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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0798100 |
| Transcript ID | LotjaGi1g1v0798100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT2G46870.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|O82799|NGA1_ARATH B3 domain-containing transcription factor NGA1; TrEMBL-Plants: tr|A0A1J7GPC2|A0A1J7GPC2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136858953..136861487) extracted from Lotus japonicus Gifu genome v1.2.
AGCTATCTACCTTTCTTTCTCTCTCTCTCTCACTGAGTCACTGGCGAGTGAGTGAGGTTGGAACAATGCTTTTGCTTCTT TTCTTTCCTACTTGCAAAGAACCTTCCTTCCTCTGTGTTTGTGTGAGGTTAACTATAGTTTAGTTGTTGATAGCTAAAAC CCACATCATATATATGATCACTTTCCCTCTCACTCTCTCTCATTTATGTTATGATGTGCAGGTCAACAAAATATATAACA ACAACAACTTGAGTGACTCTACTCCGTCCATGTCCATGGAATATAATGGATTGTAGTGTTTTTTGTTTAGGGTTTGGAGG TCAAATCAATATATGAAGCCACCGACGAGACGAGTGTTTTAATTTGCCTACTAGTGGTGTACTAAAACACCCTCACCCTC AGCTACCAATCTGGCCGGGTATAATATCTTCCCTACCTCTCTCTCTCAAGTCTCATGCTATATATTTTGTTCCTCGGCCA AGGTTTTCTTTTGTTTGACCTCATCATCTTCTTAACTTTCAATTCAATTCGGACCCACTTTTTCTCAGACTTTTCCATTT CTTGTCAATTTTGGTTTTTTTTTTTTCTTGTTTGCTTTCCTTAATTCCCTCTTCTTCTCTTCCCTTACTTTATTCTTTTC TATTCATTTCATCAAAATTATTTTATTCCTTAATTCATTTTTTGGCAGTAGTACTGTTTCCCTTAGATCCAGAGGCCGGT GAATTGAAGGCAGGTCAGGTGAGTGATAATTTGATGGAGTTGATGGAAGAGGTTAAAGGGCATTCTGATAGCAGGGAAGA AGGGGAGGAATTAGAGGAAACAGCAACACCAGAGATCATCACAATCACAGGTGAAGAAAGCAGCAGTATCAATTTCCTAA TTATACATTAATAATATTCACAACAACATATACTCTTTAATTATCATCACCTTAAAGTATCAATTTATTCATCCATGTCA TGATGATGATCATTAATATTGTCCAGATGCCACTTACAATTCATCATCTGGATTAGGGTTACACCAGCAACAAGATGCTG CAGCAGCAGTTTCTAATTTCACCAATCGCAGGAATCAGCAACTAGACTTGATGGACTTGACACTTGGAAGCCACAACCAC ACGGAATTAGAGGAACATGGATCAGGATCAGGATCAAGAGAAAGAGATCAGGTGGTGGTGGAGAAGGAGCACATGTTTGA CAAAGTGGTGACGCCAAGCGATGTGGGGAAGCTGAACAGGCTGGTGATCCCAAAGCAGCATGCGGAGAAGTACTTTCCTC TGGACTCCTCATCCAACGAGAAAGGCCTTCTCCTCAATTTCGAGGACCGCAACGGGAAGCTGTGGCGTTTCAGGTACTCT TACTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTCGTCAAGGATAAGAAGCTTGATGCAGGTGA CATTGTCTCCTTCCAACGAGGACTCGGTGATCTTTACAGACACAGGTTGTACATTGATTGGAGGAGAAGAACTCATCATC CTCATCATGATCCTAATTCAAATTCACTCATCACACCTTTCTTCCTTCCCAATCACTACTCTATCAGATGGGGCTCTTCT TCTTCTGCTGCTTCTGCTGCTGGCGCCAGATTCTACTCCCTACCTTCTCCTATACCTCCATCCTCTACAACTACCATGCC CTTGCCTCGCTTATACAATGATCATTTTCACCAACAAAATTACAACATGTATAATTTTCATCAGCAGTACCATCATGGCG AGCTGAATTCGCCAGGATCTGGGTCAGTCTATTATCTGAGCTCTCCTCCAGCAGTACCATCAATGAGGGATCAACAAGAG ATCAGAGGGAGCATTAATGTCCCCATGATCATTGATTCTGTACCAGTTTCTCATCATCATCACCACCACCACCACCACCA GCATGGGGGCAACATGAGTGCTTCTTCTGCTGTTGCTGGTGGTGCTAATAGTACTGCTGGGAAACGCCTAAGGCTATTTG GTGTGAACATGGAATGTGCTTCTTCTTCTTCTTCGGCGGCAGATCAAGAACATGTCAGCAGTACAATGCCCCTTCTTCAG CGCCGTGAAGATCCACTTTCATTATCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGGAATGTTTGATTTGGATCCCTC TTTGCAGTATCGCCAGTGAATCACCCATTAAATAAATTCATGGAGAAGATTTAGTTTCAAAGTTAGTTGGGATATCAAGC CAAACTCTCTTCTGCAATTTTTGTTTTTCCTTTCTTTCATCAGCTAGCTATGAAGGAAAAAGAGCTTTAGCTGCCAAACT TTCTTTGCTAATCTTCTTCTTTTGATCAGTAATTTTAGTCTCTAGCATTTGAGCATCCTAGTAGTACGTTTATTAGCTGG GGATTCGAGTCCTGAGAAATCATTTCTCATGAAATATTCCATTAGGCTGGCTTTTCAAATGTGTATAAAACTACAAATAT ATATATATATATATATATATTTATCGCAATATAATATATATGGCTTTTTATTGCA
CDS sequence (LotjaGi1g1v0798100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTGATGGAAGAGGTTAAAGGGCATTCTGATAGCAGGGAAGAAGGGGAGGAATTAGAGGAAACAGCAACACCAGA GATCATCACAATCACAGATGCCACTTACAATTCATCATCTGGATTAGGGTTACACCAGCAACAAGATGCTGCAGCAGCAG TTTCTAATTTCACCAATCGCAGGAATCAGCAACTAGACTTGATGGACTTGACACTTGGAAGCCACAACCACACGGAATTA GAGGAACATGGATCAGGATCAGGATCAAGAGAAAGAGATCAGGTGGTGGTGGAGAAGGAGCACATGTTTGACAAAGTGGT GACGCCAAGCGATGTGGGGAAGCTGAACAGGCTGGTGATCCCAAAGCAGCATGCGGAGAAGTACTTTCCTCTGGACTCCT CATCCAACGAGAAAGGCCTTCTCCTCAATTTCGAGGACCGCAACGGGAAGCTGTGGCGTTTCAGGTACTCTTACTGGAAC AGCAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTCGTCAAGGATAAGAAGCTTGATGCAGGTGACATTGTCTC CTTCCAACGAGGACTCGGTGATCTTTACAGACACAGGTTGTACATTGATTGGAGGAGAAGAACTCATCATCCTCATCATG ATCCTAATTCAAATTCACTCATCACACCTTTCTTCCTTCCCAATCACTACTCTATCAGATGGGGCTCTTCTTCTTCTGCT GCTTCTGCTGCTGGCGCCAGATTCTACTCCCTACCTTCTCCTATACCTCCATCCTCTACAACTACCATGCCCTTGCCTCG CTTATACAATGATCATTTTCACCAACAAAATTACAACATGTATAATTTTCATCAGCAGTACCATCATGGCGAGCTGAATT CGCCAGGATCTGGGTCAGTCTATTATCTGAGCTCTCCTCCAGCAGTACCATCAATGAGGGATCAACAAGAGATCAGAGGG AGCATTAATGTCCCCATGATCATTGATTCTGTACCAGTTTCTCATCATCATCACCACCACCACCACCACCAGCATGGGGG CAACATGAGTGCTTCTTCTGCTGTTGCTGGTGGTGCTAATAGTACTGCTGGGAAACGCCTAAGGCTATTTGGTGTGAACA TGGAATGTGCTTCTTCTTCTTCTTCGGCGGCAGATCAAGAACATGTCAGCAGTACAATGCCCCTTCTTCAGCGCCGTGAA GATCCACTTTCATTATCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGGAATGTTTGATTTGGATCCCTCTTTGCAGTA TCGCCAGTGA
Protein sequence (LotjaGi1g1v0798100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELMEEVKGHSDSREEGEELEETATPEIITITDATYNSSSGLGLHQQQDAAAAVSNFTNRRNQQLDLMDLTLGSHNHTEL EEHGSGSGSRERDQVVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWN SSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGLGDLYRHRLYIDWRRRTHHPHHDPNSNSLITPFFLPNHYSIRWGSSSSA ASAAGARFYSLPSPIPPSSTTTMPLPRLYNDHFHQQNYNMYNFHQQYHHGELNSPGSGSVYYLSSPPAVPSMRDQQEIRG SINVPMIIDSVPVSHHHHHHHHHQHGGNMSASSAVAGGANSTAGKRLRLFGVNMECASSSSSAADQEHVSSTMPLLQRRE DPLSLSSSARFGDQRGGMFDLDPSLQYRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 73 | 392 | 320 | 1.9E-99 | – | |
| PANTHER | 73 | 392 | 320 | 1.9E-99 | – | |
| Gene3D | 93 | 217 | 125 | 1.3E-46 | ||
| SUPERFAMILY | 100 | 191 | 92 | 1.19E-29 | ||
| CDD | 101 | 190 | 90 | 7.65282E-27 | ||
| SMART | 103 | 208 | 106 | 3.7E-23 | ||
| ProSiteProfiles | 103 | 208 | 106 | 14.269 | ||
| Pfam | 103 | 207 | 105 | 6.2E-29 | ||
| MobiDBLite | 333 | 360 | 28 | - | – | |
| MobiDBLite | 380 | 429 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0798100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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