Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0000400 |
| Transcript ID | LotjaGi2g1v0000400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT4G02550.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7LCA7|K7LCA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0000400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:427450..428528) extracted from Lotus japonicus Gifu genome v1.2.
GGAGAGATGAGGGGAAAAAGGAAAATGACGGAAGCTAGTAATGAGGATAAGAAAGATGATAGCAGAGCTTACTTTACTTG GAACTTGGAGATGGACCGTGCACTTGCTGATATACTTAGAGATCAAAGAAGCATGGGAAACAAGAGTGATGGTGCATGGA AAGGAGTGGCATATAACACTGCGGCTCAAATGTTGTCTTCACGCTTCAATTTGCAACTTATTGGAGAGAATGTTAAAAAC CGCATCAAGCTGTGGAGATCATGGTATGGCATTGTTAGTGACATCCTTAGTCAAAGTGGTTTTGATTGGGATGGAACCAA ATATATGATTTCTGTTTCAAATGAAGATGCATGGAATGAGTATGTCAAGGTAATGATTTTTAATGTTATTACTATTTAAT TAAATTATTGTTTGTGTTAGTATTAATATGCTGTCTATTTTCTTTGTAGTCACATAATGACGCTAAGAGGTTCCGATTTA AGGTGATTGCTAATTGGGATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACGGGAATTGGAGCAGAGACATCCTTG GATGCAGATGACATCATGAGCAAAGAAGCAAATGAGGATGGAGCTTATATTGTGGATATTGATGCTGATGAACAAAGCTC TACAACAAGGAAAAGCAAACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAAAAGAATGGGATAATTACTTCAATGA ATAAAGTGGCTGAGTCATTGAGTGAATTTGTACAAGCAACTAGAAAAGGGGTGAAAAATGTCCAAGAAGTGGTTCATGAT GTGATGGATGAGCTAAAGAACATTCCGGACCTTAATGGCACTCAATGGCTAAAAGCAGTGGATTGGCTTTCAGAAAATCC AAATAAGTTGGAGATTTTGAAAGCTCTTCCCATTGAGAGAAAGAAAGATTACATCTTAGCTTTTATGCACTGATTCGTGA TTTTCTATAGTTTATGGACCCATTTGTAGTGTTTCCAACTTTCCACTATGCCACTGTTGAGACTTTTTTTTTATTTAATT TTCATTTGGATTGATGTTAGCACTTGTTACTGTTGAGAC
CDS sequence (LotjaGi2g1v0000400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGGAAAAAGGAAAATGACGGAAGCTAGTAATGAGGATAAGAAAGATGATAGCAGAGCTTACTTTACTTGGAACTT GGAGATGGACCGTGCACTTGCTGATATACTTAGAGATCAAAGAAGCATGGGAAACAAGAGTGATGGTGCATGGAAAGGAG TGGCATATAACACTGCGGCTCAAATGTTGTCTTCACGCTTCAATTTGCAACTTATTGGAGAGAATGTTAAAAACCGCATC AAGCTGTGGAGATCATGGTATGGCATTGTTAGTGACATCCTTAGTCAAAGTGGTTTTGATTGGGATGGAACCAAATATAT GATTTCTGTTTCAAATGAAGATGCATGGAATGAGTATGTCAAGTCACATAATGACGCTAAGAGGTTCCGATTTAAGGTGA TTGCTAATTGGGATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACGGGAATTGGAGCAGAGACATCCTTGGATGCA GATGACATCATGAGCAAAGAAGCAAATGAGGATGGAGCTTATATTGTGGATATTGATGCTGATGAACAAAGCTCTACAAC AAGGAAAAGCAAACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAAAAGAATGGGATAATTACTTCAATGAATAAAG TGGCTGAGTCATTGAGTGAATTTGTACAAGCAACTAGAAAAGGGGTGAAAAATGTCCAAGAAGTGGTTCATGATGTGATG GATGAGCTAAAGAACATTCCGGACCTTAATGGCACTCAATGGCTAAAAGCAGTGGATTGGCTTTCAGAAAATCCAAATAA GTTGGAGATTTTGAAAGCTCTTCCCATTGAGAGAAAGAAAGATTACATCTTAGCTTTTATGCACTGA
Protein sequence (LotjaGi2g1v0000400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGKRKMTEASNEDKKDDSRAYFTWNLEMDRALADILRDQRSMGNKSDGAWKGVAYNTAAQMLSSRFNLQLIGENVKNRI KLWRSWYGIVSDILSQSGFDWDGTKYMISVSNEDAWNEYVKSHNDAKRFRFKVIANWDDIVDLCAKDRATGIGAETSLDA DDIMSKEANEDGAYIVDIDADEQSSTTRKSKQPMEFKKGKSGEKNGIITSMNKVAESLSEFVQATRKGVKNVQEVVHDVM DELKNIPDLNGTQWLKAVDWLSENPNKLEILKALPIERKKDYILAFMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 24 | 119 | 96 | 1.0E-14 | ||
| PANTHER | 29 | 283 | 255 | 1.0E-103 | – | |
| PANTHER | 29 | 283 | 255 | 1.0E-103 | – | |
| MobiDBLite | 182 | 202 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0000400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…