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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0011200 |
| Transcript ID | LotjaGi2g1v0011200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PPPDE thiol peptidase family protein, putative; TAIR: AT1G47740.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|A0A0L9UUB3|A0A0L9UUB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0011200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:4136473..4138313) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAATCAGGATTTAAAAGTGGCTGGTCCTCAGTTGTGCGTCTTCGTCTCAAAGACAAATCAGTCACCCCCTTTTGCGT ATTCTCTAAAGTGAAATCAGCTGGTGACAAACCTGGGAATACACCTGTCTATCTCAATGTATATGATTTGACAACAGTAA ATGGCTATATGTATTGGGCAGGCCTTGGTATTTTCCACTCTGGGGTGGAAGGTCAGTAAATAGTATAGTCCTTTTCAAAT ATATTCAAATCATTTTATTTTTTTGAAACAAAACTATGTGCCTGAAGTTTTGATCCAAGTACTATACTCCACAGGCAGGG AAATGTTTGGTTGTCGTTTTATGCTTTTGTATTTCATCCCTCAATATTTTAGTGAGATGGAATATCTAAGGATATACCTT CACATTTTAGTGAGATTTATATTAATGATTGATCACATTTAGAAGCAACGGCTAAACTGATATACCTTCATATTTTAGAG AGATTGAATATCTATGCATCTGCCTGTCACTTGTTTTTGCGAGGATTACTTTCCTTTTTGCTTTATGTGGAGAAAAAAAT TACTCAGTATTTCATGAATATTTGCTAAAATGGAGTTACTGTGCTGACAGTTTATGGAGTAGAATATGCATTTGGAGCCC ATGACTATCCAACAAGTGGTGTCTTTGAGGTTGAACCTCGGCAGTGTCCTGGCTTTAAGTTTAGGAAGTCAATATTCATG GGAACTACTAGCTTAGATCCTTTCCAGATTAGAGAGTTCATGGAGCGCCTGTCTGCAGATTATTATGGTGATAGTTATCA CTTGATTGTGAAGAATTGCAATCACTTTTGTGATGATATCTGTTACAAGCTGACAGGGAATTCGATACCAAAATGGGTTA ATCGTCTCGCAAGAATGGGTATATGATGTCTTTTAAAACTCCAAATCCATTCTTTCATTATAGATTGCATCATTTTTGAG TCAGTAAGCAATGCAAATGCATCAGAACTCAGTTCTATATGAACATTTGAAACCTCAAAATGCGTTTAACTTGTGGTTTC ACAGCTTGGAAGAAAGTATCGTTCAATTATTTCATGCCATGCACAGATAGTCCTTCATGAAAAATGTAAAAGATGGCAAC AATGCAATATCTGTCATCAATTGCAGGCTCATTTTTAAGGCTATGGTTGTTTGAGTATATGAAAAATTTGGAGTGAGAAA TACTTTATAGCTTGGTTCAACAGAAATGTTGGATAATTTCATGTGAAGTGAAACAACTTTGCCTTCCACCCCACAAAATT TGTGCACGAAGCTAGTTGACAGTGATTTTCCACCCTCTACCAAGCAACTAGTGAAATTAAAACCTTTCCATCCCATTTAC TTTCCTTCCCCTTATTGGCTACCTACATACTTAAACATGCATAGCCTTACAATGGTTGACTAGATGATTTCTGCTTAAAA TATATTAATATCATGGCTTAAATAAGTTTTTAGTCCCCTATTTTATAGCCAAATTTGGTTTTAGTTACTTCATCTAATTT TTGTAGTCAACTGTTTCCCCAAACCCACTCAAAATTCTTAGTCATGCTTGACTAACTTATCGTTTTTTGTTTGTAGGTTC CTATTGCAATTGCGTACTCCCTGATGCCCTTAAAACTACCACTGTTCAGAATGATCCCGACTTTCAAGGGTGTGATAGTG AAAAAAGGAGGCTACGAACTGCCTTCAGTTGCTTGTCATCAATCTCAATGCCCCATAAGGAAGTATCAATGTCTTCCTTA TTTTTGCACTCTCACTATAAAGGTTGCCTACCGCCGTGGGAGTTGAAGAAATCTAAAAAGGGCTCACTAAAGCAAAAATG A
CDS sequence (LotjaGi2g1v0011200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCAGGATTTAAAAGTGGCTGGTCCTCAGTTGTGCGTCTTCGTCTCAAAGACAAATCAGTCACCCCCTTTTGCGT ATTCTCTAAAGTGAAATCAGCTGGTGACAAACCTGGGAATACACCTGTCTATCTCAATGTATATGATTTGACAACAGTAA ATGGCTATATGTATTGGGCAGGCCTTGGTATTTTCCACTCTGGGGTGGAAGTTTATGGAGTAGAATATGCATTTGGAGCC CATGACTATCCAACAAGTGGTGTCTTTGAGGTTGAACCTCGGCAGTGTCCTGGCTTTAAGTTTAGGAAGTCAATATTCAT GGGAACTACTAGCTTAGATCCTTTCCAGATTAGAGAGTTCATGGAGCGCCTGTCTGCAGATTATTATGGTGATAGTTATC ACTTGATTGTGAAGAATTGCAATCACTTTTGTGATGATATCTGTTACAAGCTGACAGGGAATTCGATACCAAAATGGGTT AATCGTCTCGCAAGAATGGGTTCCTATTGCAATTGCGTACTCCCTGATGCCCTTAAAACTACCACTGTTCAGAATGATCC CGACTTTCAAGGGTGTGATAGTGAAAAAAGGAGGCTACGAACTGCCTTCAGTTGCTTGTCATCAATCTCAATGCCCCATA AGGAAGTATCAATGTCTTCCTTATTTTTGCACTCTCACTATAAAGGTTGCCTACCGCCGTGGGAGTTGAAGAAATCTAAA AAGGGCTCACTAAAGCAAAAATGA
Protein sequence (LotjaGi2g1v0011200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSGFKSGWSSVVRLRLKDKSVTPFCVFSKVKSAGDKPGNTPVYLNVYDLTTVNGYMYWAGLGIFHSGVEVYGVEYAFGA HDYPTSGVFEVEPRQCPGFKFRKSIFMGTTSLDPFQIREFMERLSADYYGDSYHLIVKNCNHFCDDICYKLTGNSIPKWV NRLARMGSYCNCVLPDALKTTTVQNDPDFQGCDSEKRRLRTAFSCLSSISMPHKEVSMSSLFLHSHYKGCLPPWELKKSK KGSLKQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 242 | 230 | 5.2E-135 | – | |
| PANTHER | 13 | 242 | 230 | 5.2E-135 | ||
| Gene3D | 36 | 190 | 155 | 1.6E-35 | ||
| ProSiteProfiles | 41 | 178 | 138 | 59.701 | – | |
| SMART | 41 | 179 | 139 | 5.3E-57 | ||
| Pfam | 42 | 176 | 135 | 5.8E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0011200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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