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IPR036020 is a WW domain superfamily.
<p>Synonym(s): Rsp5 or WWP domain</p> <p>The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded β-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [[cite:PUB00005431], [cite:PUB00000239], [cite:PUB00001680], [cite:PUB00001690]]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [[cite:PUB00004872], [cite:PUB00007124]]. It is frequently associated with other domains typical for proteins in signal transduction processes.</p> <p>A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Flowering time control protein FCA; TAIR: AT2G47310.1 flowering time control protein-related / FCA gamma-like protein; Swiss-Prot: sp|O04425|FCA_ARATH Flowering time control protein FCA; TrEMBL-Plants: tr|I1JQT8|I1JQT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0758000_LC | 11 | ||
– | RNA binding protein, putative; TAIR: AT2G47310.1 flowering time control protein-related / FCA gamma-like protein; Swiss-Prot: sp|O04425|FCA_ARATH Flowering time control protein FCA; TrEMBL-Plants: tr|I1JQT8|I1JQT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0758000_LC | 19 | ||
– | RNA binding protein, putative; TAIR: AT2G47310.1 flowering time control protein-related / FCA gamma-like protein; Swiss-Prot: sp|O04425|FCA_ARATH Flowering time control protein FCA; TrEMBL-Plants: tr|I1JQT8|I1JQT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0758600_LC | 19 | ||
– | ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 | 6 | ||
– | ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 | 6 | ||
– | ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 | 6 | ||
– | ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 | 6 | ||
– | ATP-dependent RNA helicase DB10; TAIR: AT5G14610.2 DEAD box RNA helicase family protein; Swiss-Prot: sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46; TrEMBL-Plants: tr|K7KNL8|K7KNL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0244000 | 29 | ||
– | Pre-mRNA-processing protein 40C; TAIR: AT3G19840.1 pre-mRNA-processing protein 40C; Swiss-Prot: sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C; TrEMBL-Plants: tr|K7LP03|K7LP03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0526200 | 20 | ||
– | SacI-like domain protein/WW domain protein; TAIR: AT3G59770.1 sacI homology domain-containing protein / WW domain-containing protein; Swiss-Prot: sp|Q7XZU0|SAC9_ARATH Probable phosphoinositide phosphatase SAC9; TrEMBL-Plants: tr|K7K890|K7K890_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0067700 | 19 | ||
– | RNA binding protein, putative; TAIR: AT4G16280.2 flowering time control protein FCA; Swiss-Prot: sp|O04425|FCA_ARATH Flowering time control protein FCA; TrEMBL-Plants: tr|I1MRT0|I1MRT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0332700 | 22 | ||
– | Methyltransferase; TAIR: AT1G45231.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|P85107|TGS1_RAT Trimethylguanosine synthase; TrEMBL-Plants: tr|V7CRN8|V7CRN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0027700 | 15 | ||
– | Methyltransferase; TAIR: AT1G45231.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|P85107|TGS1_RAT Trimethylguanosine synthase; TrEMBL-Plants: tr|V7CRN8|V7CRN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0027700 | 15 | ||
– | Pre-mRNA-processing 40A-like protein; TAIR: AT1G44910.1 pre-mRNA-processing protein 40A; Swiss-Prot: sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A; TrEMBL-Plants: tr|A0A0B2Q6I5|A0A0B2Q6I5_GLYSO Pre-mRNA-processing factor 40 like A; Found in the gene: LotjaGi5g1v0035800 | 21 | ||
– | Pre-mRNA-processing 40A-like protein; TAIR: AT1G44910.1 pre-mRNA-processing protein 40A; Swiss-Prot: sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A; TrEMBL-Plants: tr|A0A0B2Q6I5|A0A0B2Q6I5_GLYSO Pre-mRNA-processing factor 40 like A; Found in the gene: LotjaGi5g1v0035800 | 21 | ||
– | Polyglutamine-binding protein 1; TAIR: AT2G41020.1 WW domain-containing protein; Swiss-Prot: sp|A2T806|PQBP1_PONPY Polyglutamine-binding protein 1; TrEMBL-Plants: tr|K7K8S1|K7K8S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0132500 | 14 | ||
– | Pre-mRNA-processing 40A-like protein; TAIR: AT1G44910.1 pre-mRNA-processing protein 40A; Swiss-Prot: sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A; TrEMBL-Plants: tr|A0A151U7I4|A0A151U7I4_CAJCA Pre-mRNA-processing factor 40 isogeny A; Found in the gene: LotjaGi5g1v0320000 | 21 | ||
– | Pre-mRNA-processing 40A-like protein; TAIR: AT1G44910.1 pre-mRNA-processing protein 40A; Swiss-Prot: sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A; TrEMBL-Plants: tr|A0A151U7I4|A0A151U7I4_CAJCA Pre-mRNA-processing factor 40 isogeny A; Found in the gene: LotjaGi5g1v0320000 | 21 | ||
– | WW domain protein, putative; TAIR: AT3G13225.2 WW domain-containing protein; Swiss-Prot: sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4; TrEMBL-Plants: tr|K7LAD5|K7LAD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139900 | 12 | ||
– | WW domain protein, putative; TAIR: AT3G13225.2 WW domain-containing protein; Swiss-Prot: sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4; TrEMBL-Plants: tr|K7LAD5|K7LAD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139900 | 12 | ||
– | WW domain protein, putative; TAIR: AT3G13225.2 WW domain-containing protein; Swiss-Prot: sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4; TrEMBL-Plants: tr|K7LAD5|K7LAD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139900 | 12 | ||
– | WW domain protein, putative; TAIR: AT3G13225.2 WW domain-containing protein; Swiss-Prot: sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4; TrEMBL-Plants: tr|K7LAD5|K7LAD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139900 | 12 | ||
– | ATP-dependent RNA helicase DeaD; TAIR: AT3G06480.1 DEAD box RNA helicase family protein; Swiss-Prot: sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40; TrEMBL-Plants: tr|A0A151T665|A0A151T665_CAJCA DEAD-box ATP-dependent RNA helicase 40; Found in the gene: LotjaGi6g1v0263600 | 30 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 4.35 |