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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0799300 |
| Transcript ID | LotjaGi1g1v0799300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio; TAIR: AT1G72320.1 pumilio 23; Swiss-Prot: sp|Q9C552|PUM23_ARATH Pumilio homolog 23; TrEMBL-Plants: tr|A0A072U4J4|A0A072U4J4_MEDTR Pumilio-family RNA-binding repeatprotein; Found in the gene: LotjaGi1g1v0799300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136966558..136973286) extracted from Lotus japonicus Gifu genome v1.2.
ATAGGTGTGGGTAGGGGCCGTTTACCTATACTTTTGGGCAAAAAGAAAACAGAAAAGGGTTTCGAATTGGAGTGTGAATA CTGAATAGGGTTTTAATCGCTTGATAGTAAACTATACGCGTTTCATTCCATTCCATTCCATTCCGGCCACCACCGAGTGC CGCAGTGAGAGATAGGGTTTGTTGCTTTGACTCGGTTATGGTTTCCGTTGGTTCGAAAGCAATGGGCCACCACGTTCACG ACTGTGAATCCCACAGACGTAACAAGAAGAAGCAGCACCAGCACCAGCACCAGCAGCACCACCCAAACAAAGGTGGCGGT TCTTCCTTCCATTCCAACAAACGCACCTTCACTCCCGCATCTCGTGTTAGGTATTCATTCATTCTTCTTCTCAACCTCAT ACTCCTTTCCCTTCAACCTCGCTCAGAATCTTAGCTTATCATTATTATTATGTCCTTGATTGATTGCAGGAAACAGATTG ACCCTGAAACAACTACCTACTTCTCAGAAATCGCTAATCGACTTGAAAGTGAAGAGGTTGAATTGGAGGAACGCTCACTT ATATGTGCTAATGCCCTCGAAGAAACCAGAGGAAAAGAATTTGAAATTGCTACTGATTATATTCTAAGCCACACTCTTGA AACCATCCTCCAAGGCTCTGATGTAGACAGCCTCTGTGCCTTCCTCAAGACTTGTGCCAACGACTTCCCCTCTATTGCCA CGGATCAATCTGGTTCCCATGTAGCCCAGACCGCCATTAACTCTCTAGCTCTTCATCTTCAAGACCCTCTCGTTGAGGAT GCTTTAACCATCATATGCAAGGTAGGTCTCTTGCTTTTCTAATTCAAACATCGCATTGCTTCAAATAATTTTTTATTGAC TCATATCAGCTTGTTGTTATTATGCTTTAGATGTAAATTCTTATATGCATACTTGTCATTCTGCAGGTGATTGCAGCTAA TTCTGTTGATGTAATGTGTAACTGTTACGGTTCTCACGTGCTTCGAAGTCTTCTTTGCCTTTGTAAAGGAGTGCCATTGG ATAAGACTGGATACTATATGTCAAAATCAACAACAGCTCTAGCTGACCGCTTCAATTTCAAAGACTTTCCTTCAAAGAAA GATGATGCAGCAGATTTTCAGTCTGGGTATCCAAATTTACTGAGATCACTTGTTTCAGAGATGTTAAAGCAAGCTAGAAA ATGCATCAAGGCCTTGCAAGTTGACCAATTCAGCAGCTTGGTTTTTCAGGCATGCTTTAATGTTCTTTTTTGGCTGATAT TGAGGAGCATGTATGATGTTTTCTATTGTTTGAGCCTTTAGGTTCTGATAATCCATAGTTCCTTAAATGGGATGATAACA TTTTATATGGTGCCATGATGGAGATACTGTTAGTTTTGGTTTCTCTTTGATTTTTGTCATTTAACGAGATTTTTTCCAAT TAATGGCAGACTACTCTAAGGGTGCTTGCAGGCAATGATGAAGAGTTGCTACATGTGATTCCTGTCATTCTTGGATGCAA AAATCAGAATAATGCAGAGGGAAATTTTATAGAAACTACAGTTGTGCCGCAGCTCTTGAGTTTGTTCAAAGAAGCTGAAT TTAGCCATCTAATGGAGGTGAGCAACCTATAGTGAGGGAAAACTGCCAATAATTACCTAGATTAGTACAAGAGCTTGTGA ATAATACAAAGAAATTTAATAGAAACTACATGTAATTACTAATTCTTATTTTTTTGATTTTTTCAAACAAAGTTTCATAT ATTCCTTTCGAACTGTCTATAGTACATGAGAACTTTTTCTTTAGACTTTCAGTATAAAAGCAAATTACCATTGTATATTT TCAAACTAGCCCTTCCACATGGATAATCTCAAACAAGGTTTGATATTCAAGTATCAAATTGTGTATTATTGATGAGATTT GTTAGTCCCTAAATATCTCCTGGCGGACAGTGGTCTGATAAGTGACAATTATTTATGTTATGCTCATAAAGTGTTTTGGG ATGCTTCATTCAAACTTGTTTGATGTCTATTTTCATCTACCATTACATACCAAACAGTTACATGCTTACACATTTCTTTA CGGAGGCATAAATAAATTATTTTTCTAGAGTGATTTTGATGTAACCAAAATTTCTAAATGTCTTGCAGGTTGTTTTGGAA GTATCTCCCAAGGCCTTGTTCAATGAATTGTTCACAAAAGTATTCAGGAATTCCTTGTTTGAGTTATCATCTCATCAACA TGGGAACTTTGTTGTTCAAGCATTGATTTCCCATGCAAACAATCAAGATCTGGTATTATACCTAGTTGTGTTTTTGTCTA AAGATGATGACATTTGCTTTACGTTGATCATTGACATTTTTCACATGTTGTTAGGCACTGATTAATTTTTTCTTCTGTAT TGGTTACATGCTATTGCATGCAATACATTTCTCTTTAGCATATTTTTTTTTTGTGATGCCTATTTATGCTATAATTTTCT CTTTGTTAAATGTTTTCCTCATGTTTGTTTAAACTTTTAATCGTTTGATAGATGGAGTTGATCTATGAAGAACTCGCTCC AAATATGGAGGGTCTTTTCCAAATGGGAAGGTCAGGAGTGGTTGCTTCACTTATTGCTGCCTGTGAAAGGCTTCATGTTA ATGAACACAAGGTTTGCACTTCAGTTGCAGTATGTCTGATTAGTGGGTTCCTATATACTTATCTGTTTATGATTCTAGAC TGATTTATTGCTTCTAATAACCAACTATAAATCTACATTGGTTGCATCAGAAATTGAAATGTAAATGGCATTATTTACGT TTGTGCTGAAGTTATTATACTTCTTAATTTTGTTTCTCATCTTTGTGAAAACTTAATGGTCTTTCTGTTACTTTGTGCAG TGCTGTGAAGTCCTTGCAAAAACAGTGTGTTTAGCAGATGATTCTCCAAAGTGGATTGTCCCAAGACTACTATTTCTTGA TAGTTATTTCACCTGTGAAGATAAATCCAATTGGAGCTGGCGAAGTGGCGCTAGAATGAATGTTATGGGCTCTCTTATCC TGCAAGCAATATTCCGGTTTAAAAGCGTAAGCAACTTTCTTGAAATAGATGCTTTCTTTTGGTTTTCAATTGAAAAGGGT AGGGGGGATGCACACATGTGAGTGCTCCCAAGGTGTAACCATATGAACCATTGGATTCCCAACTTGAGTGCATTTTTATG TGAAACTGGTTTTTCTTGGGCTGGAAGGCGTTGCTACGTAGAATAAATATCTCATTGTTGGCTTAAGTCCTTTCCTAGAG ACCTTGCATGAGGCTTAGAGATGGAAGCTTCATAGAAGAAGCAAGCTGGTCTTGAAACATTTCTAAGACTAGGTATAAGA CTTGCATCCCCAACTACCACCCCAGAAATTTGGAGCTGTGATTATTATGATTTGTTATTCTTACTGTGGTAGTTAATGAA AAACACGGCTATAAATCACTTGTCTTTGCTATAGTATTAAAGCAAGTGGCGCTTTTACTTTCTCTGTAGGAAGGTATCAG GTTTATCTCACGTATGCATTAAAAACTTGTATTCATTTTCTGTATTCTGTTGTCATTGATTTTATTTTCACAGGAATATA TACAACCTTACATCACCAGTATAACCTCCATGGAAGCAACTCATGTGCTTGAAGCAGTGAGAGATGCCAAAGGATCACAT GTTATTGAGGCTTTTCTGTGTTCAGGTGCTTCTGGAAAGCAGAAGCGCAGATTAGTTACAAAGTATGTCTTTCAACTATA TTTCTTGTGTTTTTATTATTCTCTGGGAAATTCTTGTTTATGCTAAAGGGATTAATGCGATAAATATGATATGACGAATT TGTTTTCTATTTCTATATTAAACGTCAAAATCTTCATCTCTATGGTTTGTATTTTAGTATCATAGTTACATGCACATTAA TGAGAGTAATAATATGGTAATCTACGTTTTATTTAAAGTCACAGTTCATTCTTTGTGGTTTGGGTTCTCTGGGTATTCTT TCTTTAGCTAGCATTGAATGGACAGAAATAACTATTTAAATTCTTTCCTAAATGGAGAGCTTCAAATTCCAAAATTAGAA GTTGTGGATTATAGTTACCAAAGCGTAAGTTTTGGAGGCTCCCATTGTTGTTAGCTATACTTTATAGACTTAGCAGGGCG ATAATATCAAAATAGCAAGAAATTTGCATGTGATGTTCTAATGTAATGCAATTACACTATTGATTATCTTTTTTACATTT TTGTCTTTCATAATTTATTATGTAGACTACAAAGTCATTTTGGAGAGGTAGCACTCAACTCATCAGGTGCTTTTACCATT GAAAAATGCTTCACTTCCTGTAATCTGTCACTAAGAGAGGCTATAGTGTCTGAGATATTGGCTGTCCGAAGTGAGCTTTC CAAGACAAAGCAGGGCTCTTACCTATTAAGGAGACTAGATGTTGACGGGTATGCTGTTGGCTAATTACTGTATTGTCGAC TGTCCTGATTTATTACTTTCCAATTCGATTGAGAATTTTTTTTAACCACTTGATCTCTAAATAAAGAGTACATAGATCTA TTTTCGTAGAAACAGAAGCATATTACAAGGCACAAGCTTTTTGTGTTGGTACCTTAATGCCTATGACTATTGCATTTTTG GATAACCGTTGGAAGTGTCCAAACGAATGTGATTATGAAAATCCATATGTTTGGTTACTTTGAGTTCAACTAAAAACATC CAAGTATATTTTACTTCTTCAAGTTTAAACTCAATTTTAACCAAAATCAAAATAATTCAAAATCAATTTTGCTTAGCCTA ACATATGATTGAATGTTGTAGTACTAAATGTTTGTTTTATTTTGTTCAAGCTATTCTTCACTAATGATGCCTTTGCTTTA TTGCCACAGATATGTTACAAGTCCTGATCATTGGAGGTCAAAACAAACATCCAAAGAATCTACTTACAAAGATTTCTATG CCACGTTTGGCTCCAATGATACAAAGTCGTCAAAAACTGATGGCTTTCTTTCTGACACTTTTAGTAAATCAATTCCAAAA ACTGTAAAGGAAATGAGAAAAGAAATTGACCAATCCCTAGGTCCTGCTGCATCATTTCTGAGCACAGATGGGTTTAAGAG AAACCCAAAAAAAGAAAAGCAGAAAAATAAGAAAAATGCTCAAATTGGTGGCGATGATGATAACTCCAGTAGGAAAAGTA AAAGGTCTAGAAGGGTTGAAAGTGGAGATGATATTACCTCTAATCCGGCGTCCAAGAAGACTCTAAAGAAACGGCAAAGA GATGGTGATGTATCCGAGGTTTTTGTGAAGAAATTGAAGGCATCAGATAAGTAGAGTGTAAGACAATTTTTCAGTTTTAA CTAAAAGATGACATTAAGCATGGTCAATTGTTTCCTCTTTGCTAGTGATTTTATATCATTTACCACATGTAGCACAAATA TGTAACTGGAACAAGAAATCACATTGAATAAGTTATAAATATTTTCCTGCTATGAATCTCCTCCAAACATAGTATTTTGT TCTGTCTAATATATCATCAGTCTTTTCTACAAATCTGGAGATCGATCCCCTTATTTTATAATACCAATATTACATACAGA TTGAAGTATATCACAGAACTCAACAAGCTTAGTTAGCAAAGCTGGTAAATACTATGTAAGTTGAAGTACTAACAGTCTTT GGCACTTGTCTGTTAGAAGGTGAAATACCAGTGTATACTGACATCCTTATGCTTGTTTAGAAGAGGCAATAAAAATGAAA TGAAAGAAATAAGAAAAGGAAAGAGTGGGGTAATTCGTTCTATCTTTCTCAGCCGTACGCTGGAGGATTGAACCTGCGGT AGAAATGTAATTTTCTTTTTGTCAATCATTAGCAGCATATAATGGAAAGGCTTGAGAGTTGAAACTGTTAGTAGTAACAG TTACTTGTTTTGTGTGGGATTTGATTTGCTTGGAGGTATCCTTCGGAAACTTGAATCTACCTTGGAAAATTTCTTCCTAT ATGAGTGGAAATCTTTGAGAGCTTGAGCAGATGAAGTCTTGCTTTGCGGCAAAGAGCGCACTTGTATGGATGGGCGAGCC TCGACTTTGGCACTAGTAGACCAGGTTGACAATAACAGAGACAGTGTAAGAGAAAACGCAGCCAATGCTATGGACCAGCT CTTCATGGTAGTGGAGGATCTTGGTTCTTACGGTTCTGAGGCCTGTTGCATTGTGTTAGAGCTAAAGGTACTTACAATGA TGTTATGAGGGTGAACACTGAAGTTGATTCATTCTTTATTAGTGTATGAAACTGAAATGCTAGTACTCCAAGGAGTAAAA TTTTAATGGGGATCTGATCCCACAGGCATTGGGTTCATGTCATGTGGGATCATGTGCTCAACTTTTGACTGCTGCATGGA TCTTCTTGTACTGTCCGGACTTTGGATTTGGTGAAAATGGAGACAGAAACTTCAGGGAGGTCATGTGATCAGCCACGTGA TGGTACTATTTTTTAAACTTTTACTGTATTGCGGGAGTATATATTGGCAGCATAAAATAATGGCTTAAATAAGTTTTTCG TCCCTAATCTTTACCAAATGCTTGACATTGGTCCCTCGCCGGAGTAAAGGTGGGCTTTAGTCCCTAACCTTTGTCAAAAT ATTTGGTTTTGGTCCCTCCGGAGCTCTGAGTCAACGCCGGAGCTCCAGTCGCCCATGTGGCAATGCCACATGGGATTAAT GAGCTGACG
CDS sequence (LotjaGi1g1v0799300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGTTTTGGAAGTATCTCCCAAGGCCTTGTTCAATGAATTGTTCACAAAAGTATTCAGGAATTCCTTGTTTGA GTTATCATCTCATCAACATGGGAACTTTGTTGTTCAAGCATTGATTTCCCATGCAAACAATCAAGATCTGATGGAGTTGA TCTATGAAGAACTCGCTCCAAATATGGAGGGTCTTTTCCAAATGGGAAGGTCAGGAGTGGTTGCTTCACTTATTGCTGCC TGTGAAAGGCTTCATGTTAATGAACACAAGTGCTGTGAAGTCCTTGCAAAAACAGTGTGTTTAGCAGATGATTCTCCAAA GTGGATTGTCCCAAGACTACTATTTCTTGATAGTTATTTCACCTGTGAAGATAAATCCAATTGGAGCTGGCGAAGTGGCG CTAGAATGAATGTTATGGGCTCTCTTATCCTGCAAGCAATATTCCGGTTTAAAAGCGAATATATACAACCTTACATCACC AGTATAACCTCCATGGAAGCAACTCATGTGCTTGAAGCAGTGAGAGATGCCAAAGGATCACATGTTATTGAGGCTTTTCT GTGTTCAGGTGCTTCTGGAAAGCAGAAGCGCAGATTAGTTACAAAACTACAAAGTCATTTTGGAGAGGTAGCACTCAACT CATCAGGTGCTTTTACCATTGAAAAATGCTTCACTTCCTGTAATCTGTCACTAAGAGAGGCTATAGTGTCTGAGATATTG GCTGTCCGAAGTGAGCTTTCCAAGACAAAGCAGGGCTCTTACCTATTAAGGAGACTAGATGTTGACGGATATGTTACAAG TCCTGATCATTGGAGGTCAAAACAAACATCCAAAGAATCTACTTACAAAGATTTCTATGCCACGTTTGGCTCCAATGATA CAAAGTCGTCAAAAACTGATGGCTTTCTTTCTGACACTTTTAGTAAATCAATTCCAAAAACTGTAAAGGAAATGAGAAAA GAAATTGACCAATCCCTAGGTCCTGCTGCATCATTTCTGAGCACAGATGGGTTTAAGAGAAACCCAAAAAAAGAAAAGCA GAAAAATAAGAAAAATGCTCAAATTGGTGGCGATGATGATAACTCCAGTAGGAAAAGTAAAAGGTCTAGAAGGGTTGAAA GTGGAGATGATATTACCTCTAATCCGGCGTCCAAGAAGACTCTAAAGAAACGGCAAAGAGATGGTGATGTATCCGAGGTT TTTGTGAAGAAATTGAAGGCATCAGATAAGTAG
Protein sequence (LotjaGi1g1v0799300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVVLEVSPKALFNELFTKVFRNSLFELSSHQHGNFVVQALISHANNQDLMELIYEELAPNMEGLFQMGRSGVVASLIAA CERLHVNEHKCCEVLAKTVCLADDSPKWIVPRLLFLDSYFTCEDKSNWSWRSGARMNVMGSLILQAIFRFKSEYIQPYIT SITSMEATHVLEAVRDAKGSHVIEAFLCSGASGKQKRRLVTKLQSHFGEVALNSSGAFTIEKCFTSCNLSLREAIVSEIL AVRSELSKTKQGSYLLRRLDVDGYVTSPDHWRSKQTSKESTYKDFYATFGSNDTKSSKTDGFLSDTFSKSIPKTVKEMRK EIDQSLGPAASFLSTDGFKRNPKKEKQKNKKNAQIGGDDDNSSRKSKRSRRVESGDDITSNPASKKTLKKRQRDGDVSEV FVKKLKASDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 352 | 352 | 1.3E-122 | ||
| SUPERFAMILY | 5 | 261 | 257 | 6.33E-26 | ||
| ProSiteProfiles | 19 | 56 | 38 | 9.807 | ||
| SMART | 20 | 55 | 36 | 0.0017 | ||
| Pfam | 22 | 51 | 30 | 4.2E-6 | ||
| ProSiteProfiles | 164 | 201 | 38 | 7.054 | ||
| SMART | 165 | 201 | 37 | 330.0 | ||
| ProSiteProfiles | 202 | 237 | 36 | 7.311 | ||
| SMART | 202 | 237 | 36 | 27.0 | ||
| MobiDBLite | 331 | 397 | 67 | - | – | |
| MobiDBLite | 338 | 375 | 38 | - | – | |
| MobiDBLite | 383 | 397 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0799300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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