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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0009700 |
| Transcript ID | LotjaGi2g1v0009700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A0R0EGV4|A0A0R0EGV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0009700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:3392133..3393764) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTATTGGGAGCATTTACGAATATTTTGAAGCCAACTTGTATTTTTGAATTGCAGGGGATTCCGGACAATTTTCTGAG GAAATATGGCGGTCAGCTTTCAACAATTGCTACCCTCACTGTTCCAGATGGTACTGTTTGGCGTGTAGGGTTAAAGAAGG CCGACAACAGAATTTGGTTTGCTGATGGTTGGCAAGAATTTGTTCAACGCTACACCATTGGCATTGGATACTTTTTAGTA TTCATGTATGAAGGGAATTCATCTTTCATTGTTCATATTTTCAATATGAGCACTTCTGAGGTGAATTATCAGTCTGCAGT GAGAAGCCGTAATGAAGGGCCTGTCTTTACGAATTATCATCATATTTTTGTCGAAATGGAAGATACAGACTCCTTCGAAT TCATGGATTCCTCTCCTTCAAACCTTACTCCTGGTTCATTGCAAAACAAGGTTTTTGGTGGATCTGTAGATCAACTGACA CCTGGGAAGAATCAATCTCCTGCACTGCAGAATTTGTTTAATGGTGGGTCTAAACTCAATCGTGTGAACTGGGGAGATAG TGGGAGTCCTTTTCCTTCAAAGGATGCCAATTCACAGGGCAATCACTCAACCAGAGATATAGGTGTTCAGTTTAATGCTG TTGAATTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTATCCTAACAATGAGGAAGGGGTTAGCAAAACTGTGAAAAGG AAGAGGAAGTCTGAACCAAGTAAGTTCTTTTAGCCAAGTTTACTTTTTATGATCTGGTAATCGAAAAAATGAATTTTCTC ATCAATGTAATTTGCAGAAACTGTAGATGGTCAGGAACCTTCTGCTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGAT TTTATGAAAGTGCTTCTGCTAGAAAGAGAACCGTGACTGCGGAGGAAAGAGAGAGGGCAATTAATGATGCGAAAGCATTT GAACCAGCTAATCCTTTCTGTCGAGTTGTCCTTCGACCCTCCTATTTATATAGGGGATGCATAATGGTGAGTTGTTGAAT TCAGTTTGATATTTATCTTTATTCTTTCTCAACATCAGGGTTTTAAATTGCGATCCACAGAGGCAATTGCGGCCGCAACA TAACGGTTTTGCAGTCCCCAACGGCATCACAACTGCAATTGTGGCCGCTTCAATCTGCATTTGTTCGCCATTCCGCAATG TGACCGCAACTGCAATTTAAAACCCTGTTCAACATGTCATCTTGCATGCTAACACCTTCTGTTTTCCAGTATCTGCCTTC CTGCTTTGCAGAAAAGAATTTGAATGGGGTTTCGGGATTCATCAAACTTCAGGTTGCCGATGGGAGACAGTGGCCAGTTC GCTGCCTATATAGAGGAGGTCGAGCAAAGTTAAGCCAGGGTTGGTTTGAATTCACCTTAGAGAACAATTTAGGGGAAGGG GATGTCTGTGTGTTTGAGCTGCTCAGAACGAGGGATGTAGTGCTGCAAGTTACTTTATTTCGTTTAACTGAAGAAGTGGG GTTGTTAGAGGCTCCTCCTATGCAGCAGCCCAGTCCAAATGTGAGCCACTCTAAACTGTTGAACCCTCACTTGCAGCATC GCGTCAGCACAACCAAAATGGTTAGAAATTAG
CDS sequence (LotjaGi2g1v0009700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGAAGGGAATTCATCTTTCATTGTTCATATTTTCAATATGAGCACTTCTGAGGTGAATTATCAGTCTGCAGTGAG AAGCCGTAATGAAGGGCCTGTCTTTACGAATTATCATCATATTTTTGTCGAAATGGAAGATACAGACTCCTTCGAATTCA TGGATTCCTCTCCTTCAAACCTTACTCCTGGTTCATTGCAAAACAAGGTTTTTGGTGGATCTGTAGATCAACTGACACCT GGGAAGAATCAATCTCCTGCACTGCAGAATTTGTTTAATGGTGGGTCTAAACTCAATCGTGTGAACTGGGGAGATAGTGG GAGTCCTTTTCCTTCAAAGGATGCCAATTCACAGGGCAATCACTCAACCAGAGATATAGGTGTTCAGTTTAATGCTGTTG AATTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTATCCTAACAATGAGGAAGGGGTTAGCAAAACTGTGAAAAGGAAG AGGAAGTCTGAACCAAATGGTCAGGAACCTTCTGCTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGATTTTATGAAAG TGCTTCTGCTAGAAAGAGAACCGTGACTGCGGAGGAAAGAGAGAGGGCAATTAATGATGCGAAAGCATTTGAACCAGCTA ATCCTTTCTGTCGAGTTGTCCTTCGACCCTCCTATTTATATAGGGGATGCATAATGTATCTGCCTTCCTGCTTTGCAGAA AAGAATTTGAATGGGGTTTCGGGATTCATCAAACTTCAGGTTGCCGATGGGAGACAGTGGCCAGTTCGCTGCCTATATAG AGGAGGTCGAGCAAAGTTAAGCCAGGGTTGGTTTGAATTCACCTTAGAGAACAATTTAGGGGAAGGGGATGTCTGTGTGT TTGAGCTGCTCAGAACGAGGGATGTAGTGCTGCAAGTTACTTTATTTCGTTTAACTGAAGAAGTGGGGTTGTTAGAGGCT CCTCCTATGCAGCAGCCCAGTCCAAATGTGAGCCACTCTAAACTGTTGAACCCTCACTTGCAGCATCGCGTCAGCACAAC CAAAATGGTTAGAAATTAG
Protein sequence (LotjaGi2g1v0009700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYEGNSSFIVHIFNMSTSEVNYQSAVRSRNEGPVFTNYHHIFVEMEDTDSFEFMDSSPSNLTPGSLQNKVFGGSVDQLTP GKNQSPALQNLFNGGSKLNRVNWGDSGSPFPSKDANSQGNHSTRDIGVQFNAVEFKRSTEELKLRYPNNEEGVSKTVKRK RKSEPNGQEPSAENEEEAEMRYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAE KNLNGVSGFIKLQVADGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRTRDVVLQVTLFRLTEEVGLLEA PPMQQPSPNVSHSKLLNPHLQHRVSTTKMVRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 328 | 328 | 4.0E-163 | – | |
| PANTHER | 1 | 328 | 328 | 4.0E-163 | – | |
| MobiDBLite | 100 | 127 | 28 | - | – | |
| MobiDBLite | 146 | 178 | 33 | - | – | |
| Gene3D | 194 | 314 | 121 | 2.9E-35 | ||
| SUPERFAMILY | 210 | 311 | 102 | 5.89E-24 | ||
| CDD | 215 | 310 | 96 | 2.41845E-23 | ||
| ProSiteProfiles | 217 | 312 | 96 | 13.93 | ||
| SMART | 217 | 312 | 96 | 8.2E-19 | ||
| Pfam | 220 | 310 | 91 | 2.5E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0009700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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