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IPR003611

Source: InterPro

Description

IPR003611 is a Nuclease associated modular domain 3.

<p>NUMOD3 (nuclease associated modular domain 3) is a DNA-binding motif found in homing endonucleases and related proteins. It occurs on its own or in tandem repeats in GIY-YIG and HTH proteins. It constitutes a β-turn-loop-helix subregion of the the DNA-binding domain of I-TevI homing endonuclease ([swissprot:P13299]) [[cite:PUB00013165]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 4

Transcript Name Description Predicted domains Domain count
Lj1g3v5062690.3
– Endonuclease [Arabidopsis lyrata subsp]. lyrata] gi|297847780|ref|XP_002891771.1|
Domains
6
Lj3g3v0428490.1
– PREDICTED: caldesmon-like [Cicer arietinum] gi|502177400|ref|XP_004516074.1|
Domains
5
LotjaGi1g1v0799100.1
– Muscle M-line assembly protein; TAIR: AT1G53800.1 muscle M-line assembly protein; Swiss-Prot: sp|Q83I37|GPDA_TROW8 Glycerol-3-phosphate dehydrogenase [NAD](P)+]; TrEMBL-Plants: tr|I1JS71|I1JS71_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0799100
Domains
6
LotjaGi3g1v0042700.1
– Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; TAIR: AT1G53250.1 histone-lysine N-methyltransferase, H3 lysine-79 specific-like protein; Swiss-Prot: sp|Q865B7|PRGC1_BOVIN Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; TrEMBL-Plants: tr|K7LUT9|K7LUT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0042700
Domains
5

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
PTHR34199:SF1 PANTHER 1 25.00