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LotjaGi2g1v0054900.1

Overview

Field Value
Gene ID LotjaGi2g1v0054900
Transcript ID LotjaGi2g1v0054900.1
Lotus japonicus genome version Gifu v1.2
Description Allene-oxide cyclase; TAIR: AT3G25770.1 allene oxide cyclase 2; Swiss-Prot: sp|A2XID3|AOC_ORYSI Allene oxide cyclase, chloroplastic; TrEMBL-Plants: tr|I3SEB3|I3SEB3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0054900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:10941162..10943215) extracted from Lotus japonicus Gifu genome v1.2.

CAACATCTCAACAATCCTCAACAATCTTCGACACAAATTTTCAACAACCATTGTAAATGGTCTTATAAATATCCCCTTTA ATTTTTAAATATATTTCTCCATTTAGATGTTATGTGGCAATCCCCATCTTCAACCACAATACACGTTTTCCTTTTCTAAA ATTCTCTCTGTCCTATTTATACACTTGCACAGCACATTTCCCAGTGCACCATCCCTCACTTTGTCTGAGCGAGCACTTGT TTATTTGATCTGAATCTGATCATACCCTAAACCACATCATTAACAATCATGGCTTCCTCATGCTTCTCCTTGAGAACAGT AGCATCTTCCTGTCTGAAACTCTCCAACCTAAGAAGATCATCATTACTCTCAACCTCATCTATCACAACTTCATCAAACC CATTTCTCACTAGAAATCTCAAGCTAAACACCACTTTTTCACCACACTCTCACTCATCACTGTCCACCAGGTCTTTCACT TGTAGAAGCCAAGCTGAACAATCTGACTCAGGTAGTAGATAGATTATAATACAAATTTTGTTAATCTTCATGATGTTGAA GATTTGGTTGATTCTGTGTTGACCCTTTTGATTTCTGTGCTTGATCTTGCAGTCAAAGTTCAAGAACTGAGTGTCTATGA GATCAATGAGCGAGATCGTGGAAGCCCTGCTTACCTTCGGTTAAGTCAGAAAAGTGTCAACTCCCTTGGTGATCTAGTCC CCTTCAGCAACAAGGCTAGTTACATTTAATTTTTTAGATCTTTTGTTCTTATACTCACATTCAATTTTTGATCTGTTGTT AACTTTTCTATGAACTTCAGTTAATTAACATAGCAGCAAAAGTATGAAACTTTTAACCTCCTAAAGTTCCAATTTTGAGT CTTAACTTTGAAGTTTCTTTTTCTAGATTTTGTTCATATCTTCTGCTTATTTGATTCTTCCACTTTATTAGAATTTTGGT TAGGCCTAACTCTACCCCAAAAACTAGTTAAGGGAGATGATTGCTCTACCATTTATGAACACTTAATTGACCATATCTAT AGTAGTCAATGTGAGACTCCTCAACCAACTTTGTATGAATTTTCTTGTATTGAACTTTGTTTTGGCTATGGAACTTGCAG TTGTACTCTGGATGCTTGCAAAAACGTGTGGGGATAACAGCAGGGATCTGTGTTTTGATTGAAAACAAAGCAGAGAAGAA GGGGGATAGGTATGAAGCCATATACAGCTTCTACTTTGGGGACTATGGTCACATTTCTGTGCAGGGTCCTTACCTGACCT ATGAGGAATCTTATCTTGCTGTGACTGGTGGATCTGGCATCTTTGAAGGGGTGTATGGTCAGGTCAAGCTGAATCAAATT GTGTTCCCTTTCAAGCTATTCTACACATTTTATCTCAAGGGTATCAAGGACTTGCCCCAGGAGCTTCTTGCCAAGCCTGT TGAGCCCAGCCCAGCTGTTGAGCCCAGCCCAGCTGCTAAGGCCTGTGAGCCCCATGCTGTTGTTGCTGGTTTCACTGACT GAAATCACTGAATAATGAAAATGAGGGTTTTTTTGCCCCATGGTTATTGACTTATTAACATGTTTAGCTCAGTTTATTTT TTTTCCGGAAATCAATTTGTTGGGAATTGAGTGGCGCAGCGGAAAAATATTCACTTATGAGAACTGAACAACCTTCAAAG CAAATCCAAATAACCACAGAGGCAATAAAAATAAAGTAGAGACACGAAAATTTTAACGTGGAAAAACCTTCTCAATATGA GAAGTAAACAACCACAAAGTAATCCACTATAACAAAAATAATGGCTACATAACAATGTCCCACGACATCAAAAGCTTCAC CCAAAAAGGTGGAAATAAACCCCAAAATAAAAAGGAAAAACTACACCAATAAAAGGTGAAAATAGGATACAGTAAAAGAA CCCACAGCAAAAGAGTAAACTACCCAAACAACGGAGAAGAAAAATCCCAAATAAAACGGGTTAATATAAAGAGCTCACAG ACACGAAGGACATACTAAAAATTCATCCAAAACAGAGAACAAATGATGTACCGG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0054900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCTCATGCTTCTCCTTGAGAACAGTAGCATCTTCCTGTCTGAAACTCTCCAACCTAAGAAGATCATCATTACT CTCAACCTCATCTATCACAACTTCATCAAACCCATTTCTCACTAGAAATCTCAAGCTAAACACCACTTTTTCACCACACT CTCACTCATCACTGTCCACCAGGTCTTTCACTTGTAGAAGCCAAGCTGAACAATCTGACTCAGTCAAAGTTCAAGAACTG AGTGTCTATGAGATCAATGAGCGAGATCGTGGAAGCCCTGCTTACCTTCGGTTAAGTCAGAAAAGTGTCAACTCCCTTGG TGATCTAGTCCCCTTCAGCAACAAGTTGTACTCTGGATGCTTGCAAAAACGTGTGGGGATAACAGCAGGGATCTGTGTTT TGATTGAAAACAAAGCAGAGAAGAAGGGGGATAGGTATGAAGCCATATACAGCTTCTACTTTGGGGACTATGGTCACATT TCTGTGCAGGGTCCTTACCTGACCTATGAGGAATCTTATCTTGCTGTGACTGGTGGATCTGGCATCTTTGAAGGGGTGTA TGGTCAGGTCAAGCTGAATCAAATTGTGTTCCCTTTCAAGCTATTCTACACATTTTATCTCAAGGGTATCAAGGACTTGC CCCAGGAGCTTCTTGCCAAGCCTGTTGAGCCCAGCCCAGCTGTTGAGCCCAGCCCAGCTGCTAAGGCCTGTGAGCCCCAT GCTGTTGTTGCTGGTTTCACTGACTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0054900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSCFSLRTVASSCLKLSNLRRSSLLSTSSITTSSNPFLTRNLKLNTTFSPHSHSSLSTRSFTCRSQAEQSDSVKVQEL SVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYSGCLQKRVGITAGICVLIENKAEKKGDRYEAIYSFYFGDYGHI SVQGPYLTYEESYLAVTGGSGIFEGVYGQVKLNQIVFPFKLFYTFYLKGIKDLPQELLAKPVEPSPAVEPSPAAKACEPH AVVAGFTD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31843:SF6
1 248 248 1.4E-134 –
SignalP_GRAM_POSITIVE
SignalP-TM
1 14 14 - –
PANTHER
PTHR31843
1 248 248 1.4E-134
IPR009410
Gene3D
G3DSA:2.40.480.10
62 248 187 6.9E-94
IPR034871
Pfam
PF06351
75 246 172 9.9E-99
IPR009410
SUPERFAMILY
SSF141493
76 248 173 1.29E-88
IPR034871

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009695
Biological process Jasmonic acid biosynthetic process The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative.
Subterm of
GO:0016853
Molecular function Isomerase activity Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
Subterm of
GO:0046423
Molecular function Allene-oxide cyclase activity Catalysis of the reaction: (9Z,13S,15Z)-12,13-epoxyoctadeca-9,11,15-trienoate = (15Z)-12-oxophyto-10,15-dienoate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0054900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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