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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0014300 |
| Transcript ID | LotjaGi2g1v0014300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.2 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7IAW3|G7IAW3_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi2g1v0014300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:5156883..5160922) extracted from Lotus japonicus Gifu genome v1.2.
TCATCTCATTTTCTGAAAGTGAAAGGGCAGAGAAGAGACTCAGAGAGAGAGCTTAATTTTTCCAACACCCATGACTCGCA ACAAGAACTCTGCAATCTGTTTCTTTAAGATCATCACAACATACATGCATTGAAGCTGGAAAACTTGTAAGCCTACTTTT CTTCATCTCTTCTTTATTTTTGTGGATTTTCTTTTGAAATTTTTACTGTCACAGGCACAGTAGTACACACTACATGCCAA TGCCAGTGCCAGTGCCATGGAGATTAGTTTTTTACCTTTCCTATGTCTTCTTGATGTACCTTGTCTTTTTGCAACATAGA AGACCAATAGTTTGTCATCATAAGTGGCCCTAAATTTGAACAAAGTTCCTCCCTTTCATGCATTTGGATTTTGGACTGAT TAGGAAATAGCAGGAAATCATTGTTATCATTGATCTAAAAAAAGAAATGTAAGCTTTCTGTTATTATTGTGAATTTCATT TTGCATGCTTACAGTATGTTCTGTGCAGAAGCTCCCAAATGGTTTCATTAAGAAATACAGTGGTGATATGCCAAACCCAG TAATTCTCAAGCCCCCTGATAACACTAGTTGGGAGATACATTGGAGTAAACATGATTCTGATATTTGGTTTCAAAAGGGT TGGGAAGAATTTGCGAAATATTACTCCCTCTACCATGGGCACTTGGTTTTGTTTGAATTCAAGGATGCTTCTCATTTTGG GGTGCATATATTTGACAAGAGCACCCTTGAAATAGAATATCCTATGATCTATGACAATCAAGATGAAGAGAACAACAACC CTGATCAGATGAGTGACAACTCAGTTGAGATTTTGTATGAGATACCTTCTTGGAAGAAGACTAAACTGAAATCACCCATT GCATGTCCTCAACCAAGTAAGAAATTGAGAACCAGGACAAGCAAAGATGTTGGAAGAAGCCCTAAATTGCAAAACTTGTC TAAACAAGTCCAAACTATTGAAGGTATTCAGTCTCATGTTACAAACTTGGAGAAGTCAACATTGGAACCTGTCCATAACG AATTGGAGGGTATGTGCTTTATTGTTGGACTATCCTCTTCACTTCACACATCAGATTGTGATTTTAAGGCCATAATTTTG TAACATAACTTTTTTGCTCAATGTTTCAGATGGTGCAGGTGGAAGCACTGAATGTCTTAAAAGGGATCACTTAACTTCTA AAACCACTAAAGCTTTGAACCAAGCCAGAACCTTCAAATCTAAAAATCCGTCCTTCGTGAGTGTCATGAAACCTGCCTAT ATTTATCGACATTCCTTGGTGAGAATTTTGTTTAGCCTTATTTTTATCCGTTAAGTTAGTTTTGTATGGTGCAGAACAGC AGAAGTTTAACTTGTTAGATTTTATGGCTTGTATAAAAAAAATCCAGCATGTCTCATCACAATTTGCAAAAAACTATTTG AAGAAGAAGAGGGATATCATTCTTCAGGTCTTGGATGGAAGAACTTGGACTGTTAGTTATAAACTCGGCAAATTCACTGC TGGATGGAAGAAGTTTGCATCAGATAATAAATTGAAGGTTGGGGACGTTTGCCGTTTTGAGCTGAACAAGAGGGGAAGCC TTTCATTGAAAGCATTGATCTTTCCACTTGCAAGAGAACCTCATTCCCCTCAATCACAAGGTAATCCAAGTTGTTTTTTG ATTCAAAGTTTTATTCTATTTGATCATCATAGTAACGGTTGTAATTTTTCTTCCTTGAAATCAGTTCAAGGAGATGGAGC CAATTGGAGAGTCCAGGACACTAAAAGTAAAACTGTTACTACTACCAGTAGAGGTAAATCTTAGAGGTCAATGTTCTGTG ACTAATTGATAGTAATTTTCTTGTTACTCCCAAATAAAGTCTAATGTTGAATAAAGTAAAAAAGAAAACATAGATGATTC AATATTGAGCAGAGCAGCAGAGTGCATCATCCTTAAACTATATGATTATTTTCTTACCATGCATACAGGTGGGAAGGCAA CTCAACAAGATTCAATGTTGATTAATCCCTTAACAAATGGAGCTCTGGATGAAGCTAACAAATTTACTTCAGAAAATCCC TGCTTCAAAGTCACAATACAACCTGATCGTGCGGGGAATTATTACAGACCGGTAAGGTTTATAAATTAAGCAGCACATCG AAAGAGGTGTGGTAAGACCTCTCATTAGTCTCCTAGTAGTACCTTCCATTAAAATTCATATATCTGCATAGGGGTGGTCT CATTTTTCTGGGTCAATTTTGAAATGGTCCCTCCATCCAAAATAAAAGGCATACTATTACTTTGTAGTTAGCTCCTCTGA AAGGATGTAGTTGGTTCAAAGGGTAAAAGAAGTGATCACAATGGTTGACTGAGAAACTGTTGAAGTTTAAAAAAGTGTAT GATCATAACCTAAACCGTTAACTTCTTAGTCAACAGTTGTAATTACTTACTTTACCTCTTTTGAAGTGATCCTCTCACTT TATATAGATGAACTAAATCGTGTTACTTTATGTCACACAAGCAGTTAATCTGCAGTTATTGTACTTCCATTAATTGTCAG GCTATAATCTCATGGTGGTAAAAATATTACTTGATGCAGCACGTAACTCTTACCTTCATGAAAAAGTACTTAAATAAAAA GAAGAATGTGATGTTACAGTTTGGGAACAATTTGTGGCCTGTGAAGTTGCTCCATTCAGCCTCATATGGAGCCAAGTTGT CCAAAGGTTGGGCCCTATTTGCAGGAGAAAGTAAATTGGTAGCTGGAGATGTTTGTGTCTTTGAGCTCATCAACAAAGAA GATGCTGTGTTTGATGTTCATATTTTCAAAGGTCACTGTTCATATTTTACTCATGTGAAATGCAATGAGTAAAATGCACC TTTTATTTTCATTATCAAATATCAATCTATCCTTAAATAGTTAAATGCAAATCTGGAACATTGTTGTCTACTGTACCATA CCAAACTTTGCTTAATATGCAGGTTCCTTTGCTATTTTGTATTTGGTCATAGTCTGGGGGTCTTAGGTACTGCAGGATCT CTTTGCATAATCTCCAAAATATGTTGTCACAATTGAAGTTCTTATTGAAGGGTCATCTACTAAACTTTTGAAGTTCTTGA AAGAACTCTCTTTTTGAAGTTTTTGAAAGTAGCAATGTCATAAGCTGGGATTATTTTGTAGCCAAGATGTGTTTGAAATA TGAAACTCATAAGGACAATTGCAATTATAACAGAGGTTCTGAAATTTAAATGGGACAACAGTTTTTGTCAAGCCACAGTG CTATTCAATCAAAATCCCAATCACATCCTATCTAAAATTAAATTGTCAGATTAACCATGAATTTTAACCTAAAAGAAATA AAAACAACAAAGATTGAAAGAGATAATTTCACGAATAATGTTGCTTTCACACCCTTCTTTGCGGTGGAAAGAGGTGGAAG GTGTAACACCCTCTAAACCCTGCGTAATTTTTATAACATAAATCAGAGTAAAATGCATAACACGAGGGTGTCACACTTAT TCTCCAAAACCATAAATCAAAACACCTGTCATGGCCAACATGGGTTGGCACAACTGACTTCAGGTTCCGGGTTTAGTTCT CACCTCCCAAAGGTCGAGGGTTTGAATCCCCCTGGGGTCAGTAAAATCCCAGTTGGTGGGCAACCCTCCTCGGGGAGATC CCCCGGCGCTCCTTCTAGAAGTGGGCCTCTGCTGGCCTCCCCAGCATGCCATTGGCGCCCTGCCCGGTAGTCTGGAGGTG CTTTCTCTCCGTTCTACCATTCTTTGTAACAAAAAAAAAACACCTGTCATGCTCATAATAAATATATAAATTTTCCAACT TTAATGTCACAACTTCATATGCATAACACAACAGATTTATTTTCAACTCCAAGATAAAACATAACCAAAAAATAAATAAG AGAGTTCATAAAATAACTCTTAACATCAAGGTACAAAACTAAGCGTTTCCCTGGTGTTACATAACAGAGCATGACTCCCC TAACTAAACCATAAATGAAATACTAGCTCATCCAACTAAC
CDS sequence (LotjaGi2g1v0014300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAAACCCAGTAATTCTCAAGCCCCCTGATAACACTAGTTGGGAGATACATTGGAGTAAACATGATTCTGATATTTG GTTTCAAAAGGGTTGGGAAGAATTTGCGAAATATTACTCCCTCTACCATGGGCACTTGGTTTTGTTTGAATTCAAGGATG CTTCTCATTTTGGGGTGCATATATTTGACAAGAGCACCCTTGAAATAGAATATCCTATGATCTATGACAATCAAGATGAA GAGAACAACAACCCTGATCAGATGAGTGACAACTCAGTTGAGATTTTGTATGAGATACCTTCTTGGAAGAAGACTAAACT GAAATCACCCATTGCATGTCCTCAACCAAGTAAGAAATTGAGAACCAGGACAAGCAAAGATGTTGGAAGAAGCCCTAAAT TGCAAAACTTGTCTAAACAAGTCCAAACTATTGAAGGTATTCAGTCTCATGTTACAAACTTGGAGAAGTCAACATTGGAA CCTGTCCATAACGAATTGGAGGATGGTGCAGGTGGAAGCACTGAATGTCTTAAAAGGGATCACTTAACTTCTAAAACCAC TAAAGCTTTGAACCAAGCCAGAACCTTCAAATCTAAAAATCCGTCCTTCGTGAGTGTCATGAAACCTGCCTATATTTATC GACATTCCTTGCATGTCTCATCACAATTTGCAAAAAACTATTTGAAGAAGAAGAGGGATATCATTCTTCAGGTCTTGGAT GGAAGAACTTGGACTGTTAGTTATAAACTCGGCAAATTCACTGCTGGATGGAAGAAGTTTGCATCAGATAATAAATTGAA GGTTGGGGACGTTTGCCGTTTTGAGCTGAACAAGAGGGGAAGCCTTTCATTGAAAGCATTGATCTTTCCACTTGCAAGAG AACCTCATTCCCCTCAATCACAAGTTCAAGGAGATGGAGCCAATTGGAGAGTCCAGGACACTAAAAGTAAAACTGTTACT ACTACCAGTAGAGGTGGGAAGGCAACTCAACAAGATTCAATGTTGATTAATCCCTTAACAAATGGAGCTCTGGATGAAGC TAACAAATTTACTTCAGAAAATCCCTGCTTCAAAGTCACAATACAACCTGATCGTGCGGGGAATTATTACAGACCGCACG TAACTCTTACCTTCATGAAAAAGTACTTAAATAAAAAGAAGAATGTGATGTTACAGTTTGGGAACAATTTGTGGCCTGTG AAGTTGCTCCATTCAGCCTCATATGGAGCCAAGTTGTCCAAAGGTTGGGCCCTATTTGCAGGAGAAAGTAAATTGGTAGC TGGAGATGTTTGTGTCTTTGAGCTCATCAACAAAGAAGATGCTGTGTTTGATGTTCATATTTTCAAAGGTCACTGTTCAT ATTTTACTCATGTGAAATGCAATGAGTAA
Protein sequence (LotjaGi2g1v0014300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNPVILKPPDNTSWEIHWSKHDSDIWFQKGWEEFAKYYSLYHGHLVLFEFKDASHFGVHIFDKSTLEIEYPMIYDNQDE ENNNPDQMSDNSVEILYEIPSWKKTKLKSPIACPQPSKKLRTRTSKDVGRSPKLQNLSKQVQTIEGIQSHVTNLEKSTLE PVHNELEDGAGGSTECLKRDHLTSKTTKALNQARTFKSKNPSFVSVMKPAYIYRHSLHVSSQFAKNYLKKKRDIILQVLD GRTWTVSYKLGKFTAGWKKFASDNKLKVGDVCRFELNKRGSLSLKALIFPLAREPHSPQSQVQGDGANWRVQDTKSKTVT TTSRGGKATQQDSMLINPLTNGALDEANKFTSENPCFKVTIQPDRAGNYYRPHVTLTFMKKYLNKKKNVMLQFGNNLWPV KLLHSASYGAKLSKGWALFAGESKLVAGDVCVFELINKEDAVFDVHIFKGHCSYFTHVKCNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 293 | 293 | 1.9E-79 | – | |
| PANTHER | 1 | 293 | 293 | 1.9E-79 | – | |
| ProSiteProfiles | 1 | 65 | 65 | 12.182 | ||
| Gene3D | 1 | 66 | 66 | 1.1E-14 | ||
| CDD | 2 | 63 | 62 | 4.88893E-9 | ||
| SUPERFAMILY | 3 | 65 | 63 | 1.24E-12 | ||
| Gene3D | 182 | 291 | 110 | 2.2E-28 | ||
| SUPERFAMILY | 196 | 282 | 87 | 3.34E-19 | ||
| CDD | 201 | 290 | 90 | 1.78054E-20 | ||
| ProSiteProfiles | 202 | 292 | 91 | 11.603 | ||
| Pfam | 203 | 289 | 87 | 2.3E-15 | ||
| SMART | 203 | 292 | 90 | 2.2E-18 | ||
| PANTHER | 327 | 452 | 126 | 1.9E-79 | – | |
| PANTHER | 327 | 452 | 126 | 1.9E-79 | – | |
| Gene3D | 339 | 451 | 113 | 1.9E-27 | ||
| SUPERFAMILY | 350 | 449 | 100 | 9.61E-15 | ||
| CDD | 355 | 449 | 95 | 2.38807E-14 | ||
| SMART | 356 | 451 | 96 | 4.7E-6 | ||
| Pfam | 371 | 449 | 79 | 8.5E-9 | ||
| ProSiteProfiles | 398 | 451 | 54 | 10.433 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0014300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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