Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0792600.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0792600
Transcript ID	LotjaGi1g1v0792600.1
Lotus japonicus genome version	Gifu v1.2
Description	Acid phosphatase/vanadium-dependent haloperoxidase; TAIR: AT3G61770.1 Acid phosphatase/vanadium-dependent haloperoxidase-related protein; Swiss-Prot: sp\|O32107\|YUID_BACSU Uncharacterized membrane protein YuiD; TrEMBL-Plants: tr\|A0A072U4K7\|A0A072U4K7_MEDTR Acid phosphatase/vanadium-dependent haloperoxidase; Found in the gene: LotjaGi1g1v0792600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:136423558..136427652) extracted from Lotus japonicus Gifu genome v1.2.

AAAACGAATATACCAAATTTATCAATCGAATGATGCTTTGCAATTGCATAGAGACAAAGGAAAGAGCAGCTTCTGGTTTC GTGTAGATGCTTCTTCTTCCTTTCCCTCTTTTTTGAAATGCTGACTGAACCAAAACATTCAACAAAACCCCTCTCATGGA CTCTCTGTTTTCTCTAACCCCAAAACTCCGATCATTCAATTCCAACCCTCTTCTTCTTTCCACCAAGTTTCACTCTAGAC CCACTTCCATCTCTTCTTCTCAATCTCCATCAACCTCCAGTTCCAGTCCCGAAGACAATCCCCGAAGAATCCCCACCTGG GTTTCCTTCCCCATCGTGCCAACCCTTAAAAAGGTGGCAGCTCTACGAACCCAGAAGAAGGGTTCGCATGTTTGTTGTTA CTCGCAGAACGGAGGGTTGGGAGTGGCTTTGTTGAGCATTACAACCAACGCTAAGGTTCGGTTCAGTCCCTTTGTGGCTA CATTGGCTCGGAACCCCACGTTTGTTTCGGGGTTTGTTGCATGGTTTGTAGCACAATCCACCAAGGTATTACTGAATTTC TTCGTTGAAAGGAAATGGGATTTGAGGCTCTTGTTTGCTTCTGGTGGGATGCCTTCTTCTCATTCCGCACTCTGCACCGC CCTCACCACTTCCGTTGCCCTGTGCCATGGTGTTGCTGATTCCCTGTTTCCTGTTTGTTTGGGGTTTAGCCTTATTGTCA TGTATGATGCAATTGGTGTTAGACGACATGCTGGCATGCAAGCTGAGGTAACCCTCTAATTATTCTTTTCAGTTATGCTA AGTAAAGTAGTGTGTGTGTTTGGAAATTCTGTTAGGGAAGTGATTCTGTGAGAAGCTATTATGAGGTAGCTTTTGTAGGG GAGAACTTAATTAAAACAAAGTACTACAACTTAGCAAGCCAGATTATACTTTGAGATTATTTGCTATGTGAAATACTCTT CAGTCAACCTTAGCATGGTTATGGAATGATTGAAATGCTGAGAGTAGTTGGTTCTTGTTTGTAAACATTTGCTTATTACA CACATTCTTCCTCCGCCATGGCCACTGACACTGCTAGCATCATCCACCATACACCCTTCTACTTGATATCTGCATATAAC TAACTCACACCCACTTGACCCAACCTGTGTAGCCAACTGTCTGCTGTCTACTTTTTGTGACTTTTGAACTCATATCACCT ACTTTGAGCCTTCTCTTGTAAGCCTTTCATATCTTGGATCAGTGTTACAGTTGATCAATGGGTTCCCTCAGACAATATCC TTGAGTGTTCCTTTCTTTTTATGAAAATGGGGTATTACTTTACTTGTTTTGCAAACAAGTAGAAATTATGTCTAACATAT TGTATGCTTAGTGGAATCTTCACAAATACATAATATGCATGATTTACCTTAGTTCTTTGAAGTATTTTTAAAAAATGGTA TAATGTTGATATGCGTCTAAATGCTCCAAGATTATCAGTTTGGTGTGAAAACCTTGACTTTTTGTTTGACTTTGCTTTGT ATATCATCATGTATCTATCTAATTTTGAATTTTAATCATCCCTTGCTTGGGTTTTCTGAAAATGTCAAAGATATAGATAC TATCACTTGTACTCTTTTGAGCCAGCAATGTTATCTATTGTTATTGTTCCTTAGGGCTAGGGGGATCTCTAACTTTAATT GTGCAACAGATTTGTTGTAACTTGCTTGGTATCTATGTGGTAATTTGACTATCTTTACCTTTTGCTCGGTTAGATAATCT TTGACCAGAAAATTGTGTGACTTTACTCAGGTGCTTAATATGATTGTTGCTGACTTGTTCCAAGGTCATCCTATTAGTGA AAGGAAACTCAAGGAACTTCTAGGTCACACTCCATCTCAAGTTGTTGGTGGTGCTTTGCTTGGGCTTTTAGTAGCATGTT TTTGTTGTCAAGCTTGCGTTCTTGTGGCTTAGGCGATCATATTGCAGTTTTGATCAAACTGTATTGATAACACATTATTT GCTTTGATGCAGCCTTCTGGTATATGCAGTGGGCTGCATAATTGGCACGCTATTCAAGGTGAAATACAACATCATGATAG GATGAAAGGTTTAAATTTGTTTTTAGTCCCTAAAAAATAAGGGTCATCTAGTTTTAGTTCTTGAATTTCAAAATTGAGGG TTTAGCCCATGAACTAATTTAATTACATTGTTTTGGCCATTGTTGTTGACTCTGGTGCCGACGTGGCTAACAAAATCCTA ATCAGCACTGTCTCATGAACTCGTTCAATGATATGGCAGCTCATCTGATGTAGTTAATGATTTGGACCTATTAAGACACC TTCACGCCATCCTTTCTTCCTCTACCTTTCATCTTCATTTTCTCTATTTCCTCCCTTTGTACCTCCTCCTTTCCTTTCCC ATTTAACCCATTGAGTGTGTTGTGTTGTGTAGGATCTTCTAAGATAAAGCCTCCTTTTATCTTCAAGAAGTTTAAGATGT CAAAGCCCTAGGTTGCAGCTATGTAGTTTTTGGTGGTCAAAAGACTTGTGATTGTGGTCTATTGGCAACTCACGAACTTT CTCAGAGTGTTGAAGCTATGATGGTCATGAGTGCGAGTTCAATGGTCATGAGCCTCAAACAGAACGACATTGTGAGCAAC ATAAAAAAGTTTAGCTGACACGTGATGTCTTCAACGAATCTCTTGCAACAAGCATGGTCTTCACTTCACCATTTGAATCT CGTGCATCATGTCAAAATGCTGCTGAAGGATGTGTGGCAGGCGGTTGGTGATGGCCTACATGAAAGATGACGGTGCTAGA CCGATGTAGATCTTAATGGGGGAAGCTGAGGGGTAACGAGTACAACTCAAAGAATCTTCCACAATGTTCTACGGGATGCC CCACTTTTCTTAAAAGAATTCAGTTCAGTGAAACTCAAAAGCTAGACCATTCAATATTTGACTACCTTGATGGTATCATA ACCTATGACCATTTTTTGTTACACACAAAGGATTCGCAACTACTTTTAGTTTATTCATTGTCGCATTTAATATATTGATA ATATTTAATTTTGTTGACCATGACAAACACCTCGTCCTGGTCAACAAAATCAAATACTATTACTATATATATATATTTTT TTTTTATAGGCAAATGTTAGTGGTTAGTTGTTAGTAAGTTAGAAAATCCCTTCAAAGTTCCATTCCAGGATTCGAACCCT GGACCTTCCCCTCTCCACCCTTATGTCCCCTAGCTCTTACCACTTGAGCTAACCCTCGGGGACACTATTACTATATTAAT TGTGACAATGAATAAACTAGAGGTAATTGTGCATCTTTTGTGGCTAGCGAACACTGGCCATGTCAAGTACTTAAGAATCT AGCTTTGGAGGTTCCTTGAACTGAATTCTTTTAAGAATCGTGTGGGGATCATGTAGAACGATATTAACAGATTGAAAATG TTGAGTGTTAATTTATTGTGTCATGATTCCCTATAGAATCTTCGATTCGAATTCTCCCTCCTCGACAAACCCACTAAGAT CTCCAGTTTGTGTTGGTGTTTGGCAACGTAGTTATCAAGTGAGTTTAGAGCTCTGGTTTTCACTCTTTCCTTTTTGGTGG AAGCCTGGAAGGTTGAGGAAGAAAGTCCAAATCACCATTGAGTTAGCCATGTAAGTGTGCTGACTAGTAGTCTGTCAGCC ACATCAGTAGTTTTTTTTTTTTTTTAAATGAAGCCTAATACCATGTAATTAAATTAGTTCAGTGAATAAACCCTCTGGGT TTGAAAGTAGGTTACTGAAATTGTAAGACCCCTATTTTAGAGGGACAAAATATATTTAGCCTATTTAATTGTAGTGCCTA TCTAATTCCAGTGCCTTAAGTTCTTTTTTTTTTTTTTAAACCTCCAGTGCCTTAAGTTGAAAAGCTGATAATTGAATTTG CCATATGGAATGAAATCCTTGAAGACCCTCTGCATACTTTTTTGGAGAAGACCCTCGACATTAAACTGGGTTAATTGTCT TGTTATTCCAAGTTTATTCAATAGTGTTTGGTAGACACTCTTGAGTTGTCTACACCCAACCAAGAATGAGAGTATGAGAG GAAGAGTGGTGAGTG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0792600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTCTCTGTTTTCTCTAACCCCAAAACTCCGATCATTCAATTCCAACCCTCTTCTTCTTTCCACCAAGTTTCACTC TAGACCCACTTCCATCTCTTCTTCTCAATCTCCATCAACCTCCAGTTCCAGTCCCGAAGACAATCCCCGAAGAATCCCCA CCTGGGTTTCCTTCCCCATCGTGCCAACCCTTAAAAAGGTGGCAGCTCTACGAACCCAGAAGAAGGGTTCGCATGTTTGT TGTTACTCGCAGAACGGAGGGTTGGGAGTGGCTTTGTTGAGCATTACAACCAACGCTAAGGTTCGGTTCAGTCCCTTTGT GGCTACATTGGCTCGGAACCCCACGTTTGTTTCGGGGTTTGTTGCATGGTTTGTAGCACAATCCACCAAGGTATTACTGA ATTTCTTCGTTGAAAGGAAATGGGATTTGAGGCTCTTGTTTGCTTCTGGTGGGATGCCTTCTTCTCATTCCGCACTCTGC ACCGCCCTCACCACTTCCGTTGCCCTGTGCCATGGTGTTGCTGATTCCCTGTTTCCTGTTTGTTTGGGGTTTAGCCTTAT TGTCATGTATGATGCAATTGGTGTTAGACGACATGCTGGCATGCAAGCTGAGGTGCTTAATATGATTGTTGCTGACTTGT TCCAAGGTCATCCTATTAGTGAAAGGAAACTCAAGGAACTTCTAGGTCACACTCCATCTCAAGTTGTTGGTGGTGCTTTG CTTGGGCTTTTAGTAGCATGTTTTTGTTGTCAAGCTTGCGTTCTTGTGGCTTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0792600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSLFSLTPKLRSFNSNPLLLSTKFHSRPTSISSSQSPSTSSSSPEDNPRRIPTWVSFPIVPTLKKVAALRTQKKGSHVC CYSQNGGLGVALLSITTNAKVRFSPFVATLARNPTFVSGFVAWFVAQSTKVLLNFFVERKWDLRLLFASGGMPSSHSALC TALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNMIVADLFQGHPISERKLKELLGHTPSQVVGGAL LGLLVACFCCQACVLVA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	234	234	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	27	50	24	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	27	51	25	-	–
PANTHER	PTHR31446:SF25 View details on PTHR31446:SF25 Search for proteins/transripts with this domain View external data on PTHR31446:SF25	51	255	205	2.2E-117	–
PANTHER	PTHR31446 View details on PTHR31446 Search for proteins/transripts with this domain View external data on PTHR31446	51	255	205	2.2E-117	IPR003832 Show description in modal box View details on IPR003832 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02681 View details on PF02681 Search for proteins/transripts with this domain View external data on PF02681	112	245	134	2.9E-47	IPR003832 Show description in modal box View details on IPR003832 Search for proteins/transripts with this domain View on EBI InterPro Service
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	234	256	23	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	235	256	22	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	257	257	1	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0792600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…