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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0021500 |
| Transcript ID | LotjaGi2g1v0021500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF241 domain protein; TAIR: AT1G76210.1 DUF241 domain protein, putative (DUF241); Swiss-Prot: sp|A7FTY1|MURE_CLOB1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; TrEMBL-Plants: tr|A0A072VS58|A0A072VS58_MEDTR DUF241 domain protein; Found in the gene: LotjaGi2g1v0021500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:7691453..7692335) extracted from Lotus japonicus Gifu genome v1.2.
ATGACACCCCTTGATTTTGATGCTCTTAAAGACATGCAAAACTCTGCAAATGACCTCCTTCATTCTCCATTGGTTCAACA AGCCCTTGTCCACTGGCACGAAGAAAAATGGGTCAGTGATGTCTCTGAGTCCTCTCTGAGGATATTGGAGGTGTGTGGCA TCTCCAAAGATGTTCTTTTGCTTGTGAAAGAACACCTTCAAGAACTCCAATTCACTTTACGAAGAGCAAGCATTGGTGAG CCAGGAATTGAGGGAAAAATCACAGCTTTCAATTGCTATAGGAAGAAGTTAAAGAAAGAGACTTTAAAGTGCTTGAAATG GTTGAAGGGTATGAAGACTGAAAAAATAATCACTTCAATGAAGGACCAAAAACTAACTCTGGTTGTTGATGTTCTGAGGG AAGTGAGGATGACAAGCATTTCCACTGTGGAATCACTGTTGTCACTAATTTCATCACCATGGTTGGATTATTCAAGAACA GGGAAAAGGTCTTTCATGTCAAAGCTTGTTCATGTGAATTTGCAGAATAATTCATCAGATCATGATATGTATTATGATGC CATGGTGCTTCAAAGTGCAAATAAAAGGCTAGCAGGGGTTCAAATGGCAATAGAAGATCTAGAAGTTGAGTTGGAGTGCA TGTTCAGACGTTTGATCCACACAAGGGTTTTGCTTCTTAACATATATACTTACCAACTTGGAACACCAAATCAACTAGCT AGCTCAAAATCCTTTAGATATATATAACATCTGTTATTCTCTTGAGCATGTTACTTAGACTTTTAACCATTCTTTCTATT CTTTAATTCTTTCAAATAACTACCTTAATTGTAAGTCTGCAATCAACATCCAATATAACAGAACATTGTCTGTTCCATCT TAG
CDS sequence (LotjaGi2g1v0021500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACCCCTTGATTTTGATGCTCTTAAAGACATGCAAAACTCTGCAAATGACCTCCTTCATTCTCCATTGGTTCAACA AGCCCTTGTCCACTGGCACGAAGAAAAATGGGTCAGTGATGTCTCTGAGTCCTCTCTGAGGATATTGGAGGTGTGTGGCA TCTCCAAAGATGTTCTTTTGCTTGTGAAAGAACACCTTCAAGAACTCCAATTCACTTTACGAAGAGCAAGCATTGGTGAG CCAGGAATTGAGGGAAAAATCACAGCTTTCAATTGCTATAGGAAGAAGTTAAAGAAAGAGACTTTAAAGTGCTTGAAATG GTTGAAGGGTATGAAGACTGAAAAAATAATCACTTCAATGAAGGACCAAAAACTAACTCTGGTTGTTGATGTTCTGAGGG AAGTGAGGATGACAAGCATTTCCACTGTGGAATCACTGTTGTCACTAATTTCATCACCATGGTTGGATTATTCAAGAACA GGGAAAAGGTCTTTCATGTCAAAGCTTGTTCATGTGAATTTGCAGAATAATTCATCAGATCATGATATGTATTATGATGC CATGGTGCTTCAAAGTGCAAATAAAAGGCTAGCAGGGGTTCAAATGGCAATAGAAGATCTAGAAGTTGAGTTGGAGTGCA TGTTCAGACGTTTGATCCACACAAGGGTTTTGCTTCTTAACATAACATTGTCTGTTCCATCTTAG
Protein sequence (LotjaGi2g1v0021500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPLDFDALKDMQNSANDLLHSPLVQQALVHWHEEKWVSDVSESSLRILEVCGISKDVLLLVKEHLQELQFTLRRASIGE PGIEGKITAFNCYRKKLKKETLKCLKWLKGMKTEKIITSMKDQKLTLVVDVLREVRMTSISTVESLLSLISSPWLDYSRT GKRSFMSKLVHVNLQNNSSDHDMYYDAMVLQSANKRLAGVQMAIEDLEVELECMFRRLIHTRVLLLNITLSVPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 228 | 228 | 1.8E-101 | – | |
| PANTHER | 1 | 228 | 228 | 1.8E-101 | – | |
| Pfam | 6 | 228 | 223 | 1.2E-65 | ||
| Coils | 190 | 210 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0021500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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