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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0799500 |
| Transcript ID | LotjaGi1g1v0799500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G14310.1 pectin methylesterase 3; Swiss-Prot: sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1; TrEMBL-Plants: tr|I3SR52|I3SR52_LOTJA Pectinesterase; Found in the gene: LotjaGi1g1v0799500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:137000952..137003776) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCGGCTACTGTGTCCCTATAGCTTGCACGCTTCTTCCACTCTCTTCTCCTCCCAGCCCCTCCCTTCAAACTCCGGCC ACCGACTAACCTCCACCGTCCGTGCCACATCTTCATCTCCGTCCAACCACCACGGCGGTGGAGGGTTAGAACGTTCAAAA AAATTGCAGAAACACCTAGCCCTTTTCCCTTTTAATAACCCAGAACCACAACCACCACCAATTTCCTCTTTCCCCTACAA TAACACCACCATCACCGCCGAGGCACTTCCCCTTCTTCAGATGGGACGATGTTGTGTGATCTCTATTTTTGTCTCTGGGT GGGCTGGCTATGGCTTTCAGAAATCTCCACATCAAGACGCGGTTTAATGGTGCCGTCACGGCGTAGGTCGTAGTCCTAGG GGAGCGATTGGTGAGGGATTGTACAGTTATGTCGGATGTGTGGGCAATTGGTGCGGTGGTAATGAGAAAGGGATTGTACG GTGATTTGGGATGGTTTGATTCTTAGTAGGTTTTTTTTTTTTTTTGGGTTAGCAACAAATTGAATTAAAGAGGCACAGAG GTAGAAACAGAAGGGGGGAGAACAGAGGAAGAAAGTAGAATAGAACTAACAACAAGCAAGTAGAAATGACCTGATTTGAA AATAGAATGACTATGTTTCTACGGTTCCAACACAAAATTAAAAACATTCCCAGTGAAACCCAAAGCCATCAACAGTCCCA ACGTTTTTAATCAAGAGGATATTCCAACACCAGAAGCTACCACCAATGCTATTAAATCCCACTTTACCCAGCTGAATTGA GACAAAGGATTGGTTGGATAATCCACTCAAAAGCTGAGAACCGAAATCCTTTCATTCTCCCGGTGGTGGTTTGAGGGTTT CTGTTGAATGTTGATGATGGATTGGGGGTGGAGAATATGGGTCTCGGAATGACTATGTTTTACATAGATAATTATTAAAA AGGGTGAGGGCATGTTTAGTAAGCTAAAATTCAGCTGGGGTCATAGCACTTGTCTTATTAAGTGTCCATGCATTATTGGT ACATATCACTCCTGTAGCTTACACTCAACTGAATTTATGGGCACTCAAGCATGCACCAATAATATATAATGGCGAAAATT AGCTTCTATCGGTTTCTACATTCTATTTTCTTCTTCATCTAGTTTTCTGTTATACTAGTATCAGAGCTATCAGAGCTCTA GCTCTGCTGCGCAGCCTCTCCCATGGCAGAACCCTTGGTTCTAATTGTGCAGAATGCACAAAATCCCTCAAGCCCACTCT ATATCCACCCGAATGAGAACCCATCATATCAGTGGTTCTGAATTCCCCCATTCTTTCAGAGAGCAATTACCAAGGTGAAG GAAAAGAGGAATAGTGTTGTCTGATTCCTACTAGGGATGAATGACCAATTCTCAGTTGTGAGATCCCAAATCACGTTGAT TGATCCAGTGCCACCTATATATAAGGTGTTTGCTCTGGTGGCACAACAAGAAAGACAGTTTTCAATTGAAAATGGAAGCT GTACAAGAGTCTTCATGAACATCACAAATACTGGTAGCTAGTGTTGATACTTGAAAGAACAACCTATGTCCCTGCTTACA AGTCTCATATATATATATATATATATATATATATATATATATATATATATATAGTAGAAAGGTTTGCTCATTTTACGGTA AATTGAGGCATATATACTATAGACATATGCTACAAAAAGCATGGATTCCCAATCCAACTTCATATTCAAGAAATAATTTT ATCATAGTTGCTAATTTTGTTTCATACTAATTAAAGCTAGATTTACCATTAACTTCTCTTATGTACATGTGTATGCTCTG CAGCCGTGGTGGGTGAAGGATTCTTGGCGCGAGACATTACCTTTCAAAACACAGCAGGTCCCTCAAAGCACCAAGCAGTG GCCCTTCGAGTGGGGGCAGATCTCTCAGCCTTCTACTTGTGCGACTTCCTTGCGTACCAAGACACCCTCTACGTTCACAG CAATCGGCAGTTCTTTGTGAAATGTTTAATAGCTGGCACTGTTGACTTCATCTTTGGGAACTCAGCTGTTGTGTTCCAAG ACTGTGACATCCATGCCAGGCGTCCCAACTCAGGCCAGAGAACATGGTCACTGCACAAGGACGCCTTGATCCTAACCAAA ACACAGGCATTGTCATCCAAAAGTGTAGGATTGGTGCCACCAAGGATTTGGAAGCCGTTAAGAGCAGCTTCCCCACGTTC CTTGGGAGGCCATGGAAGGACTACTCTAGGACTGTTATCATGCAATCTTCCATAACTGATGTCATTGACCCTGCTGGCTG GCACGAGTGGAATGGCAATTTTGCTCTCAATACCTTGTTTTATGGGGAGTATCTCAACACTGGGCCAGGTGCTGCCACCT CCCGAAGGGTTAACTGGAAAGGGTTTAAGGTCATCACCAGTGCTTCCGAGGCCCAGGCTTTTACTCCAGCTAATTTCATT GCAGGTTCTACCTGGTTGTCCTCCACTGGATTCCCATTCTCTCTTGGTCTTTAATTAAGTTGTGCGCATATATATGTACT TATATTTAACTCTAGGCTATGGCTATCCCAATTCCATCTATATTTGCTGTCATGTATGGACAAGGGCAATGTAGCCGTTG CTTTTGAAGAGGTTTCTTATAAATTTGTTTAAATTTGAATGTTATTTATTCATTTCGTTGTCGCTCTGAAACAATCTCAT GGTCCTTACTTTTAGAGATGAAAGTATGGAGGCATGGTGAGATTCTATTAACTAGTTGATGAAATGCAGTGTCTGTTTAT GATATATAAATTATTTCCACTGGAG
CDS sequence (LotjaGi1g1v0799500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCACTGCACAAGGACGCCTTGATCCTAACCAAAACACAGGCATTGTCATCCAAAAGTGTAGGATTGGTGCCACCAA GGATTTGGAAGCCGTTAAGAGCAGCTTCCCCACGTTCCTTGGGAGGCCATGGAAGGACTACTCTAGGACTGTTATCATGC AATCTTCCATAACTGATGTCATTGACCCTGCTGGCTGGCACGAGTGGAATGGCAATTTTGCTCTCAATACCTTGTTTTAT GGGGAGTATCTCAACACTGGGCCAGGTGCTGCCACCTCCCGAAGGGTTAACTGGAAAGGGTTTAAGGTCATCACCAGTGC TTCCGAGGCCCAGGCTTTTACTCCAGCTAATTTCATTGCAGGTTCTACCTGGTTGTCCTCCACTGGATTCCCATTCTCTC TTGGTCTTTAA
Protein sequence (LotjaGi1g1v0799500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTAQGRLDPNQNTGIVIQKCRIGATKDLEAVKSSFPTFLGRPWKDYSRTVIMQSSITDVIDPAGWHEWNGNFALNTLFY GEYLNTGPGAATSRRVNWKGFKVITSASEAQAFTPANFIAGSTWLSSTGFPFSLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 2.0E-77 | – | |
| PANTHER | 1 | 135 | 135 | 2.0E-77 | – | |
| Pfam | 1 | 121 | 121 | 5.8E-57 | ||
| Gene3D | 1 | 136 | 136 | 1.4E-51 | ||
| SUPERFAMILY | 2 | 135 | 134 | 6.91E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0799500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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