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Domain of unknown function (DUF4228)
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Plastid movement impaired 2 [Theobroma cacao] gi|508712106|gb|EOY04003.1| | 5 | ||
| – | Plastid movement impaired 2 [Theobroma cacao] gi|508712106|gb|EOY04003.1| | 5 | ||
| – | Plastid movement impaired 2 [Theobroma cacao] gi|508712106|gb|EOY04003.1| | 6 | ||
| – | 6,7-dimethyl-8-ribityllumazine synthase [Theobroma cacao] gi|508787371|gb|EOY34627.1| | 5 | ||
| – | PREDICTED: probable phosphatidylinositol 4-phosphate 5-kinase MSS4-like [Cicer arietinum] gi|502078284|ref|XP_004485896.1| | 5 | ||
| – | Uncharacterized protein TCM_040942 [Theobroma cacao] gi|508785660|gb|EOY32916.1| | 4 | ||
| – | Serine/threonine-protein kinase TAO3 [Theobroma cacao] gi|508708472|gb|EOY00369.1| | 9 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508773368|gb|EOY20624.1| | 5 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508773368|gb|EOY20624.1| | 4 | ||
| – | Uncharacterized protein TCM_022601 [Theobroma cacao] gi|508716358|gb|EOY08255.1| | 4 | ||
| – | Uncharacterized protein TCM_004789 [Theobroma cacao] gi|508703343|gb|EOX95239.1| | 4 | ||
| – | Multidrug resistance protein ABC transporter family protein [Medicago truncatula] gi|357442283|ref|XP_003591419.1| | 4 | ||
| – | Uncharacterized protein TCM_002943 [Theobroma cacao] gi|508702040|gb|EOX93936.1| | 5 | ||
| – | UvrABC system protein C [Theobroma cacao] gi|508703701|gb|EOX95597.1| | 4 | ||
| – | Uncharacterized protein TCM_012897 [Theobroma cacao] gi|508774112|gb|EOY21368.1| | 4 | ||
| – | Uncharacterized protein TCM_019323 [Theobroma cacao] gi|508712164|gb|EOY04061.1| | 4 | ||
| – | Serine/threonine-protein kinase TAO3 [Theobroma cacao] gi|508708472|gb|EOY00369.1| | 5 | ||
| – | PREDICTED: LOW QUALITY PROTEIN: pathogenesis-related protein PRB1-3-like [Cicer arietinum] gi|502161032|ref|XP_004511992.1| | 4 | ||
| – | HTH-type transcriptional regulator protein ptxE [Theobroma cacao] gi|508699351|gb|EOX91247.1| | 5 | ||
| – | UvrABC system protein C [Theobroma cacao] gi|508703701|gb|EOX95597.1| | 4 | ||
| – | UvrABC system protein C [Theobroma cacao] gi|508703701|gb|EOX95597.1| | 4 | ||
| – | Uncharacterized protein TCM_006313 [Theobroma cacao] gi|508705327|gb|EOX97223.1| | 4 | ||
| – | Uncharacterized protein TCM_006313 [Theobroma cacao] gi|508705327|gb|EOX97223.1| | 4 | ||
| – | Uncharacterized protein TCM_006313 [Theobroma cacao] gi|508705327|gb|EOX97223.1| | 2 | ||
| – | Uncharacterized protein TCM_000814 [Theobroma cacao] gi|508699822|gb|EOX91718.1| | 4 | ||
| – | Uncharacterized protein TCM_000814 [Theobroma cacao] gi|508699822|gb|EOX91718.1| | 5 | ||
| – | HTH-type transcriptional regulator protein ptxE [Theobroma cacao] gi|508699351|gb|EOX91247.1| | 5 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508773368|gb|EOY20624.1| | 5 | ||
| – | Uncharacterized protein TCM_039416 [Theobroma cacao] gi|508784752|gb|EOY32008.1| | 4 | ||
| – | PREDICTED: probable phosphatidylinositol 4-phosphate 5-kinase MSS4-like [Cicer arietinum] gi|502078284|ref|XP_004485896.1| | 10 | ||
| – | Multidrug resistance protein ABC transporter family protein [Medicago truncatula] gi|357442283|ref|XP_003591419.1| | 5 | ||
| – | Uncharacterized protein TCM_015620 [Theobroma cacao] gi|508776610|gb|EOY23866.1| | 4 | ||
| – | Uncharacterized protein TCM_010809 [Theobroma cacao] gi|508708993|gb|EOY00890.1| | 5 | ||
| – | Uncharacterized protein TCM_040942 [Theobroma cacao] gi|508785660|gb|EOY32916.1| | 4 | ||
| – | Uncharacterized protein TCM_039416 [Theobroma cacao] gi|508784752|gb|EOY32008.1| | 4 | ||
| – | Uncharacterized protein TCM_015620 [Theobroma cacao] gi|508776610|gb|EOY23866.1| | 4 | ||
| – | DUF4228 domain protein; TAIR: AT5G12340.1 DUF4228 domain protein; Swiss-Prot: sp|P06417|VL1_HPV08 Major capsid protein L1; TrEMBL-Plants: tr|I1M743|I1M743_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049600 | 4 | ||
| – | Plastid movement impaired protein; TAIR: AT1G66480.1 plastid movement impaired 2; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I1M862|I1M862_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0091800 | 5 | ||
| – | Plastid movement impaired protein; TAIR: AT1G66480.1 plastid movement impaired 2; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I1M862|I1M862_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0091800 | 5 | ||
| – | Electron transporter, putative (Protein of unknown function, DUF547); TAIR: AT1G06980.1 6,7-dimethyl-8-ribityllumazine synthase; Swiss-Prot: sp|P52126|YFJK_ECOLI Uncharacterized protein YfjK; TrEMBL-Plants: tr|M5WKE6|M5WKE6_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0112000 | 11 | ||
| – | Nuclear poly(a) polymerase; TAIR: AT5G50090.1 D-ribose-binding periplasmic protein; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|I3SFD8|I3SFD8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0183500 | 5 | ||
| – | TSA: Wollemia nobilis Ref_Wollemi_Transcript_28859_610 transcribed RNA sequence; TAIR: AT3G10120.1 hypothetical protein; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I3T4T7|I3T4T7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0675600 | 4 | ||
| – | DUF4228 domain protein; TAIR: AT3G03280.1 hypothetical protein; Swiss-Prot: sp|Q8TZ33|THIC_METKA Phosphomethylpyrimidine synthase; TrEMBL-Plants: tr|A0A0L9U9Z7|A0A0L9U9Z7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0760500 | 4 | ||
| – | Multidrug resistance protein ABC transporter family protein; TAIR: AT4G02090.1 multidrug resistance protein ABC transporter family protein; Swiss-Prot: sp|Q2JSX7|PSBU_SYNJA Photosystem II 12 kDa extrinsic protein; TrEMBL-Plants: tr|I3SI31|I3SI31_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0760600 | 4 | ||
| – | DUF4228 domain protein; TAIR: AT3G61920.1 UvrABC system protein C; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|A0A0L9TEW9|A0A0L9TEW9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0796400 | 4 | ||
| – | Plastid movement impaired protein; TAIR: AT2G01340.1 plastid movement impaired protein; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I1ND67|I1ND67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0061700 | 5 | ||
| – | DUF4228 domain protein; TAIR: AT1G64700.1 DUF4228 domain protein; Swiss-Prot: sp|A3DLD9|SAT_STAMF Sulfate adenylyltransferase; TrEMBL-Plants: tr|I1MPG9|I1MPG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0126400 | 4 | ||
| – | ATP-dependent Clp protease proteolytic subunit; TAIR: AT3G03280.1 hypothetical protein; Swiss-Prot: sp|A4WDU5|MUTS_ENT38 DNA mismatch repair protein MutS; TrEMBL-Plants: tr|M1D0F5|M1D0F5_SOLTU Uncharacterized protein; Found in the gene: LotjaGi2g1v0237900 | 4 | ||
| – | D-ribose-binding periplasmic; TAIR: AT1G60010.1 D-ribose-binding periplasmic protein; Swiss-Prot: sp|Q7NWP4|SYE_CHRVO Glutamate--tRNA ligase; TrEMBL-Plants: tr|I3SLD7|I3SLD7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0315300 | 5 | ||
| – | DUF4228 domain protein; TAIR: AT3G50800.1 hypothetical protein; Swiss-Prot: sp|P14242|PMS1_YEAST DNA mismatch repair protein PMS1; TrEMBL-Plants: tr|A0A0L9UR78|A0A0L9UR78_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0396200 | 5 | ||
| – | HTH-type transcriptional regulator; TAIR: AT4G37240.1 HTH-type transcriptional regulator; Swiss-Prot: sp|A2ST18|Y1307_METLZ UPF0179 protein Mlab_1307; TrEMBL-Plants: tr|V7CIX4|V7CIX4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0396300 | 5 | ||
| – | TSA: Wollemia nobilis Ref_Wollemi_Transcript_13344_1216 transcribed RNA sequence; TAIR: AT3G61920.1 UvrABC system protein C; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I3S7W7|I3S7W7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0403100 | 4 | ||
| – | DUF4228 domain protein; TAIR: AT5G66580.1 hypothetical protein; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I3T7L8|I3T7L8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0504300 | 4 | ||
| – | Plastid movement impaired protein; TAIR: AT2G01340.1 plastid movement impaired protein; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I1ND67|I1ND67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0079600 | 6 | ||
| – | D-ribose-binding periplasmic; TAIR: AT5G67620.1 DUF4228 domain protein; Swiss-Prot: sp|A3CYJ5|PEPQ_SHEB5 Xaa-Pro dipeptidase; TrEMBL-Plants: tr|I3SWU7|I3SWU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0093900 | 5 | ||
| – | DUF4228 domain protein; TAIR: AT2G23690.1 HTH-type transcriptional regulator; Swiss-Prot: sp|Q7N3N2|PROQ_PHOLL RNA chaperone ProQ; TrEMBL-Plants: tr|B7FK24|B7FK24_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0113200 | 5 | ||
| – | D-ribose-binding periplasmic; TAIR: AT1G60010.1 D-ribose-binding periplasmic protein; Swiss-Prot: sp|A3CPQ6|SCPB_STRSV Segregation and condensation protein B; TrEMBL-Plants: tr|A0A151TGR6|A0A151TGR6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0162100 | 4 | ||
| – | D-ribose-binding periplasmic protein; TAIR: AT5G50090.1 D-ribose-binding periplasmic protein; Swiss-Prot: sp|O75333|TBX10_HUMAN T-box transcription factor TBX10; TrEMBL-Plants: tr|C6T021|C6T021_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0238300 | 5 | ||
| – | DUF4228 domain protein; TAIR: AT1G21010.1 poly polymerase; Swiss-Prot: sp|Q892X1|PUR5_CLOTE Phosphoribosylformylglycinamidine cyclo-ligase; TrEMBL-Plants: tr|G7JUB6|G7JUB6_MEDTR DUF4228 domain protein; Found in the gene: LotjaGi4g1v0305000 | 4 | ||
| – | 6,7-dimethyl-8-ribityllumazine synthase; TAIR: AT1G29195.1 phosphatidylinositol 4-phosphate 5-kinase MSS4-like protein; Swiss-Prot: sp|Q9M394|SCKL1_ARATH Fructokinase-like 1, chloroplastic; TrEMBL-Plants: tr|A0A0L9TJW9|A0A0L9TJW9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0378100 | 10 | ||
| – | TSA: Wollemia nobilis Ref_Wollemi_Transcript_1629_832 transcribed RNA sequence; TAIR: AT3G61920.1 UvrABC system protein C; Swiss-Prot: sp|Q2YBI1|FPG_NITMU Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|I3S125|I3S125_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0436900 | 4 | ||
| – | DUF4228 domain protein; TAIR: AT1G18290.1 DUF4228 domain protein; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|A0A0L9ULE0|A0A0L9ULE0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0464900 | 4 | ||
| – | Multidrug resistance protein ABC transporter family protein; TAIR: AT4G02090.1 multidrug resistance protein ABC transporter family protein; Swiss-Prot: sp|D3ZZ80|OBSL1_RAT Obscurin-like protein 1; TrEMBL-Plants: tr|G7IDR9|G7IDR9_MEDTR Multidrug resistance protein ABC transporter family protein; Found in the gene: LotjaGi5g1v0245900 | 5 | ||
| – | DUF4228 domain protein; TAIR: AT3G03280.1 hypothetical protein; Swiss-Prot: sp|O80736|JAL17_ARATH Jacalin-related lectin 17; TrEMBL-Plants: tr|A0A0L9TFI7|A0A0L9TFI7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0332100 | 5 | ||
| – | Plastid movement impaired protein; TAIR: AT1G66480.1 plastid movement impaired 2; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|A0A0S3RZS9|A0A0S3RZS9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0060600 | 5 | ||
| – | 6,7-dimethyl-8-ribityllumazine synthase; TAIR: AT1G06980.1 6,7-dimethyl-8-ribityllumazine synthase; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I3SGH7|I3SGH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0110300 | 6 | ||
| – | DUF4228 domain protein; TAIR: AT5G12340.1 DUF4228 domain protein; Swiss-Prot: sp|P71037|YWNB_BACSU Uncharacterized protein YwnB; TrEMBL-Plants: tr|I1JIY1|I1JIY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0180900 | 4 | ||
| – | Fatty acid oxidation complex subunit alpha; TAIR: AT5G66580.1 hypothetical protein; Swiss-Prot: sp|Q07ZP8|FADJ_SHEFN Fatty acid oxidation complex subunit alpha; TrEMBL-Plants: tr|I3SD12|I3SD12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0236600 | 4 | ||
| – | 6,7-dimethyl-8-ribityllumazine synthase; TAIR: AT1G29195.1 phosphatidylinositol 4-phosphate 5-kinase MSS4-like protein; Swiss-Prot: sp|Q9LV81|BRTL3_ARATH Probable mitochondrial adenine nucleotide transporter BTL3; TrEMBL-Plants: tr|V7BSL9|V7BSL9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0322700 | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 1.45 |