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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0066700 |
Transcript ID | LotjaGi2g1v0066700.7 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT2G01630.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3; TrEMBL-Plants: tr|A0A072VG45|A0A072VG45_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi2g1v0066700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:15630470..15631956) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTATTGGGTGCTTTAATTGTCAAAAGTCCTTCACTTTTGGTCGTTTTTTACTGCAGATGCTTTTATCGGTGTCAAC ATTGGTACAGATGTCACTAACATGCCATGTCCAACTGAGGTTGTGGCCCTTCTTAAGGTCCAAAGCATCCAACATGTCAG ACTCTATGACGCTGACCGAAACATGCTTCTCGCACTTGCCAAGACAGGAATCAGTGTAATTGTTTCTGTTCCCAATGATG AAATCCTCGGCATTGGCCAGTCCAACACCACGGCCGCCAATTGGGTTGCTCGTAACGTTGTAGCTCATGTCCCAGCCACT AACATCACTGCCATAGCGGTCGGATCTGAAGTCTTAACAACACTGCCAAATGCAGCCCCTGTCCTTGTCTCCGCTCTGAA ATTCATCCAATCCGCTCTTGTTGCAGCTAATCTGGACGACCAAATCAAGGTCTCCACCCCACACTCTTCTTCTGTCATCC TCGACTCCTTCCCGCCTTCTCAGGCGTTTTTCAACCGCACTTGGAACCCCGTCATGGTTCCCTTGCTTCAATTTCTGCAG TCAACAGGTTCATATCTTATGCTCAATGTGTACCCTTATTATGATTACAGGCTATCAAATGATGTGATTCCTCTGGATTA CGCTCTGTTCCGTCCCCTGCCTTCGAATAAGGAAGCTGTTGATACCAACACTCTCCTGCATTATACTAATGTCTTTGATG CAGTTGTTGATGCTGCTTATTTTGCAATGTCATATTTAAATTTCACCAATATCCCTATTCTAGTCACTGAGTCAGGATGG CCCTCCAAAGGTGACTCGTCCGAGCCAGACACAACTCCTGATAATGCGAACACTTACAATAGTAACTTGATCAGGCATGT CCTTAACAACACGGGGACTCCAAAGAAACCGGGAGTTTCTGTTAGCACGTATATTTATGAGCTTTATAACGAAGACTTAA GATCTGGTCCGGTCTCTGAGAACAACTGGGGGTTATTTTATGCTAATGGAGCACCAGTATATACCTTGCACTTGAGTGGT GCTGGTACTATATTTGCAAACGACACGACGAACCAAACCTTTTGCGTTGCCAAGAATAATGCCGATACTAAGATGCTTCA GGCTGCGCTTGATTGGGCTTGTGGACCTGGGAAGGTGGATTGCTCGCCTTTGCTGCAGGGTCAACCGTGTTATGAACCGG ATAATGTTATTTCACATGCTACGTATGCTTTCAATGCGTATTATCAGCTGATGGATAAATCTTCTGGTACTTGTGATTTC AAAGGGGTTGCCTCTGTCACCACCACAAACCCAAGTAAGAAATCTTTACATTTTATAAATATCTACAAGTTAAGTTGACT ACAAAAGAATAAAAATAGTGGTATTCAACTATCCTCGTTGATCAGATTGTTTCTCAAAACTATCTGTTGAAATTATACAT TTATATGCCAATTTTATATGTTTATTATTATTACTATTACTTTTTAA
CDS sequence (LotjaGi2g1v0066700.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATGTCCAACTGAGGTTGTGGCCCTTCTTAAGGTCCAAAGCATCCAACATGTCAGACTCTATGACGCTGACCGAAA CATGCTTCTCGCACTTGCCAAGACAGGAATCAGTGTAATTGTTTCTGTTCCCAATGATGAAATCCTCGGCATTGGCCAGT CCAACACCACGGCCGCCAATTGGGTTGCTCGTAACGTTGTAGCTCATGTCCCAGCCACTAACATCACTGCCATAGCGGTC GGATCTGAAGTCTTAACAACACTGCCAAATGCAGCCCCTGTCCTTGTCTCCGCTCTGAAATTCATCCAATCCGCTCTTGT TGCAGCTAATCTGGACGACCAAATCAAGGTCTCCACCCCACACTCTTCTTCTGTCATCCTCGACTCCTTCCCGCCTTCTC AGGCGTTTTTCAACCGCACTTGGAACCCCGTCATGGTTCCCTTGCTTCAATTTCTGCAGTCAACAGGTTCATATCTTATG CTCAATGTGTACCCTTATTATGATTACAGGCTATCAAATGATGTGATTCCTCTGGATTACGCTCTGTTCCGTCCCCTGCC TTCGAATAAGGAAGCTGTTGATACCAACACTCTCCTGCATTATACTAATGTCTTTGATGCAGTTGTTGATGCTGCTTATT TTGCAATGTCATATTTAAATTTCACCAATATCCCTATTCTAGTCACTGAGTCAGGATGGCCCTCCAAAGGTGACTCGTCC GAGCCAGACACAACTCCTGATAATGCGAACACTTACAATAGTAACTTGATCAGGCATGTCCTTAACAACACGGGGACTCC AAAGAAACCGGGAGTTTCTGTTAGCACGTATATTTATGAGCTTTATAACGAAGACTTAAGATCTGGTCCGGTCTCTGAGA ACAACTGGGGGTTATTTTATGCTAATGGAGCACCAGTATATACCTTGCACTTGAGTGGTGCTGGTACTATATTTGCAAAC GACACGACGAACCAAACCTTTTGCGTTGCCAAGAATAATGCCGATACTAAGATGCTTCAGGCTGCGCTTGATTGGGCTTG TGGACCTGGGAAGGTGGATTGCTCGCCTTTGCTGCAGGGTCAACCGTGTTATGAACCGGATAATGTTATTTCACATGCTA CGTATGCTTTCAATGCGTATTATCAGCTGATGGATAAATCTTCTGGTACTTGTGATTTCAAAGGGGTTGCCTCTGTCACC ACCACAAACCCAAGTAAGAAATCTTTACATTTTATAAATATCTACAAGTTAAGTTGA
Protein sequence (LotjaGi2g1v0066700.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPCPTEVVALLKVQSIQHVRLYDADRNMLLALAKTGISVIVSVPNDEILGIGQSNTTAANWVARNVVAHVPATNITAIAV GSEVLTTLPNAAPVLVSALKFIQSALVAANLDDQIKVSTPHSSSVILDSFPPSQAFFNRTWNPVMVPLLQFLQSTGSYLM LNVYPYYDYRLSNDVIPLDYALFRPLPSNKEAVDTNTLLHYTNVFDAVVDAAYFAMSYLNFTNIPILVTESGWPSKGDSS EPDTTPDNANTYNSNLIRHVLNNTGTPKKPGVSVSTYIYELYNEDLRSGPVSENNWGLFYANGAPVYTLHLSGAGTIFAN DTTNQTFCVAKNNADTKMLQAALDWACGPGKVDCSPLLQGQPCYEPDNVISHATYAFNAYYQLMDKSSGTCDFKGVASVT TTNPSKKSLHFINIYKLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 411 | 411 | 4.6E-257 | – | |
Gene3D | 1 | 311 | 311 | 2.1E-114 | – | |
PANTHER | 1 | 411 | 411 | 4.6E-257 | – | |
Pfam | 2 | 310 | 309 | 3.8E-74 | ||
SUPERFAMILY | 4 | 310 | 307 | 7.25E-82 | ||
ProSitePatterns | 224 | 237 | 14 | - | ||
SMART | 326 | 411 | 86 | 8.8E-44 | ||
Pfam | 327 | 397 | 71 | 2.0E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0066700.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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