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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0016700 |
| Transcript ID | LotjaGi2g1v0016700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A072VGT1|A0A072VGT1_MEDTR Plant-specific B3-DNA-binding domain protein; Found in the gene: LotjaGi2g1v0016700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:5708609..5714803) extracted from Lotus japonicus Gifu genome v1.2.
ACCAATTAAAGTGAAAGCAATAGCTTCCTCACTTTCTTGGTTACCATCACTATCTGAAACCGTGGGACATAGAGAGGGAG AGAGAGCTTTTCTATAGTTCCAGCATCCATGACGACTCGCAACATGCCAAATAATCACTCTCCAATCCTTTTCTTTAAGA TCATCACAACGACAAGTATTGAAGCTGGAGAGCTTGTAAGCATTCTTTTCTTCATCTCCTCTTTAGTTCTTTCTGACTCT TTTTCTTTTTTTTCTTTGGTCATTTTACTTAAAAATGTTGATCTACTACACCTAATTAAAATGTGATGGACTAGAACTGC TTGCCTTGTTAGAATTTCTAAATTATTTTGTATTTTTTAGTAGTTAGAAACTGATGCCACACACTACAGATTAGAAACTA GGAAATCATTAGCATCATTGGTTAATAAATTAAAAACATGTTTCTGTTGTGCTGGTGAATTTTGCTATGCAATATGCATG CTCATGGAAAGTTTGGTGCAGAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGTCAAACCCAATGTTTCT CAAGCCTCCAGATGGAACTGAATGGCAAATATGTCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGAAAG ATTTTGCGAAATATTACTCCCTCGATCACGGACACATGGTGTTGTTTGAATACAAGGATTCTTCTCATTTTGGGGTACAT ATATTTGATAAGAGCACCCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGATTGA TGATGACTCTGTTGAGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTAAAC CACGCAAGAAATTGAGAACCAGTACAAGTGAAGATGTTGGAGAAAGGCCTGAATTGCACAACTTGCCTAAACAAGTCAAA ATTGAAGGTTGGATTATCCTTTTCATTTCATAGATCATTTTGAGATTGTGAGGCCATATTTTTGTAAAATAACCATTCTG TTCAACATTTCAGATGATGTCAGTGGAAATACTGAATGCCTTGAAAGGGAGGACTTAACTTCCAAAATCACTGAAGCTTT GAACAGAGCCAGAACTTTCCAATCTAAAATTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTGATGGATATTCCT TGGTGAGATTTTGTTCAACCTAATTTTTATCCATTAAGATAGCTTTGTATAGTGCAGAAGTATAACTTGTTAGGTTTTCT GACTTGTATAAAAAAAATCCAGCATATCTCATCATTATTTGCAAAAAAATATTTGAAGAATGCAACGGATGTCCTCCTGC AAGTCTTGGATGGGAGAACTTGGTCTGTTAGTTTTAACCTCGGTAAATTCAATGCTGGGTGGAAGAAATTCGCATCAGTT AATAATTTGAAGGTGGGAGATGTATGTCTTTTTGAGCTAAACAAGAGTGTACCCCATTCATTGAAAGTATTGATCTTTCC ACTTGCGGAAAAACTGCATTCGCCGTCTCAATCACCAGGTAATCCAAGTTTGTTTTTGTTTGAGTTTTATTCCATTTGAT CTGCATAGTATTGGTTCTAATTTTCTTCCTTGGAATCAGTTCAAGGAGATAGAGTCAATCGTATCAACTATGGGAGATTC CGGTATACTGAAATTCAAAATGTTCTTACCACCAAATGTAAATCTTAAATATCAATGTTGTTTTGCCACTGAGCAAGTGG TAGTTAATTATTATCTTATTACTCGTCCCTATGAAATGGTTAAGGAGTAATGATATATACACACCTCATTTTTAAAACAC TTCATTTCCACCTCTTTTTGTTTCTATCTCTCTCCTCTTATGATGAGTACTTGGAGTCAGTTAGTTAGTTAAGGGTTAGC CCATAGAGTTAGTTAGTTAGTTAAGGCTTAGTCTATAAATAAGGGAGTGTGAAGAGGGTTTAGTATCTTTGGGGATCATT TGGGAATTGGGAATTAGGAGAGTGATGAGTCTCTCGAATACTCATCTGTTTCTTGTACATTTTTCTGTTGAATAATATCA GGGTTTCATCAATTGGTATCAGAGCTCCGATCTTGGAGCTGTGGTAGCTAGAAAAGAGCAGAATGGAGAAGAAGATTCCA GAGTTTGATGGAAGAGAGGCTTATGGATGGCTCATCATGGTGGAGCAACACTGTGAAGACAAGGGAGTATCCGAAGAGGA GAAATTCTCAGAGGCAGAGAAGGCTTTGACAGGTGAAGCTTTCATGTGGTGGTTTTGCTGGAGAAGACGCAATCAGAAGG CAACATGGTGGGAATTTGTGGAGGCTCTGTTGAGGAAATTCGAACCAGAATTGGAACCGTACATGCCAGAACCAGTCCAA GATTCAGAGGAGGAAGAAACAACTGATTCGGTGGAAGCTAAACCTGAGGCCAATTCAGGGTTGGCGAAATCAGAGATCAT GCCACATTCGCAGGAGAATTCTGAAACGGAAGCGTCGCAAGAAGACTCGGATTTTGCAGCGGCGGCGGAGCGAACAGTGG TGGCGTCACGGTGTAAATCCGACGTCGTGGTCGGTTCCAGTGGTTGCTTGTTGACGGCGAAAGGGGAGAAGATCGACGCC GAAGGGGAAATCAAAATCAAGCGGTTACAGGAAGGTTCTTCAATGGAGAAATTGCAGATTTGCAACGTTCATGGGAGGAA GAAGGTGCAACCAATCATTTTGCCCCAAATCAGTGATTTAGGGTTCGATTGGGAGAGACGGCCGCCGCGGAAACCGCCGG ATTCATGTCTTCGCACGCCAGTAACCGCCAATCGACCACCGAAAACGTTCCTTGGTTGGACGGGGGTCTCCAAACAGACC TCGGTTTCATGCTCGTCGATGGTTTCCAATCGACTGGAGACTGAATCGCCAGACCGCAGCGGTGGTGGTTCACGCTTCAT TTCCGGCGATCCTTGCAGATCCGACTCCCTGGCCATGCGTCCTCCAGCCAAGCCTCCAGATTCGGTTGAGACAGCGGGGT GGAGAGGCTGTAGCTTCGAGTTCGGAGTTCGCGTGGCGAAAAGGAAGGGAAGCTCGCTCATGTGCACGCCGGAACCCGCC TTACGGCCGCCGGCGAAGCCACCGGACCTTGCAGTTACGGCGATGGAAGAAAGAAAACTGAAGTGGGGAAGATACGGGTT TGGGTATCTGCCGCTGACTCCTTGCGAGGTTCAAGCTTGGCACGTGAGGGAAGTGGGCCCGAGTGAGAAGGCTCCAGTTG AACCCCTCTCCAATCCGAATGGGCCAAGCCCAATCCATTCATTGAAAGAGTTTGAGCCTGACAGGAAGTGACACAAAAAA AAAAAAATAACAACCTGGCCAAGGAATGCGAGTGGGCCTATGAATGCAACTTTGGCCCAATTTTGCATGTTTTTTGCTCT GTTTACTTTTCTATGTTTTTGTTTCAAGGAGCTTGTTTTTTTACCCCACCTTGAGGACAAGGTGGATGTTTAGGGGGGAG TATTGATGAGTACTTGGAGTCAGTTAGTTAGTTAAGGGTTAGCCCATAGAGTTAGTTAGTTAGTTAAGGCTTAGTCTATA AATAAGGGAGTGTGAAGAGGGTTTAGTATCTTTGGGGATCATTTGGGAATTGGGAATTAGGAGAGTGATGAGTCTCTCGA ATACTCATCTGTTTCTTGTACATTTTTCTGTTGAATAATATCAGGGTTTCATCAGGGTTTAGCTTCCACCGAATCAGTTG TTTCTTCCTCCTCTGAATCTTGGACTGGTTCTGGCATGTACGGTTCCAATTCTGGTTCGAATTTCCTCAACAGAGCCTCC ACAAATTCCCACCATGTTGCCTTCTGATTGCGTCTTCTCCAGCAAAACCACCACATGAAAGCTTCACCTGTCAAAGCCTT CTCTGCCTCTGAGAATTTCTCCTCTTCGGATACTCCCTTGTCTTCACAGTGTTGCTCCACCATGATGAGCCATCCATAAG CCTCTCTTCCATCAAACTCTGGAATCTTCTTCTCCATTCTGCTCTTTTCTGGCTACCACAGCTCCAAGATCGGAGCTCTG ATACCAATTGATGAAACCCTGATATTATTCAACAGAAAAATGTACAAGAAACAGATGAGTATTCGAGTGACTCATCACTC TCCTAATTCCCAATTCCCAAATGATCCCCAAAGATACTAAACCCTCTTCACACTCCCTTATTTATAGACTAAGCCTTAAC TAACTAACTAACTCTATGGGCTAACCCTTAACTAACTAACTGACTCCAAGTACTCATCAATTTACCATCTATCACATCTC ATACTTTCTCTCCCTTACTTTTTCTTTTCTTCCTATCTCTCTCATCATTCCACCTCACACACCTCAAAAGAGAGGTGTGT GAGTAACATTACTCATGGTTAAGTTCATTCAACTGAAAATGCAACTATAGATTTTTCAAAATTGTACATAATGCATCCTT AAGCTAATTAACATATATACCACAGGTGGGGAGACAACTAAAAGAGCTTCAAAGCTAATTAGCCCCCGCCTCCGCCCCTT GACAAATGCTGCTCTGGAAGAAGCTAACAAATTCAACTCAAACAACCCTTTTTTCATAGTCAATTTAGCGCCAGATATGG AGTGGGATTACAGACCGACCGGTAAGTTTATCAAGCAGCTAATCAAATAGCTAGGTGTGTCGTATTTTGTGTTTGTGTTT GGATACTGGTTGAATGCAATATTAAGTGTGTGTTTGGATTTCAATTTGCAAAATAGAGTTTGAGTGAATGTAGGTTTGCA AAAAAGAATTTGAGCCAAAGTAAGTTGAGTGTAATGTGATTTATGTTTGGATAAAATAATATAGTGAGAGTTGTGTTCAA TTAATGCCTCAACGGTACCAGGTACCAACTGAAAGTAGAAGTGAGGGTTGTGTCAAGTTGGCTGAATGTGGGGTTTGAGG CAAAAGTGGGTTAAGGTGAAAGTGGGTTCAAATTACCCAAACATGATGGCACACTGTTACATGCAAACCAAAAGCACATT TAATGGGTCAAACAGAAAAACAAACGTAGCCTAAGACTTTTATCTCATCCCATCCCATGAAAAGAGTTTTTTTTTTCATT TTTTGTCTTGAATTGGGTGCTAATCAAGGGCGGACCTACCACAGGGCTTGGTAGGTCCAATGCCCTGGCTCAAAGAAAAA AAAATGAAAATTTCTTTGGACTAGGTAGGTTTTTTTGACCCAAAAAAAAATAGAGAAAAGACAAATTTATAAGGAAAGAC AGTTTAGGGACTTAATCATAAAATTTGCCTAGGCTTCATAAAACTTCTAGTTCTACCACTGGTGCTAATGTATGTTTGCA TCACTACAAACGGATATCCATCATCCAAAGACACCTTAATACTCATCAGTCTCCTAATTCCCATAAAAAATTACATATAT CTTTATAGAAATTTAATTTTGTACCATGCTAGCAGCAAACCTGAAAGTTATTGTTATCTACTATGATTAGCTGTTAGGCT CTGATCTTGTGGTGATAAAAAATATGATTTGATGCAGCGTGTACCAAATCCCTTCATCAGAGAGTACTTCAATGACATGC AGCAGACCATAATGTTACAGTACGAAAAGAAATTGTGGCCTGTGAAGTTGATCTGTTATCCAAAAAAAGGTTCAGGCAAG TTGTCCAAAGGTTGGGTCGAATTTGCTGGAAAAAGTAAATTGGTAGTTGGAGATGCTTGTGTGTTTGAGCTCATCAATAA GGAAGATCCGGTGCTTGATGTTCACATTTTCAGAGGTCACTGATATTTGAAGCTGTTAGTACCATACAAAATGTACCACT GCTTCTAAATACAATGGACAAAAACATTAAACTAACCTTTGCTGTATTATGTCTACATTGATAAATACTCAGTTATATAG TCCTGTATGAATGAAATTTTTCTGCTTTGTAGAATGAAATTTTCGATTCTGTTCTGCCTGCACTCTGCCCCATCTCTTGT TTATTTTTCTATAACCTTGATAAATTCTTACTCAAATACAAGCTTCTTTGGTGTAAATTGTAAACAATTGGTAGAATGAA ATTTTTCTGCTTTGTAGAATGAAATTTTCGATTCTGTTCTGCCTGCACTCTGCCCCATCTCTTGTTTATTTTTCTATAAC CTTGATAAATTCTTACTCAAATACAAGCTTCTTTG
CDS sequence (LotjaGi2g1v0016700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACTCGCAACATGCCAAATAATCACTCTCCAATCCTTTTCTTTAAGATCATCACAACGACAAGTATTGAAGCTGG AGAGCTTAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGTCAAACCCAATGTTTCTCAAGCCTCCAGATG GAACTGAATGGCAAATATGTCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGAAAGATTTTGCGAAATAT TACTCCCTCGATCACGGACACATGGTGTTGTTTGAATACAAGGATTCTTCTCATTTTGGGGTACATATATTTGATAAGAG CACCCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGATTGATGATGACTCTGTTG AGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTAAACCACGCAAGAAATTG AGAACCAGTACAAGTGAAGATGTTGGAGAAAGGCCTGAATTGCACAACTTGCCTAAACAAGTCAAAATTGAAGATGATGT CAGTGGAAATACTGAATGCCTTGAAAGGGAGGACTTAACTTCCAAAATCACTGAAGCTTTGAACAGAGCCAGAACTTTCC AATCTAAAATTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTGATGGATATTCCTTGCATATCTCATCATTATTT GCAAAAAAATATTTGAAGAATGCAACGGATGTCCTCCTGCAAGTCTTGGATGGGAGAACTTGGTCTGTTAGTTTTAACCT CGGTAAATTCAATGCTGGGTGGAAGAAATTCGCATCAGTTAATAATTTGAAGGTGGGAGATGTATGTCTTTTTGAGCTAA ACAAGAGTGTACCCCATTCATTGAAAGTATTGATCTTTCCACTTGCGGAAAAACTGCATTCGCCGTCTCAATCACCAGGT GGGGAGACAACTAAAAGAGCTTCAAAGCTAATTAGCCCCCGCCTCCGCCCCTTGACAAATGCTGCTCTGGAAGAAGCTAA CAAATTCAACTCAAACAACCCTTTTTTCATAGTCAATTTAGCGCCAGATATGGAGTGGGATTACAGACCGACCGCGTGTA CCAAATCCCTTCATCAGAGAGTACTTCAATGA
Protein sequence (LotjaGi2g1v0016700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTRNMPNNHSPILFFKIITTTSIEAGELRIPNNFTKRYGGDMSNPMFLKPPDGTEWQICHSKTDGDVWFQNGWKDFAKY YSLDHGHMVLFEYKDSSHFGVHIFDKSTLEIRYPSHENQDEEHNPDQIDDDSVEILDKIPPCKKTKLKSPMSCPKPRKKL RTSTSEDVGERPELHNLPKQVKIEDDVSGNTECLEREDLTSKITEALNRARTFQSKIPSFMTVMKPAYVDGYSLHISSLF AKKYLKNATDVLLQVLDGRTWSVSFNLGKFNAGWKKFASVNNLKVGDVCLFELNKSVPHSLKVLIFPLAEKLHSPSQSPG GETTKRASKLISPRLRPLTNAALEEANKFNSNNPFFIVNLAPDMEWDYRPTACTKSLHQRVLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 308 | 305 | 2.0E-77 | – | |
| PANTHER | 4 | 308 | 305 | 2.0E-77 | – | |
| Gene3D | 7 | 108 | 102 | 8.3E-24 | ||
| SUPERFAMILY | 10 | 107 | 98 | 5.69E-22 | ||
| CDD | 14 | 105 | 92 | 7.26616E-17 | ||
| ProSiteProfiles | 14 | 107 | 94 | 13.422 | ||
| Pfam | 15 | 106 | 92 | 1.0E-14 | ||
| SMART | 15 | 107 | 93 | 5.9E-11 | ||
| MobiDBLite | 145 | 171 | 27 | - | – | |
| Gene3D | 200 | 310 | 111 | 4.5E-25 | ||
| SUPERFAMILY | 213 | 306 | 94 | 1.84E-16 | ||
| CDD | 218 | 307 | 90 | 6.84556E-17 | ||
| ProSiteProfiles | 219 | 309 | 91 | 10.828 | ||
| SMART | 220 | 309 | 90 | 3.4E-13 | ||
| Pfam | 220 | 306 | 87 | 2.8E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0016700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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