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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0795200 |
| Transcript ID | LotjaGi1g1v0795200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | plant/protein; TAIR: AT3G61870.1 plant/protein; Swiss-Prot: sp|Q96VC7|ACS2_ZYGBA Acetyl-coenzyme A synthetase 2; TrEMBL-Plants: tr|I3S4M3|I3S4M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0795200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136614975..136618290) extracted from Lotus japonicus Gifu genome v1.2.
ATATGAGGTCCAAGTTCGTTCCTTATCTTTTAGCAAGTAGGATCTTGAACCTCAACCCCTGCTTTGCTATTGCGCTCTCA ATTTCTTTCTTGTCCCTCACCCTGCTGCTGAGTGTTGCTGTCTCTCTCTGAACTATGGCAGCCACGCTCAGTCTCTTAAA GCTTCCAATTCTTCCTAACAAGCCACGCCAATCAACCTCAAAGCTTGTTCCTATTCCTTATATTTCTGCAAAACTAGACA CCCCTAAAGATTTCCCCAACCCACAAAAGCTCTTGGATCAAAATGCCAATGCTCTTCTCAAACATGCATCTCTTTCCCTC ACAGCAGCCACATTTCCATTCTTATTAGAACCCAAGGATGCACTTGCTGTTGGTGGAGAGTTTGGGATATTGGAGGGAAG AACATTTGCTCTTATACACCCCATTGTGCTTGGTGGTTTGTTCTTCTATACATTATATGCAGGTTATTTGGGGTGGCAAT GGAGGCGAGTAAGGACTACCCAGAACGAGATTAATGAGCTCAAGAAACAAATCAAACCTGCCCCGGTCACCCCAGATGGC AAACCTGTGGAAACAGCACCATCACCGGTAGAACTCAAAATACAACAACTTACTGAGGTAGGAAGCGCTTGTGCCAAATT ATCTGCATTTGCAATGAGACATTAAGAGCTTTTTTGTTTTTGCCAATTATCTATGTATTTGTTTGGATCAGCGTTTGTCA AATTGATTTGATATAATATATTATAGTAAAAATTAGTTGAAAATGAAGTGAACATGTTTGGATACATTTATGAAAACGTG ATTTTTGTCGGGCAATCTTATGAAATGCTATGTAACATCTCATAATTTATTATATGCAACGCAGAAGCTATTCTCTCTAA CTTCTGCTAGAATTGATCTTGTGTATGAAATGAATTCTCCAAAATGACTCTCAAATATCAATATTTTCATTTAGAGTTGA TTTTACTTTACCAGACTGATTATGAGGTTTCCCAATGGGAAACCCCCTCTACATAATCACCTAAAAGTTATTCTGGTAAA TGAGATTTGATTCTAAACCTCTCAAACATGGAACCAAACATACAATGAATTTATCATTAGATGAGCACTTCAACGTGTGA TTTTTTTTTTCTAATCCTAATTCAAGCATTCTAAAATGATGTTGTACTGGATGCTGGATTGTATTTTATTATTGTGAACA ATAAAATTCATAGGCTAGTCATGAAATGCTGCATTCTGAATTCTGAATTCTGAATCTGATGAGCACCTAATTTATTAGCT ACCCATATTCAGGAGAGGAAAGAGCTGATCAAAGGTTCATATAGAGAGAAACACTTCAATGCAGGATCCATACTTCTAGG ATTTGGAGTGTTTGAGGCGGTTGGTGGAGGACTGAACACATGGCTTAGGACAGGAAAGTTATTTCCTGGTCCACATTTAT TTGCAGGGGCAGGTAAAGATTAAAATTTTCATTTCATGAAAAAAATATTCATTTTTAAGAACTTAGGAATGTTTGTAGCT TTCAAATGGGTAGAATAACAATGGAGATACTTAGGTAGCTTTGCTGATTGTATAAAATTGACAACTTGTGTATAATCTTT GCCATCCAGGTATTACAGTCCTATGGGCACTGGCTGCTGCCCTAGTACCACCAATGCAGAAAGGAAGTGAAACAGCCAGA AATCTTCACATTGCGCTGAATACATTAAATGTTCTGCTCTTTATTTGGCAGATTCCCACTGGACTTGAAATTGTACTCAA AGTTTTTGAGTTCACCAAATGGCCCTGAATGTAATTAGATTCTCATTGGTAAGTAACTTCCCTGGTATAATTTACTTACA GTTTAGCTTTCTCACAACATCAAATAATGCAACAAAATTGTATCTCCCATTTTCTTTGGCCTTGTACCATAATTGTGTGC ACTGTGCAGTCAAGTGTTGAATAACTGCATTACTTCATTTTTTGATATAAGTTAGCATGTAAGAAGTTCTTACAGTGATT ATATCAACTCCCCTGTTTTGAGTGAAGTTTTGTGTGATAAATTTGGAATTCAGAATCTGATTTGGTCTATAAATTCTAAC TCTTCAAAATTTTAGCAAAGTCCATTTTATAAAAGGGTTCTCTTAAAAATGATCATTTTAGCCGGGTAAATCGAAACTTG TGCATTGCATACAGCCTAGAATATGTCCAGTCATATTACAGTCGTCCACAAGCATCATGATTCAATCTAACCAAACGTAT GCATGCCATGGATCATTTTCAATACTTCATTCCAGGGCATAACCTCACAAATCAAAACCGTATTAAGTATTCATTTGGAT GCTACCAAAGAGCACATATAGAAGCCTATTTAGTACATTTTCTAGTAGATAAGCTCCAATAGGCTCGTATCTAAACGAGC TCTCCATAAGAAAACAGTAAAACATTGACAATGTCCACAGACCATAGCAAAGTTAGTTTAAACAGAAGCAGTTAGCATTC TTCTGTTTTCAGAAAGTTAGTTGTTGGTTAGCTTTCTGTTACATACATGGTTAGACAGTTATCGTTAGCATAGCATCAGT GAGCAAATGCTATTATGCTATATAAACACAAATGTACTGAATGAAAGTTAATCAATCAATACAATACACATTTTGCACAA AAAAAAACATTATTTCCTGAATTTTAAAACTGCAAATGCGTAGAAGTATATATTCAAGCACAGGATGTGAATAAATTCTT GGTTCATCGGTCCCTATTAAAAAAATATAAAGCGCCACCACTCAACGGTGACTTTCATGAGTTTCAAGAATATAATATTT GGCTAGCACTTTACCAGAACAAATGAAAGCCGTGTTTTTATCGTTGAACATGAAGATGGGACCTCCCAACATGATTTGAA CGTCTTCTGTTGAAATATTTCATATGGTGGAAATTAAGAATAATTGTAGGCAATTGATTTGATTCTAAATGAAGAAGAGA AGCACCAAATGTTGAACCCTCTGTTCCGTACATGTAGTCACCAATAGAAAAAGCCAATCACAAAATCATCAAAAAATGTT TAGTCAGACGCTAATCCATGTTTGGATCAACAAAATATATTGAATTCCTGAAACCAAACAATCTAAGGTGTGTGTTTGGA TCAATGGAGTTAATGTCATAATGTGAGTTGGAACCGGGGTGATTTATGTTTGGATAAGTTTATGAAAAGAGTATTTGTTA TGGGATAATGTTGTTAAATACAGTTAAGAAATCACACAATTGATTATGTTAAGTTATCTTTCTGTAGCTTCTTCGGTAAC TTCTCCGCAGAATTAATTTTGAGACTTAATTTATTT
CDS sequence (LotjaGi1g1v0795200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCCACGCTCAGTCTCTTAAAGCTTCCAATTCTTCCTAACAAGCCACGCCAATCAACCTCAAAGCTTGTTCCTAT TCCTTATATTTCTGCAAAACTAGACACCCCTAAAGATTTCCCCAACCCACAAAAGCTCTTGGATCAAAATGCCAATGCTC TTCTCAAACATGCATCTCTTTCCCTCACAGCAGCCACATTTCCATTCTTATTAGAACCCAAGGATGCACTTGCTGTTGGT GGAGAGTTTGGGATATTGGAGGGAAGAACATTTGCTCTTATACACCCCATTGTGCTTGGTGGTTTGTTCTTCTATACATT ATATGCAGGTTATTTGGGGTGGCAATGGAGGCGAGTAAGGACTACCCAGAACGAGATTAATGAGCTCAAGAAACAAATCA AACCTGCCCCGGTCACCCCAGATGGCAAACCTGTGGAAACAGCACCATCACCGGTAGAACTCAAAATACAACAACTTACT GAGGAGAGGAAAGAGCTGATCAAAGGTTCATATAGAGAGAAACACTTCAATGCAGGATCCATACTTCTAGGATTTGGAGT GTTTGAGGCGGTTGGTGGAGGACTGAACACATGGCTTAGGACAGGAAAGTTATTTCCTGGTCCACATTTATTTGCAGGGG CAGGTATTACAGTCCTATGGGCACTGGCTGCTGCCCTAGTACCACCAATGCAGAAAGGAAGTGAAACAGCCAGAAATCTT CACATTGCGCTGAATACATTAAATGTTCTGCTCTTTATTTGGCAGATTCCCACTGGACTTGAAATTGTACTCAAAGTTTT TGAGTTCACCAAATGGCCCTGA
Protein sequence (LotjaGi1g1v0795200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATLSLLKLPILPNKPRQSTSKLVPIPYISAKLDTPKDFPNPQKLLDQNANALLKHASLSLTAATFPFLLEPKDALAVG GEFGILEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTTQNEINELKKQIKPAPVTPDGKPVETAPSPVELKIQQLT EERKELIKGSYREKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNL HIALNTLNVLLFIWQIPTGLEIVLKVFEFTKWP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 1 | 273 | 273 | 2.6E-137 | – | |
| PANTHER | 1 | 273 | 273 | 2.6E-137 | – | |
| Phobius | 53 | 71 | 19 | - | – | |
| Phobius | 72 | 90 | 19 | - | – | |
| Phobius | 91 | 114 | 24 | - | – | |
| Pfam | 92 | 266 | 175 | 2.1E-52 | ||
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 115 | 175 | 61 | - | – | |
| TMHMM | 176 | 198 | 23 | - | – | |
| Phobius | 176 | 198 | 23 | - | – | |
| Phobius | 199 | 209 | 11 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 210 | 227 | 18 | - | – | |
| Phobius | 228 | 238 | 11 | - | – | |
| Phobius | 239 | 257 | 19 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 258 | 273 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0795200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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