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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0799100 |
| Transcript ID | LotjaGi1g1v0799100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | muscle M-line assembly protein; TAIR: AT1G53800.1 muscle M-line assembly protein; Swiss-Prot: sp|Q83I37|GPDA_TROW8 Glycerol-3-phosphate dehydrogenase [NAD](P)+]; TrEMBL-Plants: tr|I1JS71|I1JS71_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0799100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136953462..136958522) extracted from Lotus japonicus Gifu genome v1.2.
CGACGTTATCCAAATTCGCTTGGTTGGTTATTCTTCCTCTCTCTTTGTCTCTGCTACTGAAATGCTCTTTTATCTCTATC TCTCTATCTATCTATCTATCTATCTATCTGGGATTCCTCTAAATTAAACTCGCACTCTCGCGGAATCACCTCTCATGCCT TTGCTTGGTTGGTACCTTCTTCTTCTTCTTCTTCCACTTTTCACTCTCATTTCAATTCTTTGTTTTGTGTTATTGTTATC ATATCCATGCTGCTAGGTCTGGTTCTTATCTTGTGTTTTGCGGTCAGCAGAGATGACACTGAGGGCGCCTATGCCTTCTT CATATTACCATGCCGGAAGAGACTCAAGTTGGAAATCCATGGACTTTGACAAGCTTCAAAAGGAGAATTTCAATGTCGGC CGCCTTAACTTGAACAAGTTTCCATTCCTTATTAAGGCAGTTGCTACCTGTGAACCCGACACTTTGCTTCCCAAACACGA CAAATGCGACCTGCTTCCCAATCCTCACTCTTCTCTTGATTTTTCTGACGACGAACCAGAAGTTGCTCTCCAGGACTGCG AAAAGTTGAGAAGAATGAGGATTTCAAAAGCTAATAAAGGCAACATGCCATGGAACAAAGGAAGAAAGCACAGTGCTGGT AATCTTTCCTTTCTACTTCTACTCACTCCTCTCTCTCTCTGTCTTTATTTTTGTTCTAATTTTCAATGTATGAGCAGAAA CTATTCAGAAAATCAAGGAAAGAACAAGGCTAGCAATGCAGAATCCTAAGGTGATGTCATGTAAGCATGCTATTGTCTTT ATTCAACAACATTTTCATATTAACTTCTTCAAAACATGCATTTTATTTTAATTTCAAATCAACATCGCTTACACACTTGT TAGAATTATACAGGCTCAGCTATCACTTTTTGTGCTCAAAGAAACTGCTCTTAATGGGGAAAATATGCAAAGGATTAAAG CTCAAGAGAACACAAGTTTGAAGAAACCATTTATATTCTCTCTTAGTGAATGGCCTGCCATTTTTTATATAACTCCTGCT GAAATCACAAATTTAAATAAAATGCATTGCAAAAATAACTAGTCAACAGCAAGAATTATTTGTAACTATTTTTTCTTACA TCAGCTGCTAGGGGCACAATTTTTTAAGTTCTCAGTAATTTGCAGAGTGAAACTTTTCATATTTTATATTGACCTGGATT GGATAGCCAAATTGAGCTTTTCAAAGCACACTTTATCATCCTCTATTTGTCCCTGCTGTCACTCAACAGTTTCTTAGTAT GTTGTAACTTTATAAGTAGGTATTTTCAATTTGGACTAGTTGTATCATAATCTAGGATTACTTGTAGATGAAGATATGGA ATTGTTATTTGGATTTTTCAACTTTTGCTTATATAGTTATCTTAATTGCTTTCCTTAATGAAATTCGGTAATGCAGGTCA AATTGAAGTTGAAGAATCTCGGGCATGCACAAACGTAAGCATATGCCTTCCTATGATCATTGTTGTTATTGATAAGCATA TGCCTACCCATAGAATTTTACTGAATTCAGCCTTCTTTATTGGTTGCACAGCACAGAAACGAAACAGAAGATTGGTGCTG GAGTGAAGTTGCGATGGGAAAGGAGGCGTGGAATGAAGGTGGTACAGGAGACTTGCTGCTTTGAGTGGCAAAATTTAATT GCAGAAGGTTCAAGGCAAGGCTATGTTGGTCAGGAAGAGCTGCAATGGAATTCCTATGAAATCTTGGATGAACAGTTGAA GCAGGAGTGGTTGGTGAGTATTGATCAAAGGAAACGAATGCCTGGGGCACCAGGCAGCAAAAGAGCGCCCAAGTCCCCTG AACAGAGGAGGAAAATTGCAGAAGCCATTGCTGCAAAATGGGCTGATCCTGTAAGTATATGTGTAATACCTTGAAGTCGT GTGGTTTATGGTTTTTGTGGTAACTAAATGTTTGCACCATCTTGTGCTCAATTGCACACTATTATATTCTCATAAGTCAT AAGACCATAACTTATTAGTTGTGTGTGATTGACTTCAGAGAAGTTAACACTGTATGTGTGTATCAATTTTTGGTGTCACA TCTGTTGATTGAGTTTGTTAAATATAGAGTTTGTTGATTGAATATATTTGATTAGGATAGAGCTTCGTGTGTTATGAAAT ATAAATTTTCTTTAAAAATAGTGATGAAGTTATAGATTAATTAGGAGTTATTAAATTAGTAGTTTGTTTTTCATCTTTAT AAAAAAGGATTATGCTTTGAGTGAGTTACTCTCAAGCAATTCTGTTAATCATTTCTCCATACGCATATGGTACTAGAGCT ATCAGTCTGGCCCGGTTCCTAAAAAACTAAAAACCCTAAAATTCTTTCTAGGATAAATGGAAATATGAAACATTTTCTCA AACCAAACACACCCTAAGATTTCATATGTTGCGAGTCTCTCGTAGTTGATTTCCGTAAGCTATCTTGATTAATTAGAATT TGAGGCTGAATAGTAATATAAGTGTTTTTAGCAGTACAACCTTCCATGTTGACCTGTTTCACAAACTGTCTTCCAATAAA TACTGAATATTGTTAAAAAGTAAGGCCCAGAGTAGGAATGTTTATATAAAAAGTGAATATTGTTAACTACTAAATACTGT TGTTGCCTACGGAAAGTCATTTGTGATTGGCCTGTATTATGAAAAAGTGAATGTTGATATGCATGTCTTTACTCCACCCT TTAAATCAGGAATACCGCGACAGAGTTTGCTCTGCATTGGCCAAGTATCATGGCATTGAAGCGGGTGCTGAAAGGAAACC TCGAAGAAGACCAAGTGATGTTGCACGCCCTGCCAAGAGAAAAACAACCACTGATTCTGGCGATAGATTAAAGTCTGGCC CCAAAATTCTTAACCCTATTCGACTCCGAAAAAGCAAATCCCCTGCCTATATAGATCCTTTGGTGAATTCCAAGCTTGAG ATGATAAAGAACATTAGAGCACAGAGAGCTTCTGAAGAAACCAGACAAACTCATGCCATTGAACGAGCAAGGTAAACCCA TCTTATTGTGATCAGTGGTAGAATTTATATTATGTTACTGTGTTCTTTCTCCATTTTTCTGTCAAAATTAAAATTTGGTA CCTCTGAGTTCTGATGAACTTTTTTTAATGTGTATTTTGAAGTTAATGGCGTCTTTGTTTCTATTGATTACTTATGCTTT TGTTTGGAAAAAATCATAAATGTATGCTTTTACTTTATTTGGTTCCAACTGCAGCAGTTATGCCGTATATATTTCAAGAA ATAATATGTTATCACAGGCTATTGATTGCTGAGGCTGAGAAAGCTGCCAAGGCTCTTGAGGTTGCTGCGACAAAGAGCTC CATTGCACAGTCTTCTCTCATAGAAACCAGAAAGCTTATAGCTGAAGCTATTCAAACACTTGAATCCATTGATACACAAG GTGTAACTGAGAGTAATGTTCCTTCGGTGGGTTTGGATGAGATCAGTGAGGAAAACGGATCAGCATTCAAAGTTCTAGAC CAATCCCAAATGGCCCAAGTAAATGGACACTCGACATTATCATCAAGTGACTACAAGTTCTCTGAAGATTTTGGTGAGTT TCCCTTGGAGAAACCAGTTATTGGTGATCAAGAACTTCACCTAACCAATGGCTGTGCTTCACTACCTTATACTTTAATTA GCCAGATGAATGAATCTAGTCCATCAAATGAACAAAGGGAAGCAGAACAGGATCATTGCAGTGAACGCAAAACAGATCCC TCTCCAACTGTGATGGGAACTCAGTCTCTTGAAGATGGGACACTATCTAGATCACCTACTGTAGTAACTAGAAAGTGGGT TCGCGGAAGGCTCGTTGAAGTGGCTGAAGAGGAAAAATAAATTGTGTAAAGCTTAGCTCAGTTTTCAAACACAATACATA GCAATGCCATATCTTTCGCTGCATGTTATGTAGATCACCATAAGTACCACATATTTTTATTCCTTGACAGTGTTACAAGT GCTATGCTGCACTCATTCAAATCATGATTTGCCTCCTATCAGCGCTGCAGCACCCAACCACGTGTAGGAAGGCAGGTGCA CTTCTGTCAGTTCACTAGATTTTCTAATTCAGTTAATCATGCTACGTTAAACTATGTATCAATCATATGAATATTTTGTT ACATTATAGCTTTGAGTTGGTTTGAGTACTTAATGCTGTAGTTTCGCAGCAACTGCAGAGATTTGAGTGCCAATTGCCTC TCAGCCAGGAAATTCTATTGTAAGAGGGAGGTTGCATGGGTTGACGAATTTTAGTTCTACATTTCTAGAAAGAAAGAAAG AAAACTAGATATAATGTTGAATAGTTATGATTATAGATAGATAACCTGTTTCAATTGCGTTTATACTCTTGGAAGTTACA AATACAAAAAGAAAACGAAAAGGCAAGTAAACCACCAACAAGGAGCTCTTGTAGTTGTATCCACCAATCTGATATTGAGA GGATGGGAAAGCTCGCCTTGCAAGACCCTTGGAGACTACTTTGAGAGCAGCTGGTAGGAGTTGAGGAGCAAATGAAGATA AGAGGATTCAGGTTTCATCAGATTTGGTGCTGAGATGGGAGTCTATAGTCTTCTTAATCTGTTTCCTCTTAGCTTCTTTC TCTTCTTTACCTTTCTGAATATTCTTCTGCACTTCCTCCTTCTGCAATAACAGATAGAGTTGTGAAGACAATACTATTAT TAAATAACAAAGAAGCAAAAGAAAATGGAAGATATCGTATGTCGATGATATCAGGAACCGGCGGCTTAACTCCATGGACT GCAGCCCGGTTGGAGGCCTTGGTAGTTAGAGGCTTCCAATAAGTAGCAACAGGACTGTTCCTGTTCAAACTCCAGTAGTT CTTTCCAGTCAACAATAAGTGTCTTGTCCTCTCCATGCTTCTCAACTGAATTGGATTTTGGTCGGGACAAATTTCAATTA GCTTAGCATTTAGCTCCTGTACTGAATAAGCTACAAAGTTAGCTGAGCCAATAGCCAGGATATATATCATATGTTTTAGC TGCTCAAAGTCTATGATTCAG
CDS sequence (LotjaGi1g1v0799100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTTGCTTGAGATGACACTGAGGGCGCCTATGCCTTCTTCATATTACCATGCCGGAAGAGACTCAAGTTGGAAATC CATGGACTTTGACAAGCTTCAAAAGGAGAATTTCAATGTCGGCCGCCTTAACTTGAACAAGTTTCCATTCCTTATTAAGG CAGTTGCTACCTGTGAACCCGACACTTTGCTTCCCAAACACGACAAATGCGACCTGCTTCCCAATCCTCACTCTTCTCTT GATTTTTCTGACGACGAACCAGAAGTTGCTCTCCAGGACTGCGAAAAGTTGAGAAGAATGAGGATTTCAAAAGCTAATAA AGGCAACATGCCATGGAACAAAGGAAGAAAGCACAGTGCTGAAACTATTCAGAAAATCAAGGAAAGAACAAGGCTAGCAA TGCAGAATCCTAAGGTCAAATTGAAGTTGAAGAATCTCGGGCATGCACAAACCACAGAAACGAAACAGAAGATTGGTGCT GGAGTGAAGTTGCGATGGGAAAGGAGGCGTGGAATGAAGGTGGTACAGGAGACTTGCTGCTTTGAGTGGCAAAATTTAAT TGCAGAAGGTTCAAGGCAAGGCTATGTTGGTCAGGAAGAGCTGCAATGGAATTCCTATGAAATCTTGGATGAACAGTTGA AGCAGGAGTGGTTGGTGAGTATTGATCAAAGGAAACGAATGCCTGGGGCACCAGGCAGCAAAAGAGCGCCCAAGTCCCCT GAACAGAGGAGGAAAATTGCAGAAGCCATTGCTGCAAAATGGGCTGATCCTGAATACCGCGACAGAGTTTGCTCTGCATT GGCCAAGTATCATGGCATTGAAGCGGGTGCTGAAAGGAAACCTCGAAGAAGACCAAGTGATGTTGCACGCCCTGCCAAGA GAAAAACAACCACTGATTCTGGCGATAGATTAAAGTCTGGCCCCAAAATTCTTAACCCTATTCGACTCCGAAAAAGCAAA TCCCCTGCCTATATAGATCCTTTGGTGAATTCCAAGCTTGAGATGATAAAGAACATTAGAGCACAGAGAGCTTCTGAAGA AACCAGACAAACTCATGCCATTGAACGAGCAAGGCTATTGATTGCTGAGGCTGAGAAAGCTGCCAAGGCTCTTGAGGTTG CTGCGACAAAGAGCTCCATTGCACAGTCTTCTCTCATAGAAACCAGAAAGCTTATAGCTGAAGCTATTCAAACACTTGAA TCCATTGATACACAAGGTGTAACTGAGAGTAATGTTCCTTCGGTGGGTTTGGATGAGATCAGTGAGGAAAACGGATCAGC ATTCAAAGTTCTAGACCAATCCCAAATGGCCCAAGTAAATGGACACTCGACATTATCATCAAGTGACTACAAGTTCTCTG AAGATTTTGGTGAGTTTCCCTTGGAGAAACCAGTTATTGGTGATCAAGAACTTCACCTAACCAATGGCTGTGCTTCACTA CCTTATACTTTAATTAGCCAGATGAATGAATCTAGTCCATCAAATGAACAAAGGGAAGCAGAACAGGATCATTGCAGTGA ACGCAAAACAGATCCCTCTCCAACTGTGATGGGAACTCAGTCTCTTGAAGATGGGACACTATCTAGATCACCTACTGTAG TAACTAGAAAGTGGGTTCGCGGAAGGCTCGTTGAAGTGGCTGAAGAGGAAAAATAA
Protein sequence (LotjaGi1g1v0799100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLLEMTLRAPMPSSYYHAGRDSSWKSMDFDKLQKENFNVGRLNLNKFPFLIKAVATCEPDTLLPKHDKCDLLPNPHSSL DFSDDEPEVALQDCEKLRRMRISKANKGNMPWNKGRKHSAETIQKIKERTRLAMQNPKVKLKLKNLGHAQTTETKQKIGA GVKLRWERRRGMKVVQETCCFEWQNLIAEGSRQGYVGQEELQWNSYEILDEQLKQEWLVSIDQRKRMPGAPGSKRAPKSP EQRRKIAEAIAAKWADPEYRDRVCSALAKYHGIEAGAERKPRRRPSDVARPAKRKTTTDSGDRLKSGPKILNPIRLRKSK SPAYIDPLVNSKLEMIKNIRAQRASEETRQTHAIERARLLIAEAEKAAKALEVAATKSSIAQSSLIETRKLIAEAIQTLE SIDTQGVTESNVPSVGLDEISEENGSAFKVLDQSQMAQVNGHSTLSSSDYKFSEDFGEFPLEKPVIGDQELHLTNGCASL PYTLISQMNESSPSNEQREAEQDHCSERKTDPSPTVMGTQSLEDGTLSRSPTVVTRKWVRGRLVEVAEEEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 40 | 550 | 511 | 6.2E-156 | – | |
| PANTHER | 40 | 550 | 511 | 6.2E-156 | – | |
| Pfam | 101 | 126 | 26 | 1.9E-5 | ||
| MobiDBLite | 224 | 244 | 21 | - | – | |
| MobiDBLite | 275 | 302 | 28 | - | – | |
| MobiDBLite | 275 | 310 | 36 | - | – | |
| Coils | 354 | 374 | 21 | - | – | |
| MobiDBLite | 489 | 531 | 43 | - | – | |
| MobiDBLite | 496 | 510 | 15 | - | – | |
| MobiDBLite | 512 | 531 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0799100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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