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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0006200 |
| Transcript ID | LotjaGi2g1v0006200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|A0A0B2PYN4|A0A0B2PYN4_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0006200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:2177928..2181668) extracted from Lotus japonicus Gifu genome v1.2.
CTGTATTTTTAAAACAATAAAAATAGGTTTTAGGTTATTTGTTTTCTGTTTCCTCACTTTACTCGCTGAAATCGTGCACG CATATCTCGCGCTCACGTATCTCCCTCCCTCCTTCTCTATATTACGCGCGGTTTTCCCCTTCTCGTTCTCCATTGCTGTA AGCTCATGTCTCTCTGGTGAGTGTCTTCTTCACCTTATTTTTCTTCGCTCCTTTTTATCTCTCTTTAATCCTCAGCCTTT TGTGTCTCTCTACTCTTTTCCCTCTTTTCCTAATCTGTGATATCTTCTTTGATTTTTTTTTTCTCAAATTCAACACAGAA TTGAATGCAAAATATTGATACCAAGTTGATTTCTTGAATATCCCAAAAAAAATCTGCAATTTTGTATATATTCATGTATG GGGCAGCGTAATATTGATACCAAGTTGATGACAATAGAATAAGCTGTGATCCTTTTGAATAGAACTGTTGCTAATTTGGT TTTCATGTGACTTAATTGGGATTTTTTTCTGTTACAGTTGCATAGAGGAGATTTCTGCTACTGGTTAGTCTTTATCTTTT GTTCATAGTCTCTATATTAAGTTTACTTACATTAATAGAATTAGTCTCTTCTTTGGTTGAACATGCAATTCATAACTGAT AAGGCATATTGAGAGTTTATTTGATCAAATTTGTGTTATGATGTCACTGATTGTAATTGTACTTTTAAGCTGCATAATAT TAATGATAAGACATTTTTTACTGAACATTCAATTAGGGATATGATGATTTGCTTTCTTTTCTATTTCTAACTATGGTGAT GAAACATAACGTTTTAGTTTAGGCTAGTTTCAACTATTCTTTTTTGTCTAGGCTAGGTTCTTTCTCTAAATTCTACTTTT GATAGATGGCAAATGAGAATGAAGGTGTTGGGTACAGGATGCAAAAAAGATATATGGCCTCCAAACATAGAATCCTACTT TATTGGTTTAATGGAGGAGGAAGTTAAGAAGGGTAATAGACAAACCACTACTCTAACAAGGGATGCATGGAGGCGTATCA AGGAGGAGATGAAAATCCAATTTGGCAAGGAATACACATATGATCAATTTAAGAACAAATTCAATCAACTAAGGGGAAAA TTGAAGGATTTTAATAATCTGTTGAAAATGGAGACTGGACTTGGATACAACTCAGCCACTGGCAAAATTATCGCCACGGA TGATGAGTGGAAGAAACTGTGTGAGGTATGTTCCAATTTGATATTTAGTTATTGTGATAAATTATTGTGTTATCATTTTA CAATATACTAATGAAGTGATTTTTTTTCTTTTTTAGAAGTACAAGTTTGCAAAGCAATTTAAGAAGAAGGGTTGCTTGAA TTATGAAAAATTGTGTGTCATTTATGGGGACACTACTGCTACTGGTGCAAATCAGCACCCTTCTACCAAAAGTCCTTCAA GTAGTAATGATGATGATAGTGAAGGAGACTTTGACAAAGATGAAGATGACCAACAACCTAAAAAGAAAGCACATGTTAGT AAGGACACTAGGAAAAGGAATGCAAGAGAGAATGCTCAAGTGGCATTTGCTAATGCTATGGCAATTTTTGGAGAACATAC TAAAAAGAAGATGGAGAGGATGGACAAGAGTCAGGTTGGACCATCAACTAATTCCACAGAAGCAGTTGGCCAGAGTAGTG AGCAAGATATGGAAAAAATAGTGACTTGTTTAAGGGTCCTTGAAGGACTTGAAGGCATTGATGGTGCTTCTTTTTCGAAG GCTTTGAAGTTATTGAAAGAAGATGCTATGTGGAGAACTTTGTTTATGGAACTAAGTGATGACCGGAAGAACGACTTTGT TCTGAATCTAGTTTAGTTTGTGATTCATTGTATTTTCTTTGCCTATGATCTTTGACATTTTGCATCTTTATGCTTTTCTT TTGATTTTGACATGTTGGATAATTGCTAGTACCTTTTGTGAACATGATGACATGGATTGTTAGAATTATTAATCTTATTT ATTCATGGTGTCACTTTTTAGTTTAGACAATTAATAATTTGTATTATTCATGATCTGTTATGAAAATATTGTTTACTTGC AGGATTGTGGTGATGGATGTGATAAATAAGAACTTTGTAGATGACTCTGATGATGATGAGGAAGAAGAGTTTCTAACTAT TGTTGGTTTTTATATCAGCATGGAAGATAATAGTTTGTTTAAATCAACACCCCAACCTCAAAGGATTTCAAAATTGAAAG GACATGCATGGGTAGTTGAAGTATTAACTGGTCATCCAAGGAATTGTTATGATACATTTCGAATGACACCACCTCAATTC ATTAAACTGTGTGATTTGTTGAAAGAAAGAAATAAATTGAAGGATACTAGGTTCTTAAGTGTTCAAGAGCAAGTTGCAAT ATTTCTACTCATTATCTGCCAAACAGTGCGAACTAGATTTGCAGCTGATCGATTTCAACACTCAGGGGACACTATTCATA GGCATTTCAAAAGAGTTCTAAAAGCCATTTGCTCTCTTTCCAAATACTTCATTGTTCCTCCTTCCTTTGATGAAGTTGCT CAAGAGATACGGTTCAATCCAAGATATTGTCCTTTTTTCAAGGTAATTATGCTAAATTATGTTTTAATGTTGTTTAAAAT TATGTATTAATATTTTTTTTTGTTTTATAAAGCATTGTGTAGGAGCAATTGATGGTACCCATATTTCAGCGTGCATTCCA AAAGATGAGCAGATTCCAGATCGTGGGAGAAAAATTGATCCGACTATCAATATGATGTGTTGTTACTCTTTTGATATGAA GTTCACATTTGTTATGGCTGGTTGGGAGGGTACAGCAAACGACTCAAGAATTTTTTTGGAAACTATTTATAAGGCTGAGA ATCGTTTTCCTTTTCCCCCGACAGGTAAATATTACATTGTAGACTCTGGATACGCCAATATGCCTGGGTTTCTCTCACCA TATCGTGGAGAACGATATCACTTGCGTGATTATAGAGGTCAACGAGCACCGCAAGGACCAAAGGAGCTATTCAACTACAT TCATTCTTCATTACGTAATGTGATTGAAAGGTGTTTTGGGGTCTTAAAAGCACGTTTTCCTATCTTGAAGTTCATGCTGC CATACGCATTGAAAAGACAAAAGTATATACCACTTGCATGTTGTGTTCTTCATAATTTTATTAAAATGGAGATGCAGGAC GATCCTTTATTTACACAATATGCAGATGAAAATGTTCAATTAGAAGATGAAGCGACAAATGGAAACAACAACACAGAGGA ACATGTGCCACCACAGGTGACTACAGCATCTTTTCGTCAAATGGCTACATTTCGAGATCGTTTGGCTCAACGATTATGGG ATGCAACTAATGCAACATTGTAGCTATATTGGAGTTAATTTGAAAAACTATGGCATTTCGTTAGCCTTATGTACTTTTCT CTTTCTTGGATCGTTAACAGTTTATGAATTTCTTTAAGTGTCATTACAATAATTTATCTATAAATTTGAAAAGCAAATGT GGTAAGAAATATTCTATGAGCAGCAGTGCTGCGGTGGCTCTCGTGTAGACTAGAAATATTGGTTGTGTTGTGATTTATGG GCATTCAGGGTAGTTGAATTTTCCCCATTAGGAGGAATTTGTATCCATATTATGTATGCCAATTACATAAAATCTTTGGT GTGTCCAATTATTTTATGATATCAGAAGTGAACTTCAGTATTGATATACACAAGTATTTGG
CDS sequence (LotjaGi2g1v0006200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGAAGTTAAGAAGGGTAATAGACAAACCACTACTCTAACAAGGGATGCATGGAGGCGTATCAAGGAGGAGAT GAAAATCCAATTTGGCAAGGAATACACATATGATCAATTTAAGAACAAATTCAATCAACTAAGGGGAAAATTGAAGGATT TTAATAATCTGTTGAAAATGGAGACTGGACTTGGATACAACTCAGCCACTGGCAAAATTATCGCCACGGATGATGAGTGG AAGAAACTGTGTGAGAAGTACAAGTTTGCAAAGCAATTTAAGAAGAAGGGTTGCTTGAATTATGAAAAATTGTGTGTCAT TTATGGGGACACTACTGCTACTGGTGCAAATCAGCACCCTTCTACCAAAAGTCCTTCAAGTAGTAATGATGATGATAGTG AAGGAGACTTTGACAAAGATGAAGATGACCAACAACCTAAAAAGAAAGCACATGTTAGTAAGGACACTAGGAAAAGGAAT GCAAGAGAGAATGCTCAAGTGGCATTTGCTAATGCTATGGCAATTTTTGGAGAACATACTAAAAAGAAGATGGAGAGGAT GGACAAGAGTCAGGTTGGACCATCAACTAATTCCACAGAAGCAGTTGGCCAGAGTAGTGAGCAAGATATGGAAAAAATAG TGACTTGTTTAAGGGTCCTTGAAGGACTTGAAGGCATTGATGGTGCTTCTTTTTCGAAGGCTTTGAAGTTATTGAAAGAA GATGCTATGTGGAGAACTTTGTTTATGGAACTAAGTGATGACCGGAAGAACGACTTTGTTCTGAATCTAGTTTAG
Protein sequence (LotjaGi2g1v0006200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEVKKGNRQTTTLTRDAWRRIKEEMKIQFGKEYTYDQFKNKFNQLRGKLKDFNNLLKMETGLGYNSATGKIIATDDEW KKLCEKYKFAKQFKKKGCLNYEKLCVIYGDTTATGANQHPSTKSPSSSNDDDSEGDFDKDEDDQQPKKKAHVSKDTRKRN ARENAQVAFANAMAIFGEHTKKKMERMDKSQVGPSTNSTEAVGQSSEQDMEKIVTCLRVLEGLEGIDGASFSKALKLLKE DAMWRTLFMELSDDRKNDFVLNLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 263 | 263 | 3.4E-54 | – | |
| PANTHER | 1 | 263 | 263 | 3.4E-54 | – | |
| Pfam | 1 | 82 | 82 | 9.5E-14 | ||
| Coils | 37 | 57 | 21 | - | – | |
| MobiDBLite | 114 | 164 | 51 | - | – | |
| MobiDBLite | 114 | 128 | 15 | - | – | |
| MobiDBLite | 140 | 162 | 23 | - | – | |
| MobiDBLite | 183 | 207 | 25 | - | – | |
| MobiDBLite | 190 | 207 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0006200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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