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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0015800 |
| Transcript ID | LotjaGi2g1v0015800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7L911|G7L911_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi2g1v0015800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:5590837..5593848) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTCATCAATGTTCGATAAAAAGCAAAATGAGTAAGATACTACCTCAATTCTCAATCATCTCATTTTCTTAGTCACA GAATCACTCAGTCCCAGCATCCATGACTTGCAACAAGCGAGACAAGCATTCTGCAATTCGTTTCTTTAAGATTATCACAA CAAGAAGTCTTGAAGCTGGAAAACTTGTAAGTATTCGTTCCTTCATCTCCTATTTTTCTCATTCTTTTCATTTAATTTTT ATCTTCTTTCGGATTTTAAGTAAGGTAGAAACTGCTGTCACAGTACCTTATGCTACCAAGGCATACACATGCATGATAAA TTTTTACCTTTCCCAATTCTACTTAGTATATGTGATGTGTGAAATTCTGTTTTTTACTGCAAAGTTGGGTCCTCTAATGA GTGATTATATGATATAAAACCAATTGTTTGCAAGAAGCACTTCTGGGTCATCATGCATGGCCCAAGTATCCACAAAGTTC CTCTCTTTCATGCATTTGGAGTGATCAAGAAATAGAACAGAATCATTACTAGTACAATTGATTAAAAAAGTTAAAATTTC TCTGATATATGCTTGTGAATTTCATCATGCATGCTAACATAAATTTCTTTGCAGATGCTTCCAAATGGTTTCACTAGGGA ACATGGTGGTGATGTGTCAAACCCAGTGTTTCTCAAGCCTCCAGATGACAAAGACTGGAAGATACATTGGACTAAACATG AAGATGGCTATATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTTCATACTACTCCCTTGATCATGGGTACTTGCTGTTG TTTGAATACAACAAACATTCTGATTTTGGGGTACACATATTTGACAAGAGTACCCTTGAAATAGAATACCCTTTCCAAGG CTATAAGGATGAACCCGACAATCTTGGTCAAATTAATGCTGATTTAGTTCAGAGTTTGGATGAGAGAACTTCATGCAAGA AGAGAAAACTGAAATCTCCAATGTCAAGTTCTCAACCAAGTAAGAAATTGAGACCTAGCACAAGTGGAGATGTTGGAAGA AGATCCAAATCGCCAAAGTTGCCTCAGCATGTTAAAGGTCATCATCAGTCTCAAGGGACCGAATTTGAGGAATTGGATGG TATGTATTTCATGATTGAATTATCTTCTCACTTCATGATTGCATTGAGATTACATTTTCATAACATACCCATGTAATGTT GTTCAAATTTTCAGAGAATGTGAGTGGTGACTCCCTTGAATGCCTAAAATGGAAGGAGTTAACTTCTAAAATTACTAAGG CTTCAAACAGAGCCAGAACCATCACATCTAAAAACCCCTCTTTCAAAGTTGTCATCAAACCTGCCTATGCCAATAAATAC ATAGTGAGCTTTTGATTAGCTTCAGTTTTGTCCACAGTGATTTTTTTGTATCTTGTGTTGGAAGCAGAAATTTAACTTGT TTATTGTCACTTGTTAAATTTTCCAACTTGTCATGAAAATCCAGCGAGTTACATCAGAATTTGCAGAAAAGCATTTGAAG AACAAGCGAGGTGAGATCATCCTTCATGTCAAGGATGGGAGAACATGGCCTGTTAAATATGTTCTTGAAAAAGGGACAAT CAGTGCTGGATGGAAGAAATTTGTATCAGACAATAACTTGAAAGTTGGGGATGTTTGTGTTTTTGAATTGACCAAGAGTC AACCTCTTTCTTTGAAGGTATCAATCTTTCCACCTGGGGGAGAATCAGATCAACCTCATTCCCCTCCATCACTAGGTAAT TTATGCAAGTTAGAATTTCATAAAGTATTATTATTCTTTGATCATAATGGTAAAGATTGTAGTTTTGTTCCTTAGATTCT GTTCATGGAAATGGAGTTAATGGCTTAGACCCTGCAAGAATTATAGATGTAGAAAATGAAACTACTATTACTAGGAAAGG TGAAATCTTAAACAGCTATGTTGTTTGTTGAGTAAGTAGTTTCTAAGTTATGCTGAGTGCATTCTAAACCATGTAGTTTT GTTTCCATATCACAGGTAGGAAGGCAACTCAGAAAAGAGCTGATGCATTCACCCCAAAAAACCCCTATTTCACAGCCAAT ATAAAGCCAAACAAGTGGGGGGATTACAGACAGGTAATGTATATTATTTAGCAGCAAATAAAGGAGGTGATAATGAATCC TCTCAAGTCAAAAGATATTAATATTGTCACATTAAATTTTGTGTCTATCCACATGATCAAGTTTTGTTAGTTCACTTGTG CATGTTTTACTGCTTTGGGATCTTCTTTTTCCCCAATAGAATTCACTTATTTATTAATTATAAGAAGATATAGACACCAA ATTTCTAAAGATTCAAGTAAATCTAACATTTTTTTTTAAACATAGGAATATCCTAACTCTAGATTTCATTTATCTTGCAG CTGACCCTTTGTAGTTTTTTTTTTCTATAAGCCAAGTTGTCGCTTTCCATCTTGGTTTTCATATCATGATATTATAGCAC CAAGCATGCAGTTAGTGTTGTAGTTTAATGAACTGTGTTTATCTGATCTAAATTTAAGTTGATGCATCAGGATGTACCAA AGGCCTTTGTCAGGAAGCACTTAAAAAACAAGAAGCACTTGCGGTTGCGATTTGAAAATAAATTCTGGCCTGTAGGGTTG TACCATCTTCCAAAACGAGGTGTGGGCAAGTTGTCAAAAGGTTGGGCCCGATTTGCAAGAGAAAGTAAATTGCTGGTTGG AGATGTTTGTGTCTTTGAACTCATCAACAAGGAAGAAGATGCTCCTGTGTTTCATGTTCATATTTTCAAAGCCTAATGTC AAGGCCATAATATATTATTTGGAGATGTTTTGGTGAGGTATATCTATATTATATATGACTACTAGGCAATGAAATTGGTT ATGTAATGCTTAATTAATCCTTTAAAATATGTATGTCCTAAACTTAGTTTATCAGGTTTGTACATAAGTTGGTTAAATAT TTGGTATTTTTGTGTGTAGATATTATATATAGATTTTATCTGTGTTATCCTG
CDS sequence (LotjaGi2g1v0015800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTGCAACAAGCGAGACAAGCATTCTGCAATTCGTTTCTTTAAGATTATCACAACAAGAAGTCTTGAAGCTGGAAA ACTTATGCTTCCAAATGGTTTCACTAGGGAACATGGTGGTGATGTGTCAAACCCAGTGTTTCTCAAGCCTCCAGATGACA AAGACTGGAAGATACATTGGACTAAACATGAAGATGGCTATATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTTCATAC TACTCCCTTGATCATGGGTACTTGCTGTTGTTTGAATACAACAAACATTCTGATTTTGGGGTACACATATTTGACAAGAG TACCCTTGAAATAGAATACCCTTTCCAAGGCTATAAGGATGAACCCGACAATCTTGGTCAAATTAATGCTGATTTAGTTC AGAGTTTGGATGAGAGAACTTCATGCAAGAAGAGAAAACTGAAATCTCCAATGTCAAGTTCTCAACCAAGTAAGAAATTG AGACCTAGCACAAGTGGAGATGTTGGAAGAAGATCCAAATCGCCAAAGTTGCCTCAGCATGTTAAAGGTCATCATCAGTC TCAAGGGACCGAATTTGAGGAATTGGATGAGAATGTGAGTGGTGACTCCCTTGAATGCCTAAAATGGAAGGAGTTAACTT CTAAAATTACTAAGGCTTCAAACAGAGCCAGAACCATCACATCTAAAAACCCCTCTTTCAAAGTTGTCATCAAACCTGCC TATGCCAATAAATACATACGAGTTACATCAGAATTTGCAGAAAAGCATTTGAAGAACAAGCGAGGTGAGATCATCCTTCA TGTCAAGGATGGGAGAACATGGCCTGTTAAATATGTTCTTGAAAAAGGGACAATCAGTGCTGGATGGAAGAAATTTGTAT CAGACAATAACTTGAAAGTTGGGGATGTTTGTGTTTTTGAATTGACCAAGAGTCAACCTCTTTCTTTGAAGGTATCAATC TTTCCACCTGGGGGAGAATCAGATCAACCTCATTCCCCTCCATCACTAGGTAGGAAGGCAACTCAGAAAAGAGCTGATGC ATTCACCCCAAAAAACCCCTATTTCACAGCCAATATAAAGCCAAACAAGTGGGGGGATTACAGACAGGATGTACCAAAGG CCTTTGTCAGGAAGCACTTAAAAAACAAGAAGCACTTGCGGTTGCGATTTGAAAATAAATTCTGGCCTGTAGGGTTGTAC CATCTTCCAAAACGAGGTGTGGGCAAGTTGTCAAAAGGTTGGGCCCGATTTGCAAGAGAAAGTAAATTGCTGGTTGGAGA TGTTTGTGTCTTTGAACTCATCAACAAGGAAGAAGATGCTCCTGTGTTTCATGTTCATATTTTCAAAGCCTAA
Protein sequence (LotjaGi2g1v0015800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCNKRDKHSAIRFFKIITTRSLEAGKLMLPNGFTREHGGDVSNPVFLKPPDDKDWKIHWTKHEDGYIWFEKGWKEFASY YSLDHGYLLLFEYNKHSDFGVHIFDKSTLEIEYPFQGYKDEPDNLGQINADLVQSLDERTSCKKRKLKSPMSSSQPSKKL RPSTSGDVGRRSKSPKLPQHVKGHHQSQGTEFEELDENVSGDSLECLKWKELTSKITKASNRARTITSKNPSFKVVIKPA YANKYIRVTSEFAEKHLKNKRGEIILHVKDGRTWPVKYVLEKGTISAGWKKFVSDNNLKVGDVCVFELTKSQPLSLKVSI FPPGGESDQPHSPPSLGRKATQKRADAFTPKNPYFTANIKPNKWGDYRQDVPKAFVRKHLKNKKHLRLRFENKFWPVGLY HLPKRGVGKLSKGWARFARESKLLVGDVCVFELINKEEDAPVFHVHIFKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 108 | 104 | 9.9E-22 | ||
| SUPERFAMILY | 11 | 107 | 97 | 6.67E-19 | ||
| ProSiteProfiles | 13 | 107 | 95 | 12.52 | ||
| CDD | 13 | 105 | 93 | 1.26028E-12 | ||
| PANTHER | 13 | 322 | 310 | 3.8E-92 | – | |
| PANTHER | 13 | 322 | 310 | 3.8E-92 | – | |
| Pfam | 14 | 106 | 93 | 4.8E-12 | ||
| SMART | 14 | 107 | 94 | 1.1E-12 | ||
| MobiDBLite | 140 | 195 | 56 | - | – | |
| MobiDBLite | 147 | 170 | 24 | - | – | |
| Gene3D | 213 | 322 | 110 | 8.4E-31 | ||
| SUPERFAMILY | 226 | 323 | 98 | 6.67E-23 | ||
| CDD | 231 | 322 | 92 | 4.79905E-20 | ||
| ProSiteProfiles | 231 | 324 | 94 | 13.38 | ||
| SMART | 233 | 324 | 92 | 1.4E-18 | ||
| Pfam | 240 | 321 | 82 | 4.3E-17 | ||
| MobiDBLite | 319 | 342 | 24 | - | – | |
| Gene3D | 336 | 450 | 115 | 5.9E-27 | ||
| PANTHER | 339 | 449 | 111 | 3.8E-92 | – | |
| PANTHER | 339 | 449 | 111 | 3.8E-92 | – | |
| SUPERFAMILY | 348 | 449 | 102 | 1.33E-16 | ||
| CDD | 353 | 449 | 97 | 5.5418E-16 | ||
| ProSiteProfiles | 354 | 450 | 97 | 10.941 | ||
| SMART | 354 | 449 | 96 | 2.9E-7 | ||
| Pfam | 369 | 445 | 77 | 1.2E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0015800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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