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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0009700 |
| Transcript ID | LotjaGi2g1v0009700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|I1ND23|I1ND23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0009700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:3390974..3394364) extracted from Lotus japonicus Gifu genome v1.2.
GGTGACTCGGGCGAGTGATGTTTAATTAGGTCAAGATGGTGGGTTTTGTTTAAGGTTTAAAAATTCTTGTTTGACTCAAA AGCTGAGAAGAGAGAGTGGAGAAGAAGGTGAACAACAACAACAACTAGATCTGATTCCTCCAAAGGTTTCAACTTTCAAT CAGTTTGAGTGATCTCAATCATGCTTTGAACCTTCTTGCTTTCAAGCACTTCCAGAATGTCACGCCCTTGTTTCCACAAG CTTGTTCTGCCCTCAACCCTTCAATCCAGACAACTGGTAACCCTAAAATCTCTCTCTTTCCTTTTTCACTCATTCAAGTT TTTCTCTTTTTTTGCTGTGAATTGGTTGCTGCAGTCATAATTTTTTGATTGGATTTTCTTGGGTTTGTGAGACTGGTAGG AACATGCTTTCTGGGTCTTTGCCATTTCTTCTTCAAAACCCTTAATCACAAACCCTAACACCAGTGTTGTTGGTGGGCAA AGTGGGGTGTTCTTGGATTTGCTGTTAAGATTCTTGATAAGGGCATGTGCTTTCTAGGAATTTCTGGGGTCCCACTAGAG TGTAGAGTGTTTCTTCAGTGAATTCAGAGTACTAATCCTCAACTCCCAGAGAACCTTGAAAGTTTCCTTCAGTATTAAGA TTTTATGATTTTCTCAATAGAAGTATCTGGGTGGTTGAGCTAATTATTAGTCCTAGAATTGAAATTGAGTTGGTTAGTTT ACCTCTTTCATTAGCAGTGTAAATACATTAGATGTAAACCTTGCAATTTTGTTTGCCACTTTGTTCCTAATTGATGAATC TCATCTAAAATTACTCTGTTAGTTTTTTGCTTGAAATTTTATACTGTTGGAGGGGAAATTCGTATCTACTATGTACTCTT TGAGTAACACACGAATCAGAACAGAACTTGTGGCACTGACTGAAATTGGATATGTTCTGTCATAGTGAATTCATGATAAA ATTTATGCTTTTGGGTGTATTACTCTTTGCAAATTGGAAAATTGTCTGTTATTTGTATTCACATAGCTGTTTGATTCTTA AGTTCTTCAAGGGAAGAAATTAGGGTTTTCCATTGCATGCTGATAATCTAGAAATAAATCTTTTTTTTTTGAAAAAAAAT AACATTGTCATAAAAGTTGGTGGTATTTTCATCTTCAGTCTTGTATTGGGAGCATTTACGAATATTTTGAAGCCAACTTG TATTTTTGAATTGCAGGGGATTCCGGACAATTTTCTGAGGAAATATGGCGGTCAGCTTTCAACAATTGCTACCCTCACTG TTCCAGATGGTACTGTTTGGCGTGTAGGGTTAAAGAAGGCCGACAACAGAATTTGGTTTGCTGATGGTTGGCAAGAATTT GTTCAACGCTACACCATTGGCATTGGATACTTTTTAGTATTCATGTATGAAGGGAATTCATCTTTCATTGTTCATATTTT CAATATGAGCACTTCTGAGGTGAATTATCAGTCTGCAGTGAGAAGCCGTAATGAAGGGCCTGTCTTTACGAATTATCATC ATATTTTTGTCGAAATGGAAGATACAGACTCCTTCGAATTCATGGATTCCTCTCCTTCAAACCTTACTCCTGGTTCATTG CAAAACAAGGTTTTTGGTGGATCTGTAGATCAACTGACACCTGGGAAGAATCAATCTCCTGCACTGCAGAATTTGTTTAA TGGTGGGTCTAAACTCAATCGTGTGAACTGGGGAGATAGTGGGAGTCCTTTTCCTTCAAAGGATGCCAATTCACAGGGCA ATCACTCAACCAGAGATATAGGTGTTCAGTTTAATGCTGTTGAATTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTAT CCTAACAATGAGGAAGGGGTTAGCAAAACTGTGAAAAGGAAGAGGAAGTCTGAACCAAGTAAGTTCTTTTAGCCAAGTTT ACTTTTTATGATCTGGTAATCGAAAAAATGAATTTTCTCATCAATGTAATTTGCAGAAACTGTAGATGGTCAGGAACCTT CTGCTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACCGTGACTGCG GAGGAAAGAGAGAGGGCAATTAATGATGCGAAAGCATTTGAACCAGCTAATCCTTTCTGTCGAGTTGTCCTTCGACCCTC CTATTTATATAGGGGATGCATAATGGTGAGTTGTTGAATTCAGTTTGATATTTATCTTTATTCTTTCTCAACATCAGGGT TTTAAATTGCGATCCACAGAGGCAATTGCGGCCGCAACATAACGGTTTTGCAGTCCCCAACGGCATCACAACTGCAATTG TGGCCGCTTCAATCTGCATTTGTTCGCCATTCCGCAATGTGACCGCAACTGCAATTTAAAACCCTGTTCAACATGTCATC TTGCATGCTAACACCTTCTGTTTTCCAGTATCTGCCTTCCTGCTTTGCAGAAAAGAATTTGAATGGGGTTTCGGGATTCA TCAAACTTCAGGTTGCCGATGGGAGACAGTGGCCAGTTCGCTGCCTATATAGAGGAGGTCGAGCAAAGTTAAGCCAGGGT TGGTTTGAATTCACCTTAGAGAACAATTTAGGGGAAGGGGATGTCTGTGTGTTTGAGCTGCTCAGAACGAGGGATGTAGT GCTGCAAGTTACTTTATTTCGTTTAACTGAAGAAGTGGGGTTGTTAGAGGCTCCTCCTATGCAGCAGCCCAGTCCAAATG TGAGCCACTCTAAACTGTTGAACCCTCACTTGCAGCATCGCGTCAGCACAACCAAAATGGTTAGAAATTAGCAGGGAGGG TTAACTCCTGATAGACAAACTGTGTCAAGTAGCTCTTGCTTGTGAGTGATCTTTTATTCATCTAATTTCTTCAGTTTGGA ACTTTGATGCTTTCCATGTCCATAGACATTTGAACTTAGTTATTGTAGTTTTGATATGGATATTGTTTTTGACTTGGGTT GTAAATAGAGTTTCAATCTAGTTAATCAAAACTGAGTTGAAACGCTTGTCATATTGCTGTTTATCTTGGGTTTAACTCTT TTTTTTCTTTTTCTGAAGTTATATTTGTTAATAGCTTCATCTGCATGAATATGATGGCTCATTCGTCTACTATGCGTTTC CATTGATATTGAAAATAAGTTTCGGCATTGGTTTTGGTCCCATCCCCGTAGTTTTAATGACATCTTTGTTCATAAACCCA ACATACCCTTTGTCAAAATAAAAATTTGTACGCACTTTTAAGTGAAAAATCATGACTTTCGCACTTATAGCTGAAAATTC ATCAGACAGAGAAAAATGTGTGTTTTGTACCTGCTATGGATATGGAAAAAAGACGATGTACCGAGCAAAAAGTGTTGAAA AACACCTAGAAAAGAGAAATTACGAACCCAA
CDS sequence (LotjaGi2g1v0009700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACGCCCTTGTTTCCACAAGCTTGTTCTGCCCTCAACCCTTCAATCCAGACAACTGGGGATTCCGGACAATTTTCT GAGGAAATATGGCGGTCAGCTTTCAACAATTGCTACCCTCACTGTTCCAGATGGTACTGTTTGGCGTGTAGGGTTAAAGA AGGCCGACAACAGAATTTGGTTTGCTGATGGTTGGCAAGAATTTGTTCAACGCTACACCATTGGCATTGGATACTTTTTA GTATTCATGTATGAAGGGAATTCATCTTTCATTGTTCATATTTTCAATATGAGCACTTCTGAGGTGAATTATCAGTCTGC AGTGAGAAGCCGTAATGAAGGGCCTGTCTTTACGAATTATCATCATATTTTTGTCGAAATGGAAGATACAGACTCCTTCG AATTCATGGATTCCTCTCCTTCAAACCTTACTCCTGGTTCATTGCAAAACAAGGTTTTTGGTGGATCTGTAGATCAACTG ACACCTGGGAAGAATCAATCTCCTGCACTGCAGAATTTGTTTAATGGTGGGTCTAAACTCAATCGTGTGAACTGGGGAGA TAGTGGGAGTCCTTTTCCTTCAAAGGATGCCAATTCACAGGGCAATCACTCAACCAGAGATATAGGTGTTCAGTTTAATG CTGTTGAATTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTATCCTAACAATGAGGAAGGGGTTAGCAAAACTGTGAAA AGGAAGAGGAAGTCTGAACCAAAAACTGTAGATGGTCAGGAACCTTCTGCTGAAAATGAAGAGGAGGCAGAAATGCGCTA TAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACCGTGACTGCGGAGGAAAGAGAGAGGGCAATTAATGATGCGAAAG CATTTGAACCAGCTAATCCTTTCTGTCGAGTTGTCCTTCGACCCTCCTATTTATATAGGGGATGCATAATGTATCTGCCT TCCTGCTTTGCAGAAAAGAATTTGAATGGGGTTTCGGGATTCATCAAACTTCAGGTTGCCGATGGGAGACAGTGGCCAGT TCGCTGCCTATATAGAGGAGGTCGAGCAAAGTTAAGCCAGGGTTGGTTTGAATTCACCTTAGAGAACAATTTAGGGGAAG GGGATGTCTGTGTGTTTGAGCTGCTCAGAACGAGGGATGTAGTGCTGCAAGTTACTTTATTTCGTTTAACTGAAGAAGTG GGGTTGTTAGAGGCTCCTCCTATGCAGCAGCCCAGTCCAAATGTGAGCCACTCTAAACTGTTGAACCCTCACTTGCAGCA TCGCGTCAGCACAACCAAAATGGTTAGAAATTAG
Protein sequence (LotjaGi2g1v0009700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPCFHKLVLPSTLQSRQLGIPDNFLRKYGGQLSTIATLTVPDGTVWRVGLKKADNRIWFADGWQEFVQRYTIGIGYFL VFMYEGNSSFIVHIFNMSTSEVNYQSAVRSRNEGPVFTNYHHIFVEMEDTDSFEFMDSSPSNLTPGSLQNKVFGGSVDQL TPGKNQSPALQNLFNGGSKLNRVNWGDSGSPFPSKDANSQGNHSTRDIGVQFNAVEFKRSTEELKLRYPNNEEGVSKTVK RKRKSEPKTVDGQEPSAENEEEAEMRYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIMYLP SCFAEKNLNGVSGFIKLQVADGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRTRDVVLQVTLFRLTEEV GLLEAPPMQQPSPNVSHSKLLNPHLQHRVSTTKMVRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 99 | 99 | 3.1E-25 | ||
| SUPERFAMILY | 2 | 97 | 96 | 2.16E-24 | ||
| PANTHER | 2 | 413 | 412 | 2.0E-218 | – | |
| PANTHER | 2 | 413 | 412 | 2.0E-218 | – | |
| CDD | 4 | 96 | 93 | 4.54022E-20 | ||
| ProSiteProfiles | 5 | 98 | 94 | 13.422 | ||
| SMART | 6 | 98 | 93 | 9.3E-19 | ||
| Pfam | 7 | 96 | 90 | 4.7E-17 | ||
| MobiDBLite | 184 | 206 | 23 | - | – | |
| MobiDBLite | 228 | 262 | 35 | - | – | |
| Gene3D | 279 | 399 | 121 | 4.4E-35 | ||
| SUPERFAMILY | 295 | 396 | 102 | 8.83E-24 | ||
| CDD | 300 | 395 | 96 | 1.77191E-22 | ||
| ProSiteProfiles | 302 | 397 | 96 | 13.93 | ||
| SMART | 302 | 397 | 96 | 8.2E-19 | ||
| Pfam | 305 | 395 | 91 | 3.6E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0009700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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