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IPR040000

Source: InterPro

Description

IPR040000 is a Nucleolar protein 9.

<p>Nucleolar protein 9 (NOP9) is an RNA-binding nucleolar protein found in yeast and required for pre-rRNA processing. It is a component of both the 90S pre-ribosome and the pre-40S ribosome [[cite:PUB00090410]]. This entry also includes APUM23 from Arabidopsis. APUM23 is a nucleolar PUF protein involved in pre-rRNA processing [[cite:PUB00090464]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0799300.1
– Pumilio; TAIR: AT1G72320.1 pumilio 23; Swiss-Prot: sp|Q9C552|PUM23_ARATH Pumilio homolog 23; TrEMBL-Plants: tr|A0A072U4J4|A0A072U4J4_MEDTR Pumilio-family RNA-binding repeatprotein; Found in the gene: LotjaGi1g1v0799300
Domains
9
LotjaGi1g1v0799300.2
– Pumilio like 23; TAIR: AT1G72320.1 pumilio 23; Swiss-Prot: sp|Q9C552|PUM23_ARATH Pumilio homolog 23; TrEMBL-Plants: tr|A0A0L9TG56|A0A0L9TG56_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0799300
Domains
11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 50.00