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LotjaGi2g1v0055800.2

Overview

Field Value
Gene ID LotjaGi2g1v0055800
Transcript ID LotjaGi2g1v0055800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Translation initiation factor eIF-2B subunit delta; TAIR: AT5G38640.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta; TrEMBL-Plants: tr|A0A0B2R8V3|A0A0B2R8V3_GLYSO Translation initiation factor eIF-2B subunit delta; Found in the gene: LotjaGi2g1v0055800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:11324991..11330109) extracted from Lotus japonicus Gifu genome v1.2.

ATTTAAGCTATCTGACTGAACGTTCTTTCATTGTTGGCATATCATCTACAGTTTTATGCTGATTTTATATTGTTATGCCT ATTTATACCTAGCTCCTTGTCAGGAATTCTTTTAACTGTTCATGGACTCGAATATTGTGTTTTCTAGTGATCCTATCAGG CCTAAATTGGTAATTTATGATGTTCTTTCAATGGTCTCTTTTCTGCATAACTCATCATGATGATACTAATTAGTTTCCTT TGAATAAAATGTGTCACTAGCTGAAGGAAATAAAGCATCTGGAACTACAACTGTGATGAATGCCAAACCAGCTAAAGCTG TAAAGTCTGCACAGAAAGTTGATAATGTAACAGTTGCAGCCTCTGAGAAGAAGGGGACTGATTGTCCACCAGAAAAGGAT AGAAAGAAAGATGCCCCTCAACCACGCATGCAGTATGATGACAAGAGCAGAGTGGAGAAAGCCAAACGCCGTGCTGTGGT GAAACAAACTGAAGCGAAGAACAGAGTAGAGTTGTTCAGGCACTTACCACAATATGAACACGGGAGTCAGCTTCCAGATC TTGAGGCGAAGTTTTTCCATCTTTATTCTGTACATCCTGCTGTTTACAAGGTACCTATGATATCCTTATTTGATTATTTT ATGATTCCTTATTTTTGTTGTTTGATTTATATACTACTGTTTTATTTTTACTTTTTGTTGTGATATATTTGATGTAATGT GTGTTTTCCTGAGTATTGCAATGCTCAAAGGCACCACGAATCTGATAGGCTGATGATTAAAAAGGCATATGTTAGGAGAA ATAGGCATGTCATAGGGGATAACACCCCACCTAACTGATTATAATTGTAACAGCTTGAGTTGTTAGCATTTTCTGTTATG AGAGGAGAGAGGGTGGGAATAGAGGATATAGAAAATCTGTTAGTATGGTAAGTCAATTTCTTAATTCTCCATTTGAAGGG CATTGGGATGCTATGATTCTCACACTGAAGTATATTTAAGGAGATCCAAAGAAAAGGTTTAGTTTATTGAAGACAAGGGT CATAGAGTTATAGGATACATAGATGCAGATTGGGCAGGATCTCCCTCTGATACGAGATCCACCTCTTGGTATTGTGATTT CATTGGTGTTAACTTAATCTCCTGGAAATTAAGAAACAAAGTCTGGTGGCAAGATCAACTCCAGAAGCAAAATATCGAGC CATCAGCCATGACTTCAACTACTTGTAAGTTGTAAGTTTATATGACTCAAACAATTGCTTCAAGACCTGAGACAGGGGTA TGTTTCACAGATGACTCTTATTTAAAACAACCATGCTGCCTTATATATTTCCTTAAATCCAGTTTTCCATGAAGATTGAC TGCCATGTTATTAGAGAGAGGGTTTCACATGGAGTTATCAACACTAGATTCGTCAATTCAAATAATCAGTTGGTTGATGT TTTCACTAAGTCTTTGAGAGCTCCTCGAGTTAATTATATTTGTAACAAGCTTGGTGCATATGAAATATAAGCTCCTGTCT GAGTGGGAGTGTTAGATATCTAGAATTTATTATTACTATTATTATTATTAGGTAACAAAATCATGTAAATCATATAAATA GGGAAACTAGGATATCATGAATTTTGGGTGCCTTATTATATATAACGATCTCTGTTCTGTAGTTTAAACACACTGATTCA CCCTAATGTTGTCTCTCGGTCTCACCTAATTTAACACTAACCTTATGAGCACTTGAGCAGTAAGACTAGAGTTAGAGAGG AGGGAAATTTATTATTCCTTTAAGAAACATGAAATTTTAAATCCCTTATTTTGGGTTAGGAAATTACCTATAAAATGTTG TGGTATTTTCAAATTCTGTTACTTAATGTCCATATAAGTATTCTGCATCAAAGTAATTTATAATCCTCTCAACAAATACA TTACATTGTTAAGAATAATTATCCAAACACACTTAACTTTTAAGTAAAAGAAATCTGCACAAATTGCTAGATGCAATTAT CAACTCCATTGGTGGATATTACTCCATTTTCAAGCATGATATACTATCTGGCAATCTGCAATGTAAGAAGTCGTATCTAA TGATATTGAAATAAAAGTAGGGGTTATATATGTTTATAGTCCCTATATGTTTTCAAAAAAAAATGTTTTTAGTCCCTATG ATATAGGGGTGAATCTAAATTAATCCCTAAAACAAATTAAATACCTTTTAGTCCTTATGATGTCCCAAAGTTTACATGAC TTTTCGTTTTTGCCAAGTGAGCTACATGGTAATCCTAGTTAGATGAAGGCTGTTCACATGGACTTTTTGTATCAGTTTTA GTCCCTACAATTTTTTTTCATCAACCTTCGTCCCTTCTTTTCCCCTTCCCTCAAACCCTAACCTACCTTCCGCGGCGGAG ACCATGGTTCCACCAACCCCCGTCGCCTTCTTTTCCCTCCACGTCGCCTCCCTTTTCCCCCACCTCCTCTGATGGTGTGA TAAAGTTGAAAGTGTGGAAGGACGTAGCAAAGGAATATCAAATTGATTGGTAAAGGGGAGAAGATAAGGTGGGGAGAGAA GATGGCTGCCGCAGCTGTGGAAGGTGGGCATAGGCTAGTGGAAGAGGAAGAAGGGAAAGAGAAGGGGCCGAGGTTGATGA ATTTTTTTTGCAAGGACTAAAGCTGATGCAAAAAGTCCATGTGGACAACCTTCATCTTACTAGGAGACCACATGGACTTG TGACTGGACAAAATTAAGCCATGTAAGCACTGTGACGTCATAATGACTTATTTCAAATAAAAAATTATTTAAGGACCAAA AGCTATGAAAAATTGGGGGATATTCACCCCTATATTACATGGACTAAAAACATATTTAACCCTAATAGTAAATTGTTTTA AAGGAGTGCTAGCAATACACTTTTGAACACACTCTGCCACACTCATTATGATTGGTTTATTTTTAAAAAACTCATCACAT TTGTTATCTTTTAATAAATGAATAAATCACATGGAGTGTGTTGAAGAATGTGTTCAAAAGAGTGTGTTGCTAGCATTTTT CATTGTATTTAGCATCCTATATTTGCACGAACATACCACCGTCGTGAGGCAAATAGTGATTATAACTGATTCATGTTGCT CTGGTGTATAGGACAGTGATTAGGAGCTAGGAGCTGGTTCAATATGTTTTCTTCTCAAATCTTATGGATCTTCATTGTGG TTGTCAGGTGGGTTTGCAGTACCTACTTGGAGATATATCTGGTGGAAATGCTCGTTGTATTGCAATGCTTCAAGCATTTC AAGAGGCCATCAAAGACTACTTGGTTCCACCCGAGAAGACTCTTGTACGAGACCTAACGGCAAAAATTAGTAGTTATGTA TCATTTCTTATTGAGTGTCGACCCCTGTCAATCAGCATGGGAAATGCAATCAGATATCTCAAAAGTCGAATAGCTAAGCT ACCTTTAACTGTATCCGAGTCGGAAGCAAAAACTTCTCTCCAGTCTGATATTGAGCGTTTTATAAGTGAGAAGATCATAC TTGCCAACAAGGTGATAGTCAAGCTTGCTGTCACTAAAATAAGAGATGGCGATGTTCTTCTAACTTATGGGTCATCATCA GCAATTGAAATGATTCTTTTGCACGCACATGAATTAGGAAAACAATTTCGTGTCGTGGTTGTTGACTCTCGTCCAAAGCT AAGAGGGAAACTTTTACTTCGCAAGCTTGTGGAGAAAGGTCTTAGCTGTACATACACTCATATAAATGCTGTTTCCTACA TAATGCATGAAGTTACTAGAGTTTTTCTGGGTGCTTCATCAGTCTTGTCTAACGGAACTGTATATTCAAGAGTTGGGACT GCATGTGTTGCAATGGTTGCTCATGCATTCCGTGTACCTGTCATAGTTTGTTGTGAGGCCTATAAATTTCATGAGAGAGT ACAGCTGGATTCAATATGCTCGAATGAACTCGGTATGTATATTTAACATTCATAATCATTCTTTAGTTCACAATTTACCA CTGGTCTTTTGGCTTGTGTCTGTAGTAGGCTGATGTTTCTACGATGTTTTTACAGGTGATCCAGATATCATTTCAAATGT GCTGGGTAGAGAGGATGTCAACTACTTGGATGGTTGGGCTGATATTGAAAATCTGCAACTTTTAAATCTGATGTAAGAAT TTACTGATAGAATCAAAGAACACCACATTGTCATTTCGTCACTCTAACCTTACAACACTTTATATTGATGGCAGTTATGA TGCGACTCCTTCAGATTATGTCTCAATGATAGTCACAGATTATGGCATGGTAAGTGCTGGAGTTTTAAAAAGTACTTGAA CATTTGCTGCTAAAACAATGCCTAAAGTGTGATTAATCCTGGCATCTCATCGCTTGCATTGTGTCTGACAGGGGTTTAGA TTGAAGTACTAAGTGCATAAAATTGTAGCTCCCTGTTTTTAGGAGAATCATTAGTGAGGATCAAGATACCAGTTTACGCT GCAAAAAAACCAAAAATTAAATAAATAGAAAAACAGTATTATTTTTAATAATTTCCGTATGCTTAAGTAAATAAGCAAAA GGAAATTATTGAAAAGTGAGTGGGACATTAGAAGAATAGAGGAGAAGAAACCATTTCATTCTGAACTAGTTAAATGCGTG TATTGTGACTTCTAAAAAATATCCTGTGTCCTATTGATATGATACATTTTTCCCTTTATGTTCTCAAAGGGCATCGTCCT TTCACACTTCTCCTTTGATAATACATCCCCTCACCCCACTGATAGAACACATTTTTTCCTTTACATTCTCAAGGCACTAT CCTTTCAATATTTTTCAGATTTGGATCATGATGGTTTGCACTGTATTTTGACTCGTATTTTTACTTTGGCAGGTTCCTCC CACAAGTGTGCCTGTAATTGTAAGAGAATATGGGAAAGAACAGGTCTGGATATAAAATGCAAATGTGAACTATCTCAATT TTGTGGCGCCAAAATCCTCTTTATGGACTGGGTAGTGACAACAAATTTTAAGATTGTTGTTATGCATGTTTTTGTACTAT TTTCTCACAGGAATTAATGTAATGTGTCTTTTTGTTCTAAAATTTTGGACATTTCTGTATTCACATGTCCTAGCGCAGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0055800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGCCAAACCAGCTAAAGCTGTAAAGTCTGCACAGAAAGTTGATAATGTAACAGTTGCAGCCTCTGAGAAGAAGGG GACTGATTGTCCACCAGAAAAGGATAGAAAGAAAGATGCCCCTCAACCACGCATGCAGTATGATGACAAGAGCAGAGTGG AGAAAGCCAAACGCCGTGCTGTGGTGAAACAAACTGAAGCGAAGAACAGAGTAGAGTTGTTCAGGCACTTACCACAATAT GAACACGGGAGTCAGCTTCCAGATCTTGAGGCGAAGTTTTTCCATCTTTATTCTGTACATCCTGCTGTTTACAAGGTGGG TTTGCAGTACCTACTTGGAGATATATCTGGTGGAAATGCTCGTTGTATTGCAATGCTTCAAGCATTTCAAGAGGCCATCA AAGACTACTTGGTTCCACCCGAGAAGACTCTTGTACGAGACCTAACGGCAAAAATTAGTAGTTATGTATCATTTCTTATT GAGTGTCGACCCCTGTCAATCAGCATGGGAAATGCAATCAGATATCTCAAAAGTCGAATAGCTAAGCTACCTTTAACTGT ATCCGAGTCGGAAGCAAAAACTTCTCTCCAGTCTGATATTGAGCGTTTTATAAGTGAGAAGATCATACTTGCCAACAAGG TGATAGTCAAGCTTGCTGTCACTAAAATAAGAGATGGCGATGTTCTTCTAACTTATGGGTCATCATCAGCAATTGAAATG ATTCTTTTGCACGCACATGAATTAGGAAAACAATTTCGTGTCGTGGTTGTTGACTCTCGTCCAAAGCTAAGAGGGAAACT TTTACTTCGCAAGCTTGTGGAGAAAGGTCTTAGCTGTACATACACTCATATAAATGCTGTTTCCTACATAATGCATGAAG TTACTAGAGTTTTTCTGGGTGCTTCATCAGTCTTGTCTAACGGAACTGTATATTCAAGAGTTGGGACTGCATGTGTTGCA ATGGTTGCTCATGCATTCCGTGTACCTGTCATAGTTTGTTGTGAGGCCTATAAATTTCATGAGAGAGTACAGCTGGATTC AATATGCTCGAATGAACTCGGTGATCCAGATATCATTTCAAATGTGCTGGGTAGAGAGGATGTCAACTACTTGGATGGTT GGGCTGATATTGAAAATCTGCAACTTTTAAATCTGATTTATGATGCGACTCCTTCAGATTATGTCTCAATGATAGTCACA GATTATGGCATGGTTCCTCCCACAAGTGTGCCTGTAATTGTAAGAGAATATGGGAAAGAACAGGTCTGGATATAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0055800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNAKPAKAVKSAQKVDNVTVAASEKKGTDCPPEKDRKKDAPQPRMQYDDKSRVEKAKRRAVVKQTEAKNRVELFRHLPQY EHGSQLPDLEAKFFHLYSVHPAVYKVGLQYLLGDISGGNARCIAMLQAFQEAIKDYLVPPEKTLVRDLTAKISSYVSFLI ECRPLSISMGNAIRYLKSRIAKLPLTVSESEAKTSLQSDIERFISEKIILANKVIVKLAVTKIRDGDVLLTYGSSSAIEM ILLHAHELGKQFRVVVVDSRPKLRGKLLLRKLVEKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTVYSRVGTACVA MVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGDPDIISNVLGREDVNYLDGWADIENLQLLNLIYDATPSDYVSMIVT DYGMVPPTSVPVIVREYGKEQVWI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 54 54 - –
PANTHER
PTHR10233
1 423 423 4.6E-295 –
PANTHER
PTHR10233:SF18
1 423 423 4.6E-295 –
MobiDBLite
mobidb-lite
27 54 28 - –
SUPERFAMILY
SSF100950
97 417 321 8.97E-91
IPR037171
Pfam
PF01008
115 407 293 1.2E-81
IPR000649
Gene3D
G3DSA:3.40.50.10470
218 418 201 4.5E-70
IPR042529

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0044237
Biological process Cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0055800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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