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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0023200 |
| Transcript ID | LotjaGi2g1v0023200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P34909|NOT4_YEAST General negative regulator of transcription subunit 4; TrEMBL-Plants: tr|A0A151RKX0|A0A151RKX0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0023200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:8109244..8111381) extracted from Lotus japonicus Gifu genome v1.2.
CCTTCTACTAAAGTTTGATTTTCTATATTTCATGGAAAATAAAATTGCATTTCTATTTTGCAGAAAAGGCTACTGAATTA CATATGACAATAAGTGTACTTCATCTCCAGATCTTTCTTTATTATGGCACCTGACCCTATAAATTCAAGCCGTCTTCAGT CTTTAACCTTTATAGTTTTCTAATGTAAAATTAGCACTCTCTTAAATTGTGAGTTTCTTTTGCTTTTTTAGAGATGTGAA CTCTGAGTGTCAAAATTGTTTCATGTTGAAGAAATTTATTGACTATTCATTTTGGTAGTTATCTGTTTGAGTGACTCTAT CTCATATATCCACAATGAGACATATGTTCAAAAGTTTCCTATGTATCCCACAATTAATTTTTTCGTTTGCAAATGACTTT TCAAGTCTATTATTTTGCACCTCATCTGGTCTTACCAATTACTAAAGCAAAATTCAAGAGCCTTTTATTATATTTGATCT ATGTATGATTCTGTAACTTCTACAGTTAGTGTTTCCATGTTCTGCATGTTTTTTTGCCCCTTTTTACTCTTACCAAACTG GAGCTATGTAAATAATGTGCCACATGAAGTATGTAAAAAGCTTACTTTTATAGTTTTAATAACTCTAATCACGCAGGTTG AAAAAATAAGATTCAATGTCCATCACTTCATTTGTTTTGGTTGGGATGAATTGTAATTTTTTTTGGAAATTCATTGAAGA CATTTGCATCAGTTAGTGTCTTCTAGGTGAGGTGGGAACAGGTCTGCAAGCCTAAAGAGGCGGGTGGATTAGGCGTGAAG GATTGGGTGAAATTCAATCTAGCCCTTTTAGGCAAATGGGAGTGGAAGTTACTATCAGGGAGCAACGATCTTTGCAGCAA AATTCTTTGGGCCAGATATGGTAATCGGGAAAAGGTTGGGAGACTTGACGCTCAACCTCGCGACTCTACCTGGTGGAAAG ACATATTCAAGTCTTGCTTTGACTCAGGTGATGGGGATTGTTGGTTTGATGGGCCTCTAAGCACAAAACTTGGCTGTGGA AATTCACTGTGCTTCTGGAAGGATAAGTGGTGTGGGGGATCTCCGCTCAAGAGCAACTTTCACAAATTGTTTCACTTGAC TACCCAGAAGAATGCTACTGTTAGGGATATGGTGGAGTGGGTGAATGGTGAGAAGATCTGGTCATTTACTTGGAGAAGAC AGCTGAGCTCGAGGGAATTGGCTTTGGTAGAAGAGCTTAAAAGGACAATTAATTGTATACCTCTTGTGGAAGGGACGCTG GATTCCTGGGAATGGATAACAAATTCTGAGAAGGTTTATTCTGTGCACCCGGCTTATAAACTGCTACAGGGACAGCAAGC GGAGAACGGGTAAACAACGCTCGGTAAAGTTTGGATTGTGACTTTGCTTGGAGGGTCTTGCTCGATCGGTTACCAACTAG GATGAACTTTTGGAAAAGAAAAATTATTGCTGATATCGCGGAAGCTATTTGCCCGCTGTGTAGAGAGGATTGTGAATTAG CGGACCACCTGTTTGTAACTTGCCCCTTTGCTGTTAAGGTTTGGAGTCTTTGCTATGGTTGGTTGGGTATCCTTACTGTT TTACCTGATAATTGCAGAATGCATATGCTGCAATTCTTTTTTCTGGGCCTAAATTCAAAGCAAAATGAGGTTTTCCGAGC AATCTGGCTTGCTGTTTCGTGGTCCCTGTGGCTGCATAGGAACCAGATCATTTTCAGATCAAGTGATATGTGCGAAAGGG AGGTGCTGGAGGCTGCAATTCTCAGGGTGTGGCATTGGGTTACAGGCAGGGGTAAAGGGAACACATGTCTCAGTTTATGA GTGGTTCTCACAACCACTGGTATGTATCAGAATGTTGGGGTAGCAAACTATTATTATTTCCAATTTGTGTTGTGGAATTG AAGGGTATGGAGGGAACGTATCTGGTTGGCTTTTGGTCTTTTCTTGATCAAATTGCTTTGCAAATTTAGGTAGTATTGTC TGTTTGCTCTTCTTCTCTTTATCTTGTCTTTTATTAGTTTTTTTAGTTCTTTTTTTGCTGTTGTCTTTTCCCTTCTTATT TGTACCATGGGTGGCACCCCTTGTGCCTTTCAATGTTACTTACTTTGGCTTATCAAAA
CDS sequence (LotjaGi2g1v0023200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTTTGGAAAAGAAAAATTATTGCTGATATCGCGGAAGCTATTTGCCCGCTGTGTAGAGAGGATTGTGAATTAGC GGACCACCTGTTTGTAACTTGCCCCTTTGCTGTTAAGGTTTGGAGTCTTTGCTATGGTTGGTTGGGTATCCTTACTGTTT TACCTGATAATTGCAGAATGCATATGCTGCAATTCTTTTTTCTGGGCCTAAATTCAAAGCAAAATGAGGTTTTCCGAGCA ATCTGGCTTGCTGTTTCGTGGTCCCTGTGGCTGCATAGGAACCAGATCATTTTCAGATCAAGTGATATGTGCGAAAGGGA GGTGCTGGAGGCTGCAATTCTCAGGGTGTGGCATTGGGTTACAGGCAGGGGTAAAGGGAACACATGTCTCAGTTTATGA
Protein sequence (LotjaGi2g1v0023200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFWKRKIIADIAEAICPLCREDCELADHLFVTCPFAVKVWSLCYGWLGILTVLPDNCRMHMLQFFFLGLNSKQNEVFRA IWLAVSWSLWLHRNQIIFRSSDMCEREVLEAAILRVWHWVTGRGKGNTCLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 5 | 41 | 37 | 2.8E-6 | ||
| PANTHER | 14 | 119 | 106 | 1.4E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0023200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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