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IPR036020

Description

IPR036020 is a WW domain superfamily.

<p>Synonym(s): Rsp5 or WWP domain</p> <p>The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded β-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [[cite:PUB00005431], [cite:PUB00000239], [cite:PUB00001680], [cite:PUB00001690]]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [[cite:PUB00004872], [cite:PUB00007124]]. It is frequently associated with other domains typical for proteins in signal transduction processes.</p> <p>A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Associated Lotus transcripts 23

Transcript Name Description Predicted domains Domain count
Flowering time control protein FCA; TAIR: AT2G47310.1 flowering time control protein-related / FCA gamma-like protein; Swiss-Prot: sp|O04425|FCA_ARATH Flowering time control protein FCA; TrEMBL-Plants: tr|I1JQT8|I1JQT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0758000_LC 11
RNA binding protein, putative; TAIR: AT2G47310.1 flowering time control protein-related / FCA gamma-like protein; Swiss-Prot: sp|O04425|FCA_ARATH Flowering time control protein FCA; TrEMBL-Plants: tr|I1JQT8|I1JQT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0758000_LC 19
RNA binding protein, putative; TAIR: AT2G47310.1 flowering time control protein-related / FCA gamma-like protein; Swiss-Prot: sp|O04425|FCA_ARATH Flowering time control protein FCA; TrEMBL-Plants: tr|I1JQT8|I1JQT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0758600_LC 19
ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 6
ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 6
ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 6
ATP-dependent RNA helicase; TAIR: AT2G33510.1 ATP-dependent RNA helicase; Swiss-Prot: sp|P46937|YAP1_HUMAN Transcriptional coactivator YAP1; TrEMBL-Plants: tr|V7AZJ7|V7AZJ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0790700 6
ATP-dependent RNA helicase DB10; TAIR: AT5G14610.2 DEAD box RNA helicase family protein; Swiss-Prot: sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46; TrEMBL-Plants: tr|K7KNL8|K7KNL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0244000 29
Pre-mRNA-processing protein 40C; TAIR: AT3G19840.1 pre-mRNA-processing protein 40C; Swiss-Prot: sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C; TrEMBL-Plants: tr|K7LP03|K7LP03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0526200 20
SacI-like domain protein/WW domain protein; TAIR: AT3G59770.1 sacI homology domain-containing protein / WW domain-containing protein; Swiss-Prot: sp|Q7XZU0|SAC9_ARATH Probable phosphoinositide phosphatase SAC9; TrEMBL-Plants: tr|K7K890|K7K890_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0067700 19
RNA binding protein, putative; TAIR: AT4G16280.2 flowering time control protein FCA; Swiss-Prot: sp|O04425|FCA_ARATH Flowering time control protein FCA; TrEMBL-Plants: tr|I1MRT0|I1MRT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0332700 22
Methyltransferase; TAIR: AT1G45231.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|P85107|TGS1_RAT Trimethylguanosine synthase; TrEMBL-Plants: tr|V7CRN8|V7CRN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0027700 15
Methyltransferase; TAIR: AT1G45231.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|P85107|TGS1_RAT Trimethylguanosine synthase; TrEMBL-Plants: tr|V7CRN8|V7CRN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0027700 15
Pre-mRNA-processing 40A-like protein; TAIR: AT1G44910.1 pre-mRNA-processing protein 40A; Swiss-Prot: sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A; TrEMBL-Plants: tr|A0A0B2Q6I5|A0A0B2Q6I5_GLYSO Pre-mRNA-processing factor 40 like A; Found in the gene: LotjaGi5g1v0035800 21
Pre-mRNA-processing 40A-like protein; TAIR: AT1G44910.1 pre-mRNA-processing protein 40A; Swiss-Prot: sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A; TrEMBL-Plants: tr|A0A0B2Q6I5|A0A0B2Q6I5_GLYSO Pre-mRNA-processing factor 40 like A; Found in the gene: LotjaGi5g1v0035800 21
Polyglutamine-binding protein 1; TAIR: AT2G41020.1 WW domain-containing protein; Swiss-Prot: sp|A2T806|PQBP1_PONPY Polyglutamine-binding protein 1; TrEMBL-Plants: tr|K7K8S1|K7K8S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0132500 14
Pre-mRNA-processing 40A-like protein; TAIR: AT1G44910.1 pre-mRNA-processing protein 40A; Swiss-Prot: sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A; TrEMBL-Plants: tr|A0A151U7I4|A0A151U7I4_CAJCA Pre-mRNA-processing factor 40 isogeny A; Found in the gene: LotjaGi5g1v0320000 21
Pre-mRNA-processing 40A-like protein; TAIR: AT1G44910.1 pre-mRNA-processing protein 40A; Swiss-Prot: sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A; TrEMBL-Plants: tr|A0A151U7I4|A0A151U7I4_CAJCA Pre-mRNA-processing factor 40 isogeny A; Found in the gene: LotjaGi5g1v0320000 21
WW domain protein, putative; TAIR: AT3G13225.2 WW domain-containing protein; Swiss-Prot: sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4; TrEMBL-Plants: tr|K7LAD5|K7LAD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139900 12
WW domain protein, putative; TAIR: AT3G13225.2 WW domain-containing protein; Swiss-Prot: sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4; TrEMBL-Plants: tr|K7LAD5|K7LAD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139900 12
WW domain protein, putative; TAIR: AT3G13225.2 WW domain-containing protein; Swiss-Prot: sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4; TrEMBL-Plants: tr|K7LAD5|K7LAD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139900 12
WW domain protein, putative; TAIR: AT3G13225.2 WW domain-containing protein; Swiss-Prot: sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4; TrEMBL-Plants: tr|K7LAD5|K7LAD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0139900 12
ATP-dependent RNA helicase DeaD; TAIR: AT3G06480.1 DEAD box RNA helicase family protein; Swiss-Prot: sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40; TrEMBL-Plants: tr|A0A151T665|A0A151T665_CAJCA DEAD-box ATP-dependent RNA helicase 40; Found in the gene: LotjaGi6g1v0263600 30

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 4.35