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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0796400 |
| Transcript ID | LotjaGi1g1v0796400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF4228 domain protein; TAIR: AT3G61920.1 UvrABC system protein C; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|A0A0L9TEW9|A0A0L9TEW9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0796400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136715491..136716625) extracted from Lotus japonicus Gifu genome v1.2.
CTAGGCTATAATTAGCATTTTGAAATTTTAACTTGACAACAGACGATTGCGTTTTAGACGATCATAAACAAATTAGAAAG ATGATAATTTGCAGAAAAAGGTATCTTACTTTGCTAAAAGTACAAACTAAGTGGGTCCAGTTCACTACAAAACCAATCAA TGATACAAAAAAATTACTCCCAAAGGTTCGAAAAGAATGAAGAAAGGGATTTGATGCTTTATGTGTCGGCCAGTTATTCT TCCCAAACAATCCAACATAAACCAGAAGAAAGCAAGAAACATTCTCACCCTTCAATTCAATCCATTGATCATGGGGAACT GCGTGTTCAAAGGAAGTCATGGCTCTGTTTTGGATGACAACATGGTGAAGGTGGCAACCTCCAACGGAGGGATCATGGAG CTGTGCACACCCATTACCGCAGATTGCATAACCATCGAATTCCCCGGCCACGGAATCTACCGGAGCCGCCGGGACTTGTT CTCGGAGCCTCTCCACCCCAACGAAGAGCTTCATGCTGGTGAGCTCTACCACCTCCTCCCTCTCAACCCTTTTTCCAGGT TGTCATCCAGAAACAGCATGGCCAGACAACTGTCTAACAATTCTTCAGCAACCTTAACACCGTACCGGATGTCTACCTAC GACAACAACAAAAGCAAGATGTGGTCGGAAACAGGGCAACAAGTGTTTCCAATTAGGTGTAACAATAAAAGCACGGGAGT GTGGAAGGTGAAGTTGGTAATATGCCCGGAGCAGCTGTCGGAGATTCTGTCGCAGGAGTCACGGACGGAGGCGCTCATAG AGAGCATCAGGACGGTGGCCAAGTGCGGCAATAGGGTGCCATCGGAGGCCGCCGGTTCCGATCACTGGAGTGTTTCCAGC AGCTGGAATACTAATGGCTCTGTAATTGAGAATATGTAGACTAAATTAATAGCCACGGTTATATTACCATGTGTATCAAT ATGTTTTTAATCATTGTTATAATAATTTCGTTCTCTCCCTCCAGAAATTTTTATAATATGTGCATTTTCTTATCTCCTTT TTTTTCCTTCCTCTGAAATTTTTATTTTCTTATCTGAAATTTTTATTTTCTTATCTCTTTTTTTCCTTCCTAAGGAATTT TTATCCCTAATCCAG
CDS sequence (LotjaGi1g1v0796400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTCGGCCAGTTATTCTTCCCAAACAATCCAACATAAACCAGAAGAAAGCAAGAAACATTCTCACCCTTCAATTCAA TCCATTGATCATGGGGAACTGCGTGTTCAAAGGAAGTCATGGCTCTGTTTTGGATGACAACATGGTGAAGGTGGCAACCT CCAACGGAGGGATCATGGAGCTGTGCACACCCATTACCGCAGATTGCATAACCATCGAATTCCCCGGCCACGGAATCTAC CGGAGCCGCCGGGACTTGTTCTCGGAGCCTCTCCACCCCAACGAAGAGCTTCATGCTGGTGAGCTCTACCACCTCCTCCC TCTCAACCCTTTTTCCAGGTTGTCATCCAGAAACAGCATGGCCAGACAACTGTCTAACAATTCTTCAGCAACCTTAACAC CGTACCGGATGTCTACCTACGACAACAACAAAAGCAAGATGTGGTCGGAAACAGGGCAACAAGTGTTTCCAATTAGGTGT AACAATAAAAGCACGGGAGTGTGGAAGGTGAAGTTGGTAATATGCCCGGAGCAGCTGTCGGAGATTCTGTCGCAGGAGTC ACGGACGGAGGCGCTCATAGAGAGCATCAGGACGGTGGCCAAGTGCGGCAATAGGGTGCCATCGGAGGCCGCCGGTTCCG ATCACTGGAGTGTTTCCAGCAGCTGGAATACTAATGGCTCTGTAATTGAGAATATGTAG
Protein sequence (LotjaGi1g1v0796400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCRPVILPKQSNINQKKARNILTLQFNPLIMGNCVFKGSHGSVLDDNMVKVATSNGGIMELCTPITADCITIEFPGHGIY RSRRDLFSEPLHPNEELHAGELYHLLPLNPFSRLSSRNSMARQLSNNSSATLTPYRMSTYDNNKSKMWSETGQQVFPIRC NNKSTGVWKVKLVICPEQLSEILSQESRTEALIESIRTVAKCGNRVPSEAAGSDHWSVSSSWNTNGSVIENM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 227 | 197 | 1.2E-82 | – | |
| PANTHER | 31 | 227 | 197 | 1.2E-82 | – | |
| Pfam | 31 | 204 | 174 | 5.5E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0796400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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