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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0004300 |
| Transcript ID | LotjaGi2g1v0004300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger-like protein; TAIR: AT1G66140.1 zinc finger protein 4; Swiss-Prot: sp|Q39263|ZFP4_ARATH Zinc finger protein 4; TrEMBL-Plants: tr|A0A0B2RG97|A0A0B2RG97_GLYSO Zinc finger protein 4; Found in the gene: LotjaGi2g1v0004300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:1684672..1688282) extracted from Lotus japonicus Gifu genome v1.2.
GCAGCAGTTAGTTGTGTCCTTATGCTTACCTTTTTATAGAGTTTGGACAAACCTTTTTTATGCGCCAATGCTATTCTCCA TTTGATAGTCAGAAACTAATCCCTTTCGAGGCGTAGAGATCACTGAAGTGAACTAACAAAGTAGATGAGGGCATTCATGC ATCAGAAAGGAAAACAGTTTTCCTATATTGTGGTGATGATTGGCTCCAATAATATTGAAAAAAAGAAACATACTGAAATT CTTCATGCCGTGAATCTGATTACATATGCCTCAAAGGTTTCTCTCTTCTGGCCCATTTTGTTTATTCTTTTTTTTTCATT TGATAGATTTACTAATTGGCATGCTGCTTAGTAAAAGAAACTTGTCTTCAATTCATCATAAAACCTAAATTGGAGAACTT TTAATATGAGGAGTTCATAGTTTTGTTCCCTGTCCAAGTACTGGTCCAGTTGTTAGCTGTAGGAAAATGACTACCTACCA CTGAGGGGTCCTTTATTCGTAGTTTTCTGTAAAGATGTGATGTTACTAAAACAGGTCTTATGCTGCTTCTATATCTAAGA ATTTTTCCTGGATTTTTGTTGCCTGTTACTTTCAACTTGATGTTGATGCCAGAGTACCATACTTTTTGTATTTTCCATTC ACATGGATGACAATATAGATTGGTAGGGGTCATTTTGGAGAATTTGATTTCAGTCCCAAAATTGATTCTGCTAGAAGCTA GAGAGAGTAGTTTCTGGGTTGAACAAGATCAATTCTGAGATTTTACAGCTGAATTCCACAACATTACCCCCACAAAAATC ACTTTTTTCACAAATGTATCGAAACTTAAATCACTACACTTTCAATTCACTTCTACTATAATCAATTTTATCAAAATCAA TTTTATCCAAAATCAGTTGGGGCAGCGCTGTTCCAAACATGCACTTGGTCATTTTTCCTTGATTTTTGCTGCCTGTTACT GTGCACTTGATGTTGATACCAGAGTACCATTCCTTTTGTATTTTCCATTCACATGCATGAATACTCAATTTTTGTACTTG GTCATTAATGTAGGTAGGTGATGGTTATATGGTAATCTGACCAAAGTGAGGATTTTGTTCCATTCCAATTGCTTACCGAG AAAGAAGCTATCTCATTCTCTAGCAGATCCATCATATAACCATGATGACTCCAAACTTGAAGCTGGAAGCTGAAAATAAT TTAGAAGGAAGAAGCCAAGTAGGTTCCAATAACAGTGCCACCACTTCTGATGCTGATCCAAGTTCTGTTTCCCTTGACTT GACCCTCAACTTCAGTCCCAGTGATGAAATTGAAGAGTTGAAAGACACAAATGACACTAACAGTGAAGTGGGAGCTGAGG ATCATGCATCTTCACTACCTTCAATTCATAGAATTTTCTCTTGTAATTACTGTAGGAGGAAATTCTTTAGCTCACAGGCA TTAGGTGGCCATCAAAATGCTCATAAAAGGGAGAGGACAATGGCTAAGCGCGCGATGCGAATGGGAATGTTCACTGAAAG GTATACAAGCCTAGCATCTCTGCCACTCCATGGTTCTAATTTCCGGTCTCTCGGTATCGAAGCTCATTCTGCAATGCACC AAAGACACATGGCATCATCATCATTGAGGGTTCCTGATATGAGAGGTGCAGCAAGATTTGAGAAAGACTACTGTTTCGGG ACACCAATGTTCATGCAAGATGGTGATGTTGGTCTGTTTTGGCCTGGAAGTTTCAGGCAGATAGATGCAAGGGCTGGTGT TAATTTGGGGCATGAACATGAACAACATGCTCATAATTCAAGTCCTAGTTTTGTAGAAACTACACCTCCTGCACAGACAT CTACATCTCCTGATCTCAATCTGAGGCTTTAAGAAAAAAAAAAAGTGTCTTGTTCAATTTAAATAATAGAAGGCTTCTTG TGTTAACAACAAGGTAAGGCTGCGTACAATAGACTAATTGGTCGTAACCTTCTCCGGACCTGCGCATAGTGGGAGCTTTG ATGTACCAGGCTTCCCTTTAGTATTTTTGTAGCAATGGCACATCATGCTCAAACATTTACATCTATCGATGTCCTCACTC TGAAGTCATTAGCATCTTTCATCTTTGAATTTTCGTTCTCTTCAGACATGAAATGGTTAATTGGCAGGGCTTGCATTGTA CAGTGAGGTGTGTATTTGTAATTGATCAATGGTTTATTTGAAGTTTTCATCATTACTTGTTTCTTATCATTTGTATGTCG CATCATTTTTAATGTTGTAGCTAGGTACGGAGCCTTGGAAGATTTGGAGGCTAGACTCAGTTAATGTTGTACCATTTTTT TATTGATATGAGAATCAAATTTCATTGATGAGAAATGTCAGTCAAAGCTACATCTAAGATGAAAGGCGCGACATACCCTA ACCAAACTGAACTAGGAAAGAACAACTGAACAAGCTAAATTTGCAAGGTGATGAGCAATACAGTTCCTGTTGTTTATAAA TGTAAGAAAAGGAAATAAAGTTCAAATCTTCAGCCAAAGGGTGACAGTCATCCAAGAAAGTGGAATCAGTGAGAAAAAGG AAAGGAAGAGAAGGTACATTGCAGAATTAAAATTCAACAGAGTCCTTGAGAATGCAAAAGTGAGCCTATGTTAACCTAGT AGCTCATCCCCTTTCATACATGACATAATATCAATCCCCCCAAATCTTGCTCTTATCATTGTAGAGATTAAACACATGAC CGAATAGAAAATATGAAAATGTATGATCTTGTTCTACAGCCTATGAAACTCAATGGAATTTTACTAACAGATGGTAGAAA CACAAAAAAATAATCAATGCAGGTCCAGATCCAATTGAGCAACAGAGAAGAAAGGCAACTTTTAGTAGTTAAGTGCTTCA GAGCACAAATAATCAATACAGGTCAAGATCTGCATGCATAAGATAAAATAATGTGGTTAGTCCATGAGCATACATGATAT TCCTGAAGGAACATTTCCTAAGTTGTTACCTTAGCATTGCAGGAGAGCATATGGCATCCTAAATTGGGCCGATTAAGAAG AACATATGAAAGGAAAATCAAAAGACTGAATAAACATTCAATAAGTTGCTGGGCAGAATTAACACTAACCGAATGGATAA ATAATAAAAGATGTTACTTTGGCCTTGGAGGAGAGCAGATGGCAGCAATGCAGGATCAATTACGAATAACACATGAATGG CAAATAAAGGGTTAGTAAATTTCAATGAAAATTAAAAGTATGGAAGATTGATGGATTTAATCGAAGGTTAGGGAAGGTGG TTTGGCTGGGGAAAGAGGAAGCGGTGACAGCGATGGCTTGGCTGAGGAAGAAGGAATGGTGCCGCGAGTTTGGGTGTTGA AGGAGGTTGTGTCGATTTGGGTTTGATGGAGGTGGAAGGGGGATCTTATATCGCTGGAATGAGGCTGCAGAGAATGAAGC GGCCGAATCAGGGGAGAAACTGAAACGGAAGACTTTAGAAGAGGTGGAAGATTGAAGAACGAAAATGTATCGCGCCTTGA AGAGGTGGAAACGAAAACGGCAAAGGTGATAACATCTAGTGAAAGAAACAAATGGCCACGATTGAAAGGGAAGGACGGCT AAGATTTACTC
CDS sequence (LotjaGi2g1v0004300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGACTCCAAACTTGAAGCTGGAAGCTGAAAATAATTTAGAAGGAAGAAGCCAAGTAGGTTCCAATAACAGTGCCAC CACTTCTGATGCTGATCCAAGTTCTGTTTCCCTTGACTTGACCCTCAACTTCAGTCCCAGTGATGAAATTGAAGAGTTGA AAGACACAAATGACACTAACAGTGAAGTGGGAGCTGAGGATCATGCATCTTCACTACCTTCAATTCATAGAATTTTCTCT TGTAATTACTGTAGGAGGAAATTCTTTAGCTCACAGGCATTAGGTGGCCATCAAAATGCTCATAAAAGGGAGAGGACAAT GGCTAAGCGCGCGATGCGAATGGGAATGTTCACTGAAAGGTATACAAGCCTAGCATCTCTGCCACTCCATGGTTCTAATT TCCGGTCTCTCGGTATCGAAGCTCATTCTGCAATGCACCAAAGACACATGGCATCATCATCATTGAGGGTTCCTGATATG AGAGGTGCAGCAAGATTTGAGAAAGACTACTGTTTCGGGACACCAATGTTCATGCAAGATGGTGATGTTGGTCTGTTTTG GCCTGGAAGTTTCAGGCAGATAGATGCAAGGGCTGGTGTTAATTTGGGGCATGAACATGAACAACATGCTCATAATTCAA GTCCTAGTTTTGTAGAAACTACACCTCCTGCACAGACATCTACATCTCCTGATCTCAATCTGAGGCTTTAA
Protein sequence (LotjaGi2g1v0004300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMTPNLKLEAENNLEGRSQVGSNNSATTSDADPSSVSLDLTLNFSPSDEIEELKDTNDTNSEVGAEDHASSLPSIHRIFS CNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSNFRSLGIEAHSAMHQRHMASSSLRVPDM RGAARFEKDYCFGTPMFMQDGDVGLFWPGSFRQIDARAGVNLGHEHEQHAHNSSPSFVETTPPAQTSTSPDLNLRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 4 | 236 | 233 | 1.6E-64 | – | |
| PANTHER | 4 | 236 | 233 | 1.6E-64 | – | |
| MobiDBLite | 15 | 39 | 25 | - | – | |
| Gene3D | 68 | 124 | 57 | 2.6E-5 | – | |
| SUPERFAMILY | 77 | 107 | 31 | 4.68E-6 | ||
| ProSiteProfiles | 79 | 106 | 28 | 11.302 | ||
| ProSitePatterns | 81 | 101 | 21 | - | ||
| MobiDBLite | 204 | 236 | 33 | - | – | |
| MobiDBLite | 213 | 236 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0004300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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