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LotjaGi2g1v0069900.1

Overview

Field Value
Gene ID LotjaGi2g1v0069900
Transcript ID LotjaGi2g1v0069900.1
Lotus japonicus genome version Gifu v1.2
Description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; TAIR: AT1G06650.2 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3; TrEMBL-Plants: tr|V7C556|V7C556_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0069900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:17021980..17026247) extracted from Lotus japonicus Gifu genome v1.2.

CTTCAGATCTTCTGAAGCTTTTCTACTGTTCAGATTGAACATAGAGTTTGCGAAAGCGTTGCTTGGGTCACTCTTTAAGC ACATTGCTTCTGATTTGTGTGAGATTGGATTAAGGTCAGAGCCTGTAAAAGCACACTCAGAAAAACACGTAAGAGTACCA TAATTGTTCATACTAAAATGTTAACTTGTAATCAACAAAACATAGAGTTGTACTACTCGATCAAAACTTGATCTTACAGT TTCCCTCCCAAATCTGACCAAATTTCACATTGGTTCGTTTACGAGCCAAAACACTGTTGGGTGAGTTTCTTGACCCCATA TCAATATTACAGTCAAAATTCACCAAATTACGCGTAGATCATCATAATTATAAGAAAAATATATATTCAACCCTCGAATA ATAATTCGAAGGCAAAATAGTGCTCTGAGCTAAAACGCATCGGTTTGACCGATTTTCAAAGTGCATCCAAATTCTCCGAC GAACAAAGAATGAAAAACTTGAAAAATAACACATTTGATTAAAAGGAGATTGTTGTGGTCATGGGAAGTCTGATTGTTGT TTTGATGTTGAGCAAATTCCCCCTCCCACATGCAATTTTTGCTGAATGATGCCTCTCGGGTTGCATCCCTAAGAGTAGTG TAGTTTATCTTTTCTGAGTGGTGTGCAAAGACCAAAGGGATGACAGTGTACTTGTGTCTGTATATCCTTTTTGACTAAAT GAATTGGATAACACGTAACTAATACCTTGATAAATTACAACTACTTTGATACAAGACACGTAACTAAACAACGACTTATA TAATGTACCAAAAGAGCAAAAAATATTAGTATTACCAGTCAGAAGTGAATTGATATAGTTGTCGTTGCATATTCACCGTG TTCATTCTTCCAACTCCAAACGAATCACCACACGCAAACACTTCCCAATGTCTTCACCGTCGCTGGCCACCGTCTCCGCC GTCTCCAACTCAACTCCGCCGTTCGACCGCGCCAAAGCCGTCAAGGAATTCGACGAGTCCAAGACCGGAGTCAAGGGCCT CATCGATTCCGGAATCAAGACCATCCCCTCTTTCTTCGTTCACCCGCCAGAAACCCTCTCCGACCTCAAACCCCGACCCG AATCCGATTCCAAACCCGAAATCCCAACCATCGACCTCGCCGCCGTGAACGAATCCCGCGCCGCTGTTGTGGATCAGATC CGCCGTGCGGCGAGCAGTGTTGGATTCTTCCAGGTGGTTAACCACGGCGTCCCGCTGGACCTCCTCCGCCGCACTGTTGC CGCCATCAAGGCGTTTCACGAGCAGCCGGAGGAGGAGAGGGCGCGGGTGTACACTAGGGAAATGGGCACGGGAGTGTCGT ACATATCCAACGTGGATCTCTTCCAGTCAAAAGCTGCCAGCTGGCGCGACACACTGCAGCTTAGGATGGGGCCGACCGCA GTTGATCAAAGCATGATTCCAGAAGGTAGCAATTCTATTTATTTGTGGCATTTTTTTTCTTCTTTTGTCTTTGTTCGGAA CTGGTCAATTCCGTTGGGAAAGTGTATTGGACTCTATCCACAAATGATTTTAGAAATCATCATTCAAAACACAACACGTT TCTGTGTTCAATCTTTTGATTGAGTTTGCAATTGAAAATGTTTTTAAACTTAAGATTTGTGCCTTTTTAGGTTAATTGTA TGAATTTAATAACTAATTCAAGTTTAAACATGTACGTTGATGTAGTGGTTCCCTTAAGCTAGCGTAGAGTTCGATTCTTA ATTTTTGTAAATGAAAAAAACTCCTTAGTAAGCCTCTTTAGTCACTCTTATTGAATATGTGTTTGATTGCGGTTTTAGTT TTCGCTATTTAAAGATAGTTATTAAATTATTTTTTTGAAAACTGTTTTCCATAGGAATAGAAGAAAAAGACTGCTTAAAA GAGATGCTTTTTAACATTAAAAAGATTATAATTTTGAAAACTAAAATCTGATACAGAAAACATCTCTAATTCTTCTAATG AATAATTTTCAAAAGCTATAATCAAACAAGCCATTAGTTTGTGAGATATCTTGGTTAAGAAGGAAAAAAAACTAATTTGA GTTTAATATAAATTAAGTTCTTATTCTATATTAATTTGTGTGTTGTGTTATAATTTAATTTTTTTTTGATTGAGTGTTAT AATTTAATTTATTATCTTAAAAAATTAATTTTTTATATTCTTGGTGACTTATATTCTCATGCACGACATATAAAACATAA TTTGTATTTATATAATATGCATGTTGGTGAATGTGACTGAAGTTTGCAGGCAGGAGGTGATGGAGTGGGACAAGGAAGTG GTGCGGGTGGGAGAAGTTTTGTATGGTTTGCTAAGTGAAGGGTTGGGATTAGATGCGGGAAGGCTCAGCGAGATGGGTTT GGTGCAAGGGAGGGTGATGGTGGGTCACTATTACCCCTTTTGCCCTCAGCCTGATCTAACGGTGGGACTCAATTCTCATG CGGATCCAGGGGCGCTTACGGTGGTGCTGCAGGATCATATTGGTGGGTTGCAGGTTAGGACCACAGAGGGGTGGGTTGAT GTCAAGCCTCTGGATGGAGCTTTGGTTATTAACATTGGAGATTTACTTCAGGTCACATATTTTCTTTCCCTCTATTTTAT TTTCTTCTAGTTTTCAAAATTCTGAATGGAATAAAGACATGACAAAAGGAATAAATGTGTGTTTAGATGCCAATTGAACT AACTTTCATCCCAGTTCACCAGAAGAGTTCTGTTACTTTCTTTTATCTCAAAGTACTTGCTAAAATTCATTTGCTTGATG TCAATGGATTTCCAAACCATATCTTAAGTGCCCATTTGGTTTAACACAATTGGGGCGGAAAATACTCATCCTAGTTCACT AGCAGATAAGCAAGATTTTGACACTTTAACTCAAGTGTTATCGATATTGAGTTCAATGGAAATCTATAAGTGTTGATGGA ATGTAATGTTTGGGAAATAAATGTCTATAGGTTACTCTTTTTTAACTAGTAAATTAATCTTCAAAAATAAAATGTCAGTC ATGTCAGATTTTGAATAATATAAATTTTGCTAAAGGTTTCTGAATGATATTTTAGCAATCAAATCTATCTCTGAGCATGC ATTTGATCGGTTAAATTAGTTTTTAAAATGTTAGTGAAAGACTAATTTGATTGATCACATGTGAAAAAACTAATTTCTGT TGTGTAGGAACTAATATAATAACTAAAACTTTACTTCTTTTAAGAGAATGATCTTACTTTGTACTCCTTGTTAACCTTAT AGTGAATAATAACGATTTCTTAGTTATAGAATATTGTCCTATTTTAGCACTGTTAGTTTTGCCTGTTTGTCATTTGCTTC CAAATGTTCTATTGCACTCAAGACACAGAAATAGAATACAGAGCACGTTTGGGATTTGTTTTGGGCTGGGGATGACTTAC TATCCAAACATATTTCTAGAATAATTTACTTCTGTTTTCTGTTGAAGTCCCAAATTGATTAGAGATATAGCTAAATTAGT CCTTATTAATGGTAGGGGCAACCCTCAACCCTAATCTAGCTTTTGCGATAAAGTTATAGGTCTAACCCGAATTCTAGTAA CCTACGGCTAAATTACCTTAACAAGTTATATGAAATGTTTTACAATCCTAACCTTTTATCATTTGGATTTCTCATGTCCA TCACTTTGTGTCTCAGATAATTTCTAACGAGGAATATAAGAGTGCTGATCATAGGGTGTTAGCCAATTCTGCTAATGAGC CACGAGTCTCGGTGGCTGTTTTCCTCAACCCGGGTAACAGGGAGAAGCTGTTTGGACCTTTGCCAGAGCTAACATCAGCA GAGAAGCCAGCTCTTTATAGGAATTTCACTCTCGATGAATTCCTGACCAGATTCTTCAAGAAAGAGCTGGATGGTAAGTC ATTGACAAATTACTTCAGGCAGTGATGTTCATACAGCTATTGCTGGGTTATATTTGTAAAAAGTCAAGTATATTGTAAAA GTACATTTGTTGCTAGTAATAAAACAATGCAAGGGTTCTAACATGGGTGTGTATGGAAAACTAAAATTGTTGTTAGACGT CATATCCACTTTTGTAATCTTTGTCTCGAAAGGGATTCTAGAACAATGTTTTTCTTTTGTCAATTCTAGAACAATGTTTT AAAAGCTGGAATGTCATTGAACCGATGAGTGCATTGATTCATGATTTATCGGTTCATTCATAATCGAACCTAGCCGAACA GAAATATTTAAATATATCTTTTGAAGGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0069900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTTCACCGTCGCTGGCCACCGTCTCCGCCGTCTCCAACTCAACTCCGCCGTTCGACCGCGCCAAAGCCGTCAAGGA ATTCGACGAGTCCAAGACCGGAGTCAAGGGCCTCATCGATTCCGGAATCAAGACCATCCCCTCTTTCTTCGTTCACCCGC CAGAAACCCTCTCCGACCTCAAACCCCGACCCGAATCCGATTCCAAACCCGAAATCCCAACCATCGACCTCGCCGCCGTG AACGAATCCCGCGCCGCTGTTGTGGATCAGATCCGCCGTGCGGCGAGCAGTGTTGGATTCTTCCAGGTGGTTAACCACGG CGTCCCGCTGGACCTCCTCCGCCGCACTGTTGCCGCCATCAAGGCGTTTCACGAGCAGCCGGAGGAGGAGAGGGCGCGGG TGTACACTAGGGAAATGGGCACGGGAGTGTCGTACATATCCAACGTGGATCTCTTCCAGTCAAAAGCTGCCAGCTGGCGC GACACACTGCAGCTTAGGATGGGGCCGACCGCAGTTGATCAAAGCATGATTCCAGAAGTTTGCAGGCAGGAGGTGATGGA GTGGGACAAGGAAGTGGTGCGGGTGGGAGAAGTTTTGTATGGTTTGCTAAGTGAAGGGTTGGGATTAGATGCGGGAAGGC TCAGCGAGATGGGTTTGGTGCAAGGGAGGGTGATGGTGGGTCACTATTACCCCTTTTGCCCTCAGCCTGATCTAACGGTG GGACTCAATTCTCATGCGGATCCAGGGGCGCTTACGGTGGTGCTGCAGGATCATATTGGTGGGTTGCAGGTTAGGACCAC AGAGGGGTGGGTTGATGTCAAGCCTCTGGATGGAGCTTTGGTTATTAACATTGGAGATTTACTTCAGATAATTTCTAACG AGGAATATAAGAGTGCTGATCATAGGGTGTTAGCCAATTCTGCTAATGAGCCACGAGTCTCGGTGGCTGTTTTCCTCAAC CCGGGTAACAGGGAGAAGCTGTTTGGACCTTTGCCAGAGCTAACATCAGCAGAGAAGCCAGCTCTTTATAGGAATTTCAC TCTCGATGAATTCCTGACCAGATTCTTCAAGAAAGAGCTGGATGGTAAGTCATTGACAAATTACTTCAGGCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0069900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSPSLATVSAVSNSTPPFDRAKAVKEFDESKTGVKGLIDSGIKTIPSFFVHPPETLSDLKPRPESDSKPEIPTIDLAAV NESRAAVVDQIRRAASSVGFFQVVNHGVPLDLLRRTVAAIKAFHEQPEEERARVYTREMGTGVSYISNVDLFQSKAASWR DTLQLRMGPTAVDQSMIPEVCRQEVMEWDKEVVRVGEVLYGLLSEGLGLDAGRLSEMGLVQGRVMVGHYYPFCPQPDLTV GLNSHADPGALTVVLQDHIGGLQVRTTEGWVDVKPLDGALVINIGDLLQIISNEEYKSADHRVLANSANEPRVSVAVFLN PGNREKLFGPLPELTSAEKPALYRNFTLDEFLTRFFKKELDGKSLTNYFRQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10209
10 355 346 2.9E-131 –
PANTHER
PTHR10209:SF509
10 355 346 2.9E-131 –
Gene3D
G3DSA:2.60.120.330
25 354 330 1.5E-101
IPR027443
SUPERFAMILY
SSF51197
32 363 332 3.57E-91 –
Pfam
PF14226
72 168 97 1.7E-19
IPR026992
ProSiteProfiles
PS51471
221 321 101 11.956
IPR005123
Pfam
PF03171
224 321 98 2.6E-24
IPR005123

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0069900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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