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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0793700 |
| Transcript ID | LotjaGi1g1v0793700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT1G01250.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023; TrEMBL-Plants: tr|A0A140WWF5|A0A140WWF5_LOTCO AP2/ERF; Found in the gene: LotjaGi1g1v0793700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136506247..136508955) extracted from Lotus japonicus Gifu genome v1.2.
GGCCACCAGTGTGGAAATTGTGAATGGACCAACAACCACCACCGTGCCCCGACGATAATGTGACCGCCTCAGCCGCTGTG AGAGGCGGCACGCGCCACCCGGTGTACCGCGGAGTACGGAAACGGCGGTGGGGCAGGTGGGTGTCAGAAATTAGGGAGCC ACGGAAGAAATCGAGGATATGGTTGGGGTCGTTCCCGGTGCCGGAGATGGCGGCGAAGGCATACGACGTTGCCGCGTACT GCCTCAAAGGGCGGAAGGCGCAGCTCAACTTTCCCGACGAGGTGGACCGACTGCCGGTTCCGGCTACCTGCACGGCCAGA GACATTCAGGCGGCTGCGGCTAAGGCGGCGAGCATGATGTCGAAAGCCGCCGGTGAGAAAAGCAGCATTGCGACCGACGG AGACATCGGAGGCGGCGATGATTTCTGGGGTGAGATTGAGTTGCCGGAGCTAATGTGTTGCTGGAGTTCTCCGAGCGGGT CATCGTGGAATTCCTCCGGTGACACCACGGCGTGGCCGGAGGTTGAGCTTTTGCCGCTGCAACCCTTCATGGCGTGTCTA TAATCTGCTTGTTTTAATGCTGCTCAGTGGTTGGTAATTTGGTATGTTTCTTATATATAAATATATTTTGTTGTTATATT ATATGTGCCAACTCTTTGTGTTGTCATAAATAAATAAATTGCTTTATAGTATTTTTATCAAAATGCTTTCATTTTGTTCT GGGTAAATGGTCACTTTGGTCCTTGAAAGTGTCAACCGACTTCACATTCGTCCTCGAATGAATTTTATTCAGCTCGCGGT CCCCCAAAGTGGCAAACGTCCGTCACTTTAGTCCTTGACGTTAAAAAACACTAACAGACGTTAACAAATTCCTTTTTTAT TTATTTTTATCTGGAAATCATTAATTTAAATTTTAAAAAACAAATTAACTAAGAAATTGAATCCTAATCTCCTTCTCATC TTCTTCAGATTGTTTCTTTTTTCTTTCATCTTCTTCTTCAATCCATCCATCACCAACTTCACCATATCAACACATTAAAA AAAAAACCTTCATCCTATCATCTTCATCAGATCATTATCCTCTCCCATCATCTTCACCCAAATTCAGAACCCTTATCCTC TACCATTCATCTTCATGGTCAACTCTGTTTATGTTCCCTCCCAGTCACCTGTTTATGTCTCTGCATCTCTATTTCTCATT CACCATCTAAACCCCCCAAAACCCACGCTTCTGCCACCATCAAAGTTCACACCTTTCATACAAAATCAACAATTGCAGGT GGGTTTATCTTCAAAATCACACAGGCACAACGTTCAAGCACATTCCTACACTTTTCTCTCTCTCTCGCTCTCGATCTGGG ACCAGTTGTTCTGGGTTTATGTTTGAATATGAGTTTCACCTTCAAACCCAGATGAAACCTTGAAACTCAGATCTCAAAAT CAGATCTACATCGTAACCCATTTTGGTTGAGGTTGAGAGGAGGAGGGTTTTGAGGTTGAGAGGACGAGTGAGCAGAGGGT GGAGCGCGTTTGTGGGGGAAAGGTGGGGCCAGAGGAAAGAGTCATGGTGGCGTGTGCGGTGGTGGCGGAGGACGATTGCG GTCAGTCGCTGTTCACACTCTTCTCTTCAAGATTGTTATTTCCGGGATATTGGGGGATGAGTGGAGATGGGGAGAAGGAA ACGGTGAAGAAAAGGATTTTGAATCTGGGATCTGGTTGGGAAGAAGATGAATTTTAGTGGAAGAAGGAATGAGTGGAACC TAATTTTTTATTGTGGTTTTGAAGAAGTTTGAAACTGTTGATTGTGCTCACTGATTATGCTTTTCCCAGGTCTTATGGTG TTGGTGTCAAGCTTGGTGCATTCTTTTTCCGTTTTGCCGAGAGGTTTTGAGGTGCAAATTGATCACTTGGTATTTAGGGG TTTTTGTTCTCTTGGTTTGCTGAAGAATTCTTGCACGTTGTGGTTTAAGTGGAGGTACCAGATTAGTAACTTACATTGTT GCTCCTCTTGTTCTTTTCATGGCCTAAAAAGCTTAGTATTATTGCCCATGAAGCATAGTATTGTTGATTATTTCTGGGTG AAAGAGGTATGGGGTGATTGGAGGTGGGGGAGGAGAAGAAATGATGAAGAAGGTTATTTTGAATCTTAATTGCACTTTTC TGCTTTAATTAATTAGATTTTTAGTTCAATTGTTATTCTAGTTTAATTAAATGATTTTTCAATTTTGAAAAAAGGAATTT GTTAACGTTTGTTAGTGTTTTTTAATGTCAAGGACTAAAGTGACGGACGTTTGCCACTTTGGGGGACCACGAGCAGAATA AAATTCATTCAGGGACGAATGTGAAGTCGGTTGACACTTTCAAGGACCAAACTGACCATTTACCCTTTTGTTCTTAAGCA TCTCAGTCTCAGGCACATTATATATACTTTATTCTTTAATAAATATTTCTTTTGGTAAGTCATTTAAAATGGTTAAGTGT CCATATATATTTTGTCTTTTTTTCTACTTCTTCTTTTCCAGCTTCCTTACCAATATTATGTGTTTATGGCTTTGAGTCCT CTATAATTGTGTATAGGTTTTTTGGTTTACTAATTGTGTATAGGTTGCAACAAGTCTAACAATTTATTCTTCAACATTCT TACTGAGGTTATACAAATGAAGTACATGATATGGATGTAAAAAAAAAATTTCTCATCTTAAATCATGGC
CDS sequence (LotjaGi1g1v0793700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCAACAACCACCACCGTGCCCCGACGATAATGTGACCGCCTCAGCCGCTGTGAGAGGCGGCACGCGCCACCCGGT GTACCGCGGAGTACGGAAACGGCGGTGGGGCAGGTGGGTGTCAGAAATTAGGGAGCCACGGAAGAAATCGAGGATATGGT TGGGGTCGTTCCCGGTGCCGGAGATGGCGGCGAAGGCATACGACGTTGCCGCGTACTGCCTCAAAGGGCGGAAGGCGCAG CTCAACTTTCCCGACGAGGTGGACCGACTGCCGGTTCCGGCTACCTGCACGGCCAGAGACATTCAGGCGGCTGCGGCTAA GGCGGCGAGCATGATGTCGAAAGCCGCCGGTGAGAAAAGCAGCATTGCGACCGACGGAGACATCGGAGGCGGCGATGATT TCTGGGGTGAGATTGAGTTGCCGGAGCTAATGTGTTGCTGGAGTTCTCCGAGCGGGTCATCGTGGAATTCCTCCGGTGAC ACCACGGCGTGGCCGGAGGTTGAGCTTTTGCCGCTGCAACCCTTCATGGCGTGTCTATAA
Protein sequence (LotjaGi1g1v0793700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQQPPPCPDDNVTASAAVRGGTRHPVYRGVRKRRWGRWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQ LNFPDEVDRLPVPATCTARDIQAAAAKAASMMSKAAGEKSSIATDGDIGGGDDFWGEIELPELMCCWSSPSGSSWNSSGD TTAWPEVELLPLQPFMACL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 17 | 118 | 102 | 2.8E-60 | – | |
| PANTHER | 17 | 118 | 102 | 2.8E-60 | – | |
| Pfam | 26 | 76 | 51 | 1.9E-12 | ||
| ProSiteProfiles | 27 | 84 | 58 | 23.63 | ||
| SMART | 27 | 90 | 64 | 4.7E-34 | ||
| SUPERFAMILY | 27 | 86 | 60 | 4.38E-21 | ||
| Gene3D | 27 | 87 | 61 | 2.9E-28 | ||
| PRINTS | 28 | 39 | 12 | 1.9E-12 | ||
| CDD | 28 | 85 | 58 | 4.10084E-31 | ||
| PRINTS | 66 | 86 | 21 | 1.9E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0793700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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