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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0059300 |
| Transcript ID | LotjaGi2g1v0059300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1262 family protein; TAIR: AT1G61600.1 DUF1262 family protein (DUF1262); Swiss-Prot: sp|Q9NUV7|SPTC3_HUMAN Serine palmitoyltransferase 3; TrEMBL-Plants: tr|A0A0L9VN56|A0A0L9VN56_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0059300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:12351031..12354072) extracted from Lotus japonicus Gifu genome v1.2.
CGCTAGCACATACTAGCATTAAAAGGAAGGTGGACAAGAAATGAAAGTAAAAGCATAGTTCTTTTTCTTTTGCTCTCTTT AATCTTTACCAATTCAAACGTGAAACAGCCCCATTGTTATACAAGCACGGTTGTGCAACTTGTTTCCACATTCCTGTTAA TAATTGAGACGTTATCCGTTCTTGAACTTTTTAATCTGCCTTATCATTTCCATGCCTTCATCAAGAAGAAACTGAAACTG ATAAATCCCCAATTGGTTTCAGTTTGATTAGTGGCTCTTAGACACTAAAGAAGGAGAAAAATAAAAGATGTATGTAACTA GGCCTTTGTCTATGTACAGAAGATCTCCAAGCACTTTGTCAATACCACCACCAGATGCTCCATATTCAGGTTATCTAGTT ATCACGGATGAGGAAGCGGAAGCCGAAGACGCGTGTTGTTGGCGTCTGTTCAGGCGTAAGAGAGTGAAGAAACTACCTTT CCCTCAGGACAAAATCTTCTCAATAACTCATGGATCAGAGTATGAACAAACTTCAAACACCAAGGTTTGGTTTCTCCCTG TGCCTGATCACCCTCTTTCTTCCAACCGCTACTATGTCATCAGAGCCAAAGGAAGAAACAAAGGGTATGTAAGTCAGTGA ATTGTGCTCCTGTTTTGTCCATATGGTCTCATAATTAAGCTCATGCTTATAGGGTTCTTAATTTCCAAGCCAGCCTTTTG TGCAAAGAACCACCTTGCTATTATTAATATCTATACTTCCACCACTAGCTTTCTTTTGGAATTTGGGTTGCGCTTAACTC TACCCCAAAAATTAGCTCAGAAGTAGAGCAATCTTCAGCCGATTATGGCTGTAGTTTTGCCTAACTCAAATTTAAGATAG TATCAAAGCATATTCTAAATTTGTTATTTGGTTAGCCATAAATGGGTCATGTGTACGTGTCTGGTCCTGACAACCGGGGT GTGTGTTAAGATCTCATATTGACTAAAGCCTGACAACCGGGATGTGTGTTAAGATCTCATATTGACTAAAGCAGTGTTGT CAAATAGTTGATAGCGACGCTATAGAGCTATAGCGTATCGCTTTGAGGGCTCACTGTTATCTATTATTTGCTACTATTTG TCCGCTATTTGCCGTCTAAGCGCTTGACATTGCAAATTTTTGGCTTTCCACTATTTTCCGCGATCCGCGATTAACAACAT TGAACTAATGATTTGGCTACAAAAGTTCTTTTAATTTTTGTGATGTCATGATTCTTAGTGGGGTAATGTTAGTGCACAAC ATTTTGTCGCAAATTATGTAACTTAACTACATATACATTATGGATTCAACTCATAATAGTTGAACTTCTTATGTTCTTTG TCAGACTTGGATGCAACCAATACATTTGTTATTGCACATTTTATGAGAAAAAAGTGTCAGTAAGACATGTGTTTTGTGCT CCAAACTTCAAAGTGAACTTATTGGTAGTCAATGATGGAACTATTGTGTTTTTGTAGGAAAGCATGCAAAAGCTCAAGAG AGGGGGACATAGTCAGTTGCTGCTTCACTGACCTCTTGAATGACAAAGGGCCAAAGCCTTTCAGTCTGAAAGACTTGTAC CAAATTTTCAAGATTCATAGCCACCAGAGTGGTGGCTTTTTTGCTAAGTCCATTGCTCCTGATGGAATTCCTCCCTCTTT CCTAAGGAAAAAAGGATGGAGAATTCAAATATCAGGCTCATATAAATCTTGCAGACTAAGGGAAGCTCTAGGTGTTGATG CCCCACTTAGGGAGAAGCTCCCAGATTTTAATTTTCCTATCTCTAGAAAAAATTCACCTCCTGTGGTTGTAGGAAACTGG TATTGTCCATTTATCTTTGTGAGGGAAGGATCAGCAAAAGCTAGACACCAAATGAAGAAGTCCATGTTTTACAGCATGAG ACTTGAGCAAAGGTGGGAAGAGATTTACTCTTGTGGCAGTGATGAAAGTGAAGGGGATGTTGATGTTGTGGTTGTGAATG TACTTGTGGAAAGAGAGGTCGTTAGGGTCTCTGGCATGGAAGCCTCAAAGAGTGGAAGAACTGATGCTAATGGTTTCTTC TGGTTTAGAGCATATAATCCATATACTAGAAGAAGGGCTAATGTGGGTTTAAGTTCAGCAATTTTTGAACACATGAGATG GGTGGAAGAGCAAGGAGGTTGGGCTCATGGCCATGGGAAAGAAAGGATGGTAAGAGTGAGAGAAGAGGTAAGGAGCCAGA CTCAGTGGGTGAGGTTTGGGTGTTATGTGTTGGTGGAGAGCTTCTGCCTTAGGACACTGGATGGGAAATTGGTGTTGAGA TATGACTTTAGGCACACCCACCATGTAAAATTCAAATGGGAGTAAGGAAAAAAGATTAACTCGCCGTAGTTAACTCAATT CAAGCTAGAAATATTCACATTATGATGGGGTTAGCTCTCCCAACAGAATTTATTTCAGTCACAAGACTCAAACTTATGCC TTGTAGCATGTCCTATTTGAACTAACCACTTGTTGGTGATACTATTGTGGTTCGCAAATGAATTTATATGCTCTCTTGAT CTTCTGTGTATTTGATAATGAAAAGCAGCTTAATTTCAAATGTACTACACATGCAATTCTACTACATATGCAATTCTTGT GACAATTTATAACTGATGATAGTTGAGAGTTGAGAACTAGAAGTTATTCAAATGTAAACATAGAATCAGGCTTAATTTTG AGTCCTATAATTTAAATGGTGTGGCTGTGACCGGTCCCCTGATTTTTTCTATCCATTTTAATCCCTATAATACTAAAATC AAGCTAATTTGGTTCATTTGTCAATTTTCATATAATAAAATTCTTAATTCTTCAGTTCATATTCGAATATCTTGGGGATA ATGGTAGATTGTAAATACTATATAAATTTAAAAGTGCTAAAGTAAAAAATTTAGTGAAAATTTGATGAATTTTATAAGAA GGATGACTGCATTAATGAAGGGATGCTTCGTTAGACCGCTCATCTCTAGAAAGGACTTCGTCTACTCGTATTCAAGTGAG CG
CDS sequence (LotjaGi2g1v0059300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTAACTAGGCCTTTGTCTATGTACAGAAGATCTCCAAGCACTTTGTCAATACCACCACCAGATGCTCCATATTC AGGTTATCTAGTTATCACGGATGAGGAAGCGGAAGCCGAAGACGCGTGTTGTTGGCGTCTGTTCAGGCGTAAGAGAGTGA AGAAACTACCTTTCCCTCAGGACAAAATCTTCTCAATAACTCATGGATCAGAGTATGAACAAACTTCAAACACCAAGGTT TGGTTTCTCCCTGTGCCTGATCACCCTCTTTCTTCCAACCGCTACTATGTCATCAGAGCCAAAGGAAGAAACAAAGGGAA AGCATGCAAAAGCTCAAGAGAGGGGGACATAGTCAGTTGCTGCTTCACTGACCTCTTGAATGACAAAGGGCCAAAGCCTT TCAGTCTGAAAGACTTGTACCAAATTTTCAAGATTCATAGCCACCAGAGTGGTGGCTTTTTTGCTAAGTCCATTGCTCCT GATGGAATTCCTCCCTCTTTCCTAAGGAAAAAAGGATGGAGAATTCAAATATCAGGCTCATATAAATCTTGCAGACTAAG GGAAGCTCTAGGTGTTGATGCCCCACTTAGGGAGAAGCTCCCAGATTTTAATTTTCCTATCTCTAGAAAAAATTCACCTC CTGTGGTTGTAGGAAACTGGTATTGTCCATTTATCTTTGTGAGGGAAGGATCAGCAAAAGCTAGACACCAAATGAAGAAG TCCATGTTTTACAGCATGAGACTTGAGCAAAGGTGGGAAGAGATTTACTCTTGTGGCAGTGATGAAAGTGAAGGGGATGT TGATGTTGTGGTTGTGAATGTACTTGTGGAAAGAGAGGTCGTTAGGGTCTCTGGCATGGAAGCCTCAAAGAGTGGAAGAA CTGATGCTAATGGTTTCTTCTGGTTTAGAGCATATAATCCATATACTAGAAGAAGGGCTAATGTGGGTTTAAGTTCAGCA ATTTTTGAACACATGAGATGGGTGGAAGAGCAAGGAGGTTGGGCTCATGGCCATGGGAAAGAAAGGATGGTAAGAGTGAG AGAAGAGGTAAGGAGCCAGACTCAGTGGGTGAGGTTTGGGTGTTATGTGTTGGTGGAGAGCTTCTGCCTTAGGACACTGG ATGGGAAATTGGTGTTGAGATATGACTTTAGGCACACCCACCATGTAAAATTCAAATGGGAGTAA
Protein sequence (LotjaGi2g1v0059300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVTRPLSMYRRSPSTLSIPPPDAPYSGYLVITDEEAEAEDACCWRLFRRKRVKKLPFPQDKIFSITHGSEYEQTSNTKV WFLPVPDHPLSSNRYYVIRAKGRNKGKACKSSREGDIVSCCFTDLLNDKGPKPFSLKDLYQIFKIHSHQSGGFFAKSIAP DGIPPSFLRKKGWRIQISGSYKSCRLREALGVDAPLREKLPDFNFPISRKNSPPVVVGNWYCPFIFVREGSAKARHQMKK SMFYSMRLEQRWEEIYSCGSDESEGDVDVVVVNVLVEREVVRVSGMEASKSGRTDANGFFWFRAYNPYTRRRANVGLSSA IFEHMRWVEEQGGWAHGHGKERMVRVREEVRSQTQWVRFGCYVLVESFCLRTLDGKLVLRYDFRHTHHVKFKWE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 394 | 394 | 2.4E-188 | – | |
| PANTHER | 1 | 394 | 394 | 2.4E-188 | – | |
| Pfam | 24 | 122 | 99 | 1.2E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0059300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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