Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0799700 |
| Transcript ID | LotjaGi1g1v0799700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylthioribose-1-phosphate isomerase; TAIR: AT1G53900.1 Eukaryotic translation initiation factor 2B (eIF-2B) family protein; Swiss-Prot: sp|Q54I81|EI2BA_DICDI Translation initiation factor eIF-2B subunit alpha; TrEMBL-Plants: tr|D7TZK5|D7TZK5_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0799700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:137026483..137030003) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGATTCATGCTGATGAAGATGAATTTATATTTTTTTAATTGAATTTAGATTAAAATATTTTTTTATTTTTGTTAAAT AATTAAAATTTCTGACCTGTTATTTTTTTTAATTTTTTTAAAATCCACGTCAGCTGACTTAACACAGTCAGCATGCCATT TAAGCACTCGCCGGAGCTCCGCCCTCCGGTGAGGATCCGCTCCAAAAGTTTTTCAAACACGAGGACCATTTACAATAAAT TTTCCGGGGAGGGACTTACCTCAGACGGCGAGACAAAGACAGGGACCAATCTGATAGTTAACCCTTAAAATAACAATGAT ATTAAAATTGAAAACAAAAAATTAAAAGAGTTTAAGAGAGTAGGAACTTACCAACACTTTAAGGATGAAGTGATGTGGCG GAAAACTCTGCTTCCCGGGCAACAACAGCAGGGAGGGGATAACATGGATTTTGATTCTCAGTTACCTGGGTTGCGCAGCT ATTCTGCGTGATAGAGCTGGCGCTTGGATCTCCAGCGTGTCGACAAGCCACAACCATGGAAGTGCTTTCATGGTAGAAAT TCTGGCGGTGGAACTGGGCCATAGCCATGCCATGGAGCTTGGTTGCAGGGATGTCATATGTCTATCAGATTGCCTTCAGT TAACCAGTGTGCTGCAAACAAACATTGATGTTGCTTGCTTCTGGGATCGAGATGCCTTTGGTTGTGTGCGTTCAACTATG GGGAAATTGCAGCGATGCCACTTGCAGCATATAGAGCGCGACAAAAACAATACAACAAATCAACTAGCTCGGGAAGCTGC TAGAGAAGGCTCCCATGTTCGGATTTGGAGAAATCCTCCTTCATCTGTTTATTAGAGAGGAGGATCTTGAGAGAGCTTCA AGGTGTGAAGGAGTGAGACTTGAGAAAGATTGAGGGTGGGAGTGAGAATGAGAGTGAGAGATGTGAAAAAAAATGAAAAC AGTGGAGGTCTTTTTTTTTTTTTTTTTTGTCTTGGTTAATGTATCCTCACAACCGACAGCCGTGAGACTAATCCCTCGCC CTGCGGTCAACGCACTAAGCGGTAGGGGACAGTTGAGGTTTTTTATAAGCGTTTAAGACCACCAAAATTCACATTATTAA AAAAAAAACCTATTTAAAATTTAGATCGGTAATAATATAAAAAAAAATAAAAATGAGATGGGTAATGTACGGGTTCCAGA CTTCCAGTTATTGGATGTTAAACGGTGTCGTTAGTAAATGAGATGGGTGGTCTGCTAATTTGGTTGGTTTAACATGACAC AAAAAGGATCCTAATCCAGTAAATGAGTAGAGTAGAGTCGACTCGAGAGAGGGAAAATAATGTGGTGGAGATCGGCATCG TTCATCCTGGACAGGCAGCAAAACGACGACGGTTTGAGGGAGGAGGAATCTCTTCCTCCGCCGGGTGCAACCTCAAAACC TAACCCTAACATTTCCGCTTACTATGAGACGAGAGCGGCACACCACGGTGTGGTCACCAGCGACTGGTTGGCCCAGGCTC AGGCTGCCATTCAAGAGCCTACTGAGTTGGAAGTCAATGATAAGATTAAGCAGCAGCATCCCTTCAGTGTGATCGATGAG TTTAATAACTGGCGAAAACAACCCCACTTGGCCGAGGCCGTCGCCGCCATTCGCGCCTTGGCCGCCGTCATAAGGTCTAG CGAGGCTACCACCATGATGGAGCTCGAAATTGACCTACACAAAGCCTCGGATTCTCTCAAAGTAACCACTATCCTATCCT ATCTTATCTATTTCGATTCATTGATTGATTTTTCCCTTTTCTTCCATTATTTCTCTCTCTCTATGTCTCTGTGTGCAGTC CTGGGATACCACCTCTATCTCTTTGACCGCGGGCTGCGATCTGTTCATGCGATATGTAACAAGGACCGCTGCTTTAGAAT ATGAAGACTTCAACTCGGCTAAATCTCGCCTCATTGAACGTGCCGACAAGTTTGGGGAAATCTCCTATAAGGTGCTTGCT TATTCTTATTTCTTCTCACTGCCACTGCCTTATCATTTCCTTTTTTTTATTTTCTTTTTTCTTTTGCAGGCTCGCAAAAT TATTGCAATGTTGAGTCAAGATTTTATATTTGATGGTTGTACAATTTTAGTTCATGGTTTCTCCAGAGTTGTCTTTGAAG TTCTAAAGCTCGCAGCACAGAATAAGAAACTTTTCCGGGTCTTCTGCACAGGTTACTTTTACTTTTTGCCCCTCTTCCTC ACCTTCAGTTCACTTCTTAATTGAGTGGTTTTGTTAGTTTATTTTTGTTGATTGATCCGGCTAAACATTCCCGTATAGTG GGATCAAGTTTGCTTTTCATTCAACAGTTATAAGTTATAACCATGCACTTTAGCTTTACAGGATCTAAGTCCTGGTTGTT AATATTGGTTGTCAAGTTTGGTTTCAAATTTCTGTCACCATAGTTTCCAGTTGATCAATCTCCTTTAATCTCTTTGTGAA CTCTGTATCTTTGGCATCTTCATTATGTATCTGGGCTTTTTTCAAACTTGTGCCTATAAATTTGCAGAGGGAAGACCTGA CAGAACAGGATTACGTCTGTCCAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTTGTAATAGACTCTGCAGTTGCAT ATACTATGGATGAAGTGGACATGGTTTTTGTGGGTGCAGATGGAGTTGTCGAAAGTGGGGGCATAATTAACATGATGGGG ACATACCAAATCGCATTGGTTGCACACAGTATGAATAAACCAGTGTATGTCGCTGCTGAAAGCTACAAGGTATTTCTGAA ACTTATAGAAATGAACCTATTATGCTTAACATTATCTGCTCACCTGCACACATCCTTTTTTAACTATTGTTAAATTAATT AGGAATATCTGTTCCGTAGTTATATGTCTCGTTTTTGTTACTCTGCTGTACAGTTTGCTCGTCTTTACCCTCTTGACCAA AAGGATCTGTCACCTGCCTTACGCCCTATTGATTTCGGTGTACCCATTCCGTCCAAGGTTGAGGTTGAAAGGTCTGCGCG GGACTACACCCCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTGATGAGT TAATCCAGCTATACTTATAGTTATCTATGGATAACTTTTTATTTCCAATTTCTTTGAAAACGTTGGCTTCCATTCAAGAT CATTTGTCTCATGAAACACTTTGGGATATTATTTTTTATCATCAGGCATAAGGCATAAGTAGTTAATTCTTTGATTGAAT TTCTTTAAGCACAAGGTAAGCTCTACAAGTGCGAGGAGTTTTGAGTAAAGCTGCATTTCTTTTTTATTTTTCATTATAAC CAGAAATTCAAATAATTTGTTAGAGATACCAATATAACTGGCTTTCATTTTCTACGGTAACTCTACTTATGTATAAGCTA TGTTTGAAATGACATTTCAGATAGCTTAAAGTTTAATTGACTAGTTTAAAAGTTATTAAAAAGTGTTTGGTAAATGAGCT T
CDS sequence (LotjaGi1g1v0799700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTGGAGATCGGCATCGTTCATCCTGGACAGGCAGCAAAACGACGACGGTTTGAGGGAGGAGGAATCTCTTCCTCC GCCGGGTGCAACCTCAAAACCTAACCCTAACATTTCCGCTTACTATGAGACGAGAGCGGCACACCACGGTGTGGTCACCA GCGACTGGTTGGCCCAGGCTCAGGCTGCCATTCAAGAGCCTACTGAGTTGGAAGTCAATGATAAGATTAAGCAGCAGCAT CCCTTCAGTGTGATCGATGAGTTTAATAACTGGCGAAAACAACCCCACTTGGCCGAGGCCGTCGCCGCCATTCGCGCCTT GGCCGCCGTCATAAGGTCTAGCGAGGCTACCACCATGATGGAGCTCGAAATTGACCTACACAAAGCCTCGGATTCTCTCA AATCCTGGGATACCACCTCTATCTCTTTGACCGCGGGCTGCGATCTGTTCATGCGATATGTAACAAGGACCGCTGCTTTA GAATATGAAGACTTCAACTCGGCTAAATCTCGCCTCATTGAACGTGCCGACAAGTTTGGGGAAATCTCCTATAAGGCTCG CAAAATTATTGCAATGTTGAGTCAAGATTTTATATTTGATGGTTGTACAATTTTAGTTCATGGTTTCTCCAGAGTTGTCT TTGAAGTTCTAAAGCTCGCAGCACAGAATAAGAAACTTTTCCGGGTCTTCTGCACAGAGGGAAGACCTGACAGAACAGGA TTACGTCTGTCCAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTTGTAATAGACTCTGCAGTTGCATATACTATGGA TGAAGTGGACATGGTTTTTGTGGGTGCAGATGGAGTTGTCGAAAGTGGGGGCATAATTAACATGATGGGGACATACCAAA TCGCATTGGTTGCACACAGTATGAATAAACCAGTGTATGTCGCTGCTGAAAGCTACAAGTTTGCTCGTCTTTACCCTCTT GACCAAAAGGATCTGTCACCTGCCTTACGCCCTATTGATTTCGGTGTACCCATTCCGTCCAAGGTTGAGGTTGAAAGGTC TGCGCGGGACTACACCCCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTG ATGAGTTAATCCAGCTATACTTATAG
Protein sequence (LotjaGi1g1v0799700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWWRSASFILDRQQNDDGLREEESLPPPGATSKPNPNISAYYETRAAHHGVVTSDWLAQAQAAIQEPTELEVNDKIKQQH PFSVIDEFNNWRKQPHLAEAVAAIRALAAVIRSSEATTMMELEIDLHKASDSLKSWDTTSISLTAGCDLFMRYVTRTAAL EYEDFNSAKSRLIERADKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVFEVLKLAAQNKKLFRVFCTEGRPDRTG LRLSNELAKLDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPL DQKDLSPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 13 | 38 | 26 | - | – | |
| PANTHER | 35 | 381 | 347 | 8.9E-215 | – | |
| PANTHER | 35 | 381 | 347 | 8.9E-215 | – | |
| Gene3D | 81 | 182 | 102 | 3.5E-29 | ||
| Pfam | 96 | 369 | 274 | 2.1E-66 | ||
| SUPERFAMILY | 96 | 380 | 285 | 1.17E-78 | ||
| Gene3D | 185 | 381 | 197 | 8.2E-70 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of LotjaGi1g1v0799700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…