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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0016700 |
| Transcript ID | LotjaGi2g1v0016700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A072VGT1|A0A072VGT1_MEDTR Plant-specific B3-DNA-binding domain protein; Found in the gene: LotjaGi2g1v0016700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:5708602..5714796) extracted from Lotus japonicus Gifu genome v1.2.
TGAATCAACCAATTAAAGTGAAAGCAATAGCTTCCTCACTTTCTTGGTTACCATCACTATCTGAAACCGTGGGACATAGA GAGGGAGAGAGAGCTTTTCTATAGTTCCAGCATCCATGACGACTCGCAACATGCCAAATAATCACTCTCCAATCCTTTTC TTTAAGATCATCACAACGACAAGTATTGAAGCTGGAGAGCTTGTAAGCATTCTTTTCTTCATCTCCTCTTTAGTTCTTTC TGACTCTTTTTCTTTTTTTTCTTTGGTCATTTTACTTAAAAATGTTGATCTACTACACCTAATTAAAATGTGATGGACTA GAACTGCTTGCCTTGTTAGAATTTCTAAATTATTTTGTATTTTTTAGTAGTTAGAAACTGATGCCACACACTACAGATTA GAAACTAGGAAATCATTAGCATCATTGGTTAATAAATTAAAAACATGTTTCTGTTGTGCTGGTGAATTTTGCTATGCAAT ATGCATGCTCATGGAAAGTTTGGTGCAGAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGTCAAACCCAA TGTTTCTCAAGCCTCCAGATGGAACTGAATGGCAAATATGTCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGT TGGAAAGATTTTGCGAAATATTACTCCCTCGATCACGGACACATGGTGTTGTTTGAATACAAGGATTCTTCTCATTTTGG GGTACATATATTTGATAAGAGCACCCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATC AGATTGATGATGACTCTGTTGAGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGT CCTAAACCACGCAAGAAATTGAGAACCAGTACAAGTGAAGATGTTGGAGAAAGGCCTGAATTGCACAACTTGCCTAAACA AGTCAAAATTGAAGGTTGGATTATCCTTTTCATTTCATAGATCATTTTGAGATTGTGAGGCCATATTTTTGTAAAATAAC CATTCTGTTCAACATTTCAGATGATGTCAGTGGAAATACTGAATGCCTTGAAAGGGAGGACTTAACTTCCAAAATCACTG AAGCTTTGAACAGAGCCAGAACTTTCCAATCTAAAATTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTGATGGA TATTCCTTGGTGAGATTTTGTTCAACCTAATTTTTATCCATTAAGATAGCTTTGTATAGTGCAGAAGTATAACTTGTTAG GTTTTCTGACTTGTATAAAAAAAATCCAGCATATCTCATCATTATTTGCAAAAAAATATTTGAAGAATGCAACGGATGTC CTCCTGCAAGTCTTGGATGGGAGAACTTGGTCTGTTAGTTTTAACCTCGGTAAATTCAATGCTGGGTGGAAGAAATTCGC ATCAGTTAATAATTTGAAGGTGGGAGATGTATGTCTTTTTGAGCTAAACAAGAGTGTACCCCATTCATTGAAAGTATTGA TCTTTCCACTTGCGGAAAAACTGCATTCGCCGTCTCAATCACCAGGTAATCCAAGTTTGTTTTTGTTTGAGTTTTATTCC ATTTGATCTGCATAGTATTGGTTCTAATTTTCTTCCTTGGAATCAGTTCAAGGAGATAGAGTCAATCGTATCAACTATGG GAGATTCCGGTATACTGAAATTCAAAATGTTCTTACCACCAAATGTAAATCTTAAATATCAATGTTGTTTTGCCACTGAG CAAGTGGTAGTTAATTATTATCTTATTACTCGTCCCTATGAAATGGTTAAGGAGTAATGATATATACACACCTCATTTTT AAAACACTTCATTTCCACCTCTTTTTGTTTCTATCTCTCTCCTCTTATGATGAGTACTTGGAGTCAGTTAGTTAGTTAAG GGTTAGCCCATAGAGTTAGTTAGTTAGTTAAGGCTTAGTCTATAAATAAGGGAGTGTGAAGAGGGTTTAGTATCTTTGGG GATCATTTGGGAATTGGGAATTAGGAGAGTGATGAGTCTCTCGAATACTCATCTGTTTCTTGTACATTTTTCTGTTGAAT AATATCAGGGTTTCATCAATTGGTATCAGAGCTCCGATCTTGGAGCTGTGGTAGCTAGAAAAGAGCAGAATGGAGAAGAA GATTCCAGAGTTTGATGGAAGAGAGGCTTATGGATGGCTCATCATGGTGGAGCAACACTGTGAAGACAAGGGAGTATCCG AAGAGGAGAAATTCTCAGAGGCAGAGAAGGCTTTGACAGGTGAAGCTTTCATGTGGTGGTTTTGCTGGAGAAGACGCAAT CAGAAGGCAACATGGTGGGAATTTGTGGAGGCTCTGTTGAGGAAATTCGAACCAGAATTGGAACCGTACATGCCAGAACC AGTCCAAGATTCAGAGGAGGAAGAAACAACTGATTCGGTGGAAGCTAAACCTGAGGCCAATTCAGGGTTGGCGAAATCAG AGATCATGCCACATTCGCAGGAGAATTCTGAAACGGAAGCGTCGCAAGAAGACTCGGATTTTGCAGCGGCGGCGGAGCGA ACAGTGGTGGCGTCACGGTGTAAATCCGACGTCGTGGTCGGTTCCAGTGGTTGCTTGTTGACGGCGAAAGGGGAGAAGAT CGACGCCGAAGGGGAAATCAAAATCAAGCGGTTACAGGAAGGTTCTTCAATGGAGAAATTGCAGATTTGCAACGTTCATG GGAGGAAGAAGGTGCAACCAATCATTTTGCCCCAAATCAGTGATTTAGGGTTCGATTGGGAGAGACGGCCGCCGCGGAAA CCGCCGGATTCATGTCTTCGCACGCCAGTAACCGCCAATCGACCACCGAAAACGTTCCTTGGTTGGACGGGGGTCTCCAA ACAGACCTCGGTTTCATGCTCGTCGATGGTTTCCAATCGACTGGAGACTGAATCGCCAGACCGCAGCGGTGGTGGTTCAC GCTTCATTTCCGGCGATCCTTGCAGATCCGACTCCCTGGCCATGCGTCCTCCAGCCAAGCCTCCAGATTCGGTTGAGACA GCGGGGTGGAGAGGCTGTAGCTTCGAGTTCGGAGTTCGCGTGGCGAAAAGGAAGGGAAGCTCGCTCATGTGCACGCCGGA ACCCGCCTTACGGCCGCCGGCGAAGCCACCGGACCTTGCAGTTACGGCGATGGAAGAAAGAAAACTGAAGTGGGGAAGAT ACGGGTTTGGGTATCTGCCGCTGACTCCTTGCGAGGTTCAAGCTTGGCACGTGAGGGAAGTGGGCCCGAGTGAGAAGGCT CCAGTTGAACCCCTCTCCAATCCGAATGGGCCAAGCCCAATCCATTCATTGAAAGAGTTTGAGCCTGACAGGAAGTGACA CAAAAAAAAAAAAATAACAACCTGGCCAAGGAATGCGAGTGGGCCTATGAATGCAACTTTGGCCCAATTTTGCATGTTTT TTGCTCTGTTTACTTTTCTATGTTTTTGTTTCAAGGAGCTTGTTTTTTTACCCCACCTTGAGGACAAGGTGGATGTTTAG GGGGGAGTATTGATGAGTACTTGGAGTCAGTTAGTTAGTTAAGGGTTAGCCCATAGAGTTAGTTAGTTAGTTAAGGCTTA GTCTATAAATAAGGGAGTGTGAAGAGGGTTTAGTATCTTTGGGGATCATTTGGGAATTGGGAATTAGGAGAGTGATGAGT CTCTCGAATACTCATCTGTTTCTTGTACATTTTTCTGTTGAATAATATCAGGGTTTCATCAGGGTTTAGCTTCCACCGAA TCAGTTGTTTCTTCCTCCTCTGAATCTTGGACTGGTTCTGGCATGTACGGTTCCAATTCTGGTTCGAATTTCCTCAACAG AGCCTCCACAAATTCCCACCATGTTGCCTTCTGATTGCGTCTTCTCCAGCAAAACCACCACATGAAAGCTTCACCTGTCA AAGCCTTCTCTGCCTCTGAGAATTTCTCCTCTTCGGATACTCCCTTGTCTTCACAGTGTTGCTCCACCATGATGAGCCAT CCATAAGCCTCTCTTCCATCAAACTCTGGAATCTTCTTCTCCATTCTGCTCTTTTCTGGCTACCACAGCTCCAAGATCGG AGCTCTGATACCAATTGATGAAACCCTGATATTATTCAACAGAAAAATGTACAAGAAACAGATGAGTATTCGAGTGACTC ATCACTCTCCTAATTCCCAATTCCCAAATGATCCCCAAAGATACTAAACCCTCTTCACACTCCCTTATTTATAGACTAAG CCTTAACTAACTAACTAACTCTATGGGCTAACCCTTAACTAACTAACTGACTCCAAGTACTCATCAATTTACCATCTATC ACATCTCATACTTTCTCTCCCTTACTTTTTCTTTTCTTCCTATCTCTCTCATCATTCCACCTCACACACCTCAAAAGAGA GGTGTGTGAGTAACATTACTCATGGTTAAGTTCATTCAACTGAAAATGCAACTATAGATTTTTCAAAATTGTACATAATG CATCCTTAAGCTAATTAACATATATACCACAGGTGGGGAGACAACTAAAAGAGCTTCAAAGCTAATTAGCCCCCGCCTCC GCCCCTTGACAAATGCTGCTCTGGAAGAAGCTAACAAATTCAACTCAAACAACCCTTTTTTCATAGTCAATTTAGCGCCA GATATGGAGTGGGATTACAGACCGACCGGTAAGTTTATCAAGCAGCTAATCAAATAGCTAGGTGTGTCGTATTTTGTGTT TGTGTTTGGATACTGGTTGAATGCAATATTAAGTGTGTGTTTGGATTTCAATTTGCAAAATAGAGTTTGAGTGAATGTAG GTTTGCAAAAAAGAATTTGAGCCAAAGTAAGTTGAGTGTAATGTGATTTATGTTTGGATAAAATAATATAGTGAGAGTTG TGTTCAATTAATGCCTCAACGGTACCAGGTACCAACTGAAAGTAGAAGTGAGGGTTGTGTCAAGTTGGCTGAATGTGGGG TTTGAGGCAAAAGTGGGTTAAGGTGAAAGTGGGTTCAAATTACCCAAACATGATGGCACACTGTTACATGCAAACCAAAA GCACATTTAATGGGTCAAACAGAAAAACAAACGTAGCCTAAGACTTTTATCTCATCCCATCCCATGAAAAGAGTTTTTTT TTTCATTTTTTGTCTTGAATTGGGTGCTAATCAAGGGCGGACCTACCACAGGGCTTGGTAGGTCCAATGCCCTGGCTCAA AGAAAAAAAAATGAAAATTTCTTTGGACTAGGTAGGTTTTTTTGACCCAAAAAAAAATAGAGAAAAGACAAATTTATAAG GAAAGACAGTTTAGGGACTTAATCATAAAATTTGCCTAGGCTTCATAAAACTTCTAGTTCTACCACTGGTGCTAATGTAT GTTTGCATCACTACAAACGGATATCCATCATCCAAAGACACCTTAATACTCATCAGTCTCCTAATTCCCATAAAAAATTA CATATATCTTTATAGAAATTTAATTTTGTACCATGCTAGCAGCAAACCTGAAAGTTATTGTTATCTACTATGATTAGCTG TTAGGCTCTGATCTTGTGGTGATAAAAAATATGATTTGATGCAGCGTGTACCAAATCCCTTCATCAGAGAGTACTTCAAT GACATGCAGCAGACCATAATGTTACAGTACGAAAAGAAATTGTGGCCTGTGAAGTTGATCTGTTATCCAAAAAAAGGTTC AGGCAAGTTGTCCAAAGGTTGGGTCGAATTTGCTGGAAAAAGTAAATTGGTAGTTGGAGATGCTTGTGTGTTTGAGCTCA TCAATAAGGAAGATCCGGTGCTTGATGTTCACATTTTCAGAGGTCACTGATATTTGAAGCTGTTAGTACCATACAAAATG TACCACTGCTTCTAAATACAATGGACAAAAACATTAAACTAACCTTTGCTGTATTATGTCTACATTGATAAATACTCAGT TATATAGTCCTGTATGAATGAAATTTTTCTGCTTTGTAGAATGAAATTTTCGATTCTGTTCTGCCTGCACTCTGCCCCAT CTCTTGTTTATTTTTCTATAACCTTGATAAATTCTTACTCAAATACAAGCTTCTTTGGTGTAAATTGTAAACAATTGGTA GAATGAAATTTTTCTGCTTTGTAGAATGAAATTTTCGATTCTGTTCTGCCTGCACTCTGCCCCATCTCTTGTTTATTTTT CTATAACCTTGATAAATTCTTACTCAAATACAAGC
CDS sequence (LotjaGi2g1v0016700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCATGGAAAGTTTGGTGCAGAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGTCAAACCCAATGTT TCTCAAGCCTCCAGATGGAACTGAATGGCAAATATGTCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGA AAGATTTTGCGAAATATTACTCCCTCGATCACGGACACATGGTGTTGTTTGAATACAAGGATTCTTCTCATTTTGGGGTA CATATATTTGATAAGAGCACCCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGAT TGATGATGACTCTGTTGAGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTA AACCACGCAAGAAATTGAGAACCAGTACAAGTGAAGATGTTGGAGAAAGGCCTGAATTGCACAACTTGCCTAAACAAGTC AAAATTGAAGATGATGTCAGTGGAAATACTGAATGCCTTGAAAGGGAGGACTTAACTTCCAAAATCACTGAAGCTTTGAA CAGAGCCAGAACTTTCCAATCTAAAATTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTGATGGATATTCCTTGC ATATCTCATCATTATTTGCAAAAAAATATTTGAAGAATGCAACGGATGTCCTCCTGCAAGTCTTGGATGGGAGAACTTGG TCTGTTAGTTTTAACCTCGGTAAATTCAATGCTGGGTGGAAGAAATTCGCATCAGTTAATAATTTGAAGGTGGGAGATGT ATGTCTTTTTGAGCTAAACAAGAGTGTACCCCATTCATTGAAAGTATTGATCTTTCCACTTGCGGAAAAACTGCATTCGC CGTCTCAATCACCAGCGTGTACCAAATCCCTTCATCAGAGAGTACTTCAATGA
Protein sequence (LotjaGi2g1v0016700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMESLVQRIPNNFTKRYGGDMSNPMFLKPPDGTEWQICHSKTDGDVWFQNGWKDFAKYYSLDHGHMVLFEYKDSSHFGV HIFDKSTLEIRYPSHENQDEEHNPDQIDDDSVEILDKIPPCKKTKLKSPMSCPKPRKKLRTSTSEDVGERPELHNLPKQV KIEDDVSGNTECLEREDLTSKITEALNRARTFQSKIPSFMTVMKPAYVDGYSLHISSLFAKKYLKNATDVLLQVLDGRTW SVSFNLGKFNAGWKKFASVNNLKVGDVCLFELNKSVPHSLKVLIFPLAEKLHSPSQSPACTKSLHQRVLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 86 | 86 | 12.971 | ||
| Gene3D | 2 | 87 | 86 | 3.5E-21 | ||
| SMART | 2 | 86 | 85 | 5.4E-4 | ||
| PANTHER | 7 | 286 | 280 | 3.5E-70 | – | |
| PANTHER | 7 | 286 | 280 | 3.5E-70 | – | |
| SUPERFAMILY | 8 | 86 | 79 | 2.75E-18 | ||
| CDD | 9 | 84 | 76 | 8.42012E-14 | ||
| Pfam | 9 | 85 | 77 | 1.5E-12 | ||
| MobiDBLite | 124 | 150 | 27 | - | – | |
| Gene3D | 179 | 289 | 111 | 3.0E-25 | ||
| SUPERFAMILY | 192 | 285 | 94 | 1.24E-16 | ||
| CDD | 197 | 286 | 90 | 1.05436E-16 | ||
| ProSiteProfiles | 198 | 288 | 91 | 10.828 | ||
| Pfam | 199 | 285 | 87 | 1.9E-12 | ||
| SMART | 199 | 288 | 90 | 3.4E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0016700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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