 | 63 | 8.4E-35 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0790700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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