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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0073400 |
| Transcript ID | LotjaGi2g1v0073400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translin family protein; TAIR: AT2G03780.1 Translin family protein; Swiss-Prot: sp|Q99598|TSNAX_HUMAN Translin-associated protein X; TrEMBL-Plants: tr|I3SA77|I3SA77_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0073400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:18805493..18809488) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCTTCTTTTCTGAAATTTCATTGCGAGGTAGTTAATTGTCAAAATCAATGAGAAATTAGGTTAAGGGTTAATCTTTT TTTTTTCAAGCTATGAATCAATGTTAGTTTCAGTTCCTAATTTGGAGTGCATTGCATTCTTCCCCTTTTAAGAGTTGTGT TTTGTAATATGTAGAAACATAGTTTACAATATTTGAATTTTTTAAGTGATGAGTAAGCTTACAATATGGTGGTTGCATAC TAGTTCATGATATTAGTTGTATGTTGAGACTTTTTAACCTTCAATTTTGTAGAATGAGAAACGAGAAAGAGTGGTCAAAG CGAGTCGTGATGTAACAATGAATAGCAAAAAGGTCATATTTCAAGTGCACAGGTAACCTAGCGCATTTCCGCTCCCGTCT CTCTCTGTTTGTAAAATGATTTTTGCTTGGATTAGTTTCTCCTTCCAAATTTATCTGTACTTTAATTAGTCATCTGAATC AACTTAGTTTATATCTTGAAACGTATGTACTGTGATGTGTTAATTTTCTATTATGGTAAGCGAATCTTAATTGCTTTACG CTCACTTTCAAAATTTATACTTCATCCTTCCCCCTCTCCGTTAAAAATTTGAGAGGAGAATGAGTAAGAAGAGCTTCCTA TCTAAATTGATACTTTTTTTGTAAACAATGGTAAAATAAAAAGAAATGGGTCCAAATTCTACTCCTGATGTGTAAATGAT TTATTGTTACATGTGATCTTGATCATCCTGGGCTTACTGGCTTTACCATATTCTAATTTTTTAACAAGGATGAGTAAATA CAATAAATTGGAGGTGCTTGAGAAAGCAGAAAAGGATTTAGCAGCTGTGAGAGATCAGCACATATCACGACTAGTCCGAG AATTACAGGGAACAGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGGGTATACCTTCTGTTAGCACTTTGTTTGATA TCAAATACTTTTCTCTGATACTTGTCTTGGGTGTTTGCAGATACAGGAGTATGTCGAAGCAGCTACATTCTGCAGTTTCT GTACAAGTGGAACTCTTTTGAAGCTTGATGAGATAAATAACACATTGTTACCACTTAGTGATTCTTCCCTTCAGCCTCTG CAGATAAACATCCTGGACTATCTATTAGGGGTGGATTTTTTTCTTTTTTTTTTAGTTACCTTTTTCAGCATTTTAGTTAT GTTGTTGATAGTAGATAACAATCAATTAAATAAGACTCAATTCAATAGATTCTTAAGTTCTTCATTTGTTGTAATGTTCT CTGCAATCCTATTTACCCCTAATTACGTTTTAGTATCTTTATATGAAGATGAAGCAATCATGCAACTTAATTCTGCCTTT TCTCCCCCTTCCTTGAAAAGGTGCTCAATATTCTTTTACAGCTTGCAGATTTGACCGGAGAGCTGATGCGCTTGGCAATT GGTCGGATTTCTGATGGTGAAATTCAATTTGCTGAGAAGATATGCAGATTTGTACGTGATATATACAGGGAGCTTACACT TGTAGTGCCACATATGGATGATAGTTCTGATATGAAAACAAAGATGGATGTAATGCTCCAAAGTGTCATGAAAATAGAGA ATGGTAATGTATTGACTCTCAAAATTTTGTTTGCAAGACTAATATTTCTATCTAGACTGTTGATGTTAGGTAACATCCCT TAGTTAGTGAGAGTCGTTAGTCGGAGTCGTTAGTCATTAAAGGAGTTGGTTAGAGAGTGAGAGATGATAGACTAAGAAGA TCCCATAGAGCTTTCTTTGGTTTGGTAAGGAATTAGAGCGGAAGAAAGCCAGGTCTATTATATACCTAACCTGAGGTGTA GGTGTAGCAGAGATTTCTTGTCAATAAACACGGTTTTCTTTCAACGTTTTGAACCAATTCTAATAACCGTTATTCAGAGT TATCAATCCCAAATAGCGGCATGTAGCTGCTGACAAAAAATGCTATAGCGAAGGGTGCATAGAGAAATGACCGCAGACCG CTATACTAAAATTTTAGATATAGGTCAAGTTGTTTACACAATACAAAAATAAATGCTAAAAGATTAAAAAATATTGCTAA AATTTTGAGACATATTCTTACTTAATATTTAAAAATCATAGGTCTTAAGATAAACATGTAAGTTCATAACAACAAAAGTC AAGGAAATAAAGTTGTAAATTCAGAAGCTCTAAACGGAGCAAGTGACAGAAAATTAGAGTCTGAACACCAAAAAAGAAAA AGATGAATTTTGAGATAATAAAAAAACCAAACAAACAAAGAGATAGTAATAGAAAGGACCTGTACACATGGGTAAGTGAA CAACAGAGATGATGTAAAGTCAAAAAAGAAGAGGGATAACAGAGTAGATTACCAGCAACAAATAACGGAGAATTGAAAGA ATAGTCAAAGGCCAAACAGTGAGTTCGCTGGAATACCCTTGGTGCTCGCTGAAAAACTCCATGTTGTGGCCGAAGAGACA TTGGAGAGCAATGGGTTGCCACGATGGAAGAGAAAGGAGGCACCACGAGAATCTACAACACAGCGACAAAGGCTTTTCTG GTTTGAAACCCTTTTCTTTTGACCTGAACACCTTAAATTATACTCGAAGTTCCACTAAAACATTAAAAACTAAAGGTTCT TAGGTTTTTCAAGACACATTATGCTCCTCAATTGTATTATGGTCCTGATTGTGGAATATCATGGTCTTCTGTTTGCTGTT TTTAGACTTATTTTTTTCACACACTTTTTACTTTCCTTTTTTTTTTTCTTCCTTCTTTCTTCACATTTTCAGACTGTTCT TTTTTTTTTAACACGCTGTTTTCCTTTCGTTTTTTATAATCTTTGTTTTGTAATCCTTTTTTTTTTTCTCTTCTCCCATC ATGCTCTATTCTGTTTTTCATCTTCCACTGTGAATGTGAATCTTTGTTTCTAAAATTTGTTCTTCCTTCACATGATCTTT TGTTTTTTTAGCCTTCACCACATACACTATTTTTTTTGTCCCTTTTTGTTTCTAATATTTCTTCTTCCTTTTTGTTCTTC TCCCATCATGCTCTGTTCTGTTTTTCTGCTTCCACTGTGAATGTCCTCTTTCTGTTTCTGTTTTATATTTTCTCTATTCA GTTTTTCATCCTTCTGTTTCTCTTCTTTCTTTCTCTTAACTTGTTTTGTTCTCATTTGAAACTTCTTACACCATGGCTGA ACAAGCTTCAAATTCAACCCCTGTTGTTTCACTTTCAAGGGCTGATCCTGGATGGAAATATTGTCGTCCATTTGAAGAGA ACGATACCAGTCTCTGTGTTTGCAATTTCTGTGCTAAAGTCACAAAGGGTGTAATTACAAGAATGACGGAGCACTTGATG GGGAAGAAAGGGAATGTTGCACCTTGTCTTTAGTATCCAAAAGAGGTCCGAGATGAATTATGGGGATATTTGAAGGATAA GAAGCAGAAGAACAACAAAGCATATCAAAGGGTACCGCCTTGATCTTCTTGACAATCGTGGTGATAGTGATGAATAGCGT GCTTTGGATGAAGGGGCTACGGAGATTGCAACTAGTGGAGAAGAAGTTGAAGGATATGCATCACCCCTGATAATGAGGAT GATGATTAGATTTTGTCTTTTGGGTTTAATTTTGACAGTTTTGAGTTAACATTATATTGTTTTATGCCTTTTGTCGTTTG TTTTGTTTTTATTTTTATGTAGTTGACACAAACAGCTTGTGAAGCTGTTTTATATTGGCACAAACAGCTTGTGACAAGCT GTTTTTTCTATTAATTTTTACTTATTTTAACCGCTATGCAGTTTCCACTATTTGCCCGCGACGCTATCCGCTTTTTTCTC CCCTCTATTGTATAATTTTTGCACTAAATCCTAATAATATTTGTTCTTTGTGTAGCTTGCTTTAGCGTTCATGTGAGAGG ATCAGAGTATACTGGACTTCTCGGATCAGATGATCCAAACTCATTCTTAGTGGGAGTTCCGGATATTGAACTATGA
CDS sequence (LotjaGi2g1v0073400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGCAAAAAGGTCATATTTCAAGTGCACAGGATGAGTAAATACAATAAATTGGAGGTGCTTGAGAAAGCAGAAAA GGATTTAGCAGCTGTGAGAGATCAGCACATATCACGACTAGTCCGAGAATTACAGGGAACAGATTTTTGGAAGCTAAGAC GAGCATACTCACCTGGGATACAGGAGTATGTCGAAGCAGCTACATTCTGCAGTTTCTGTACAAGTGGAACTCTTTTGAAG CTTGATGAGATAAATAACACATTGTTACCACTTAGTGATTCTTCCCTTCAGCCTCTGCAGATAAACATCCTGGACTATCT ATTAGGGCTTGCAGATTTGACCGGAGAGCTGATGCGCTTGGCAATTGGTCGGATTTCTGATGGTGAAATTCAATTTGCTG AGAAGATATGCAGATTTGTACGTGATATATACAGGGAGCTTACACTTGTAGTGCCACATATGGATGATAGTTCTGATATG AAAACAAAGATGGATGTAATGCTCCAAAGTGTCATGAAAATAGAGAATGCTTGCTTTAGCGTTCATGTGAGAGGATCAGA GTATACTGGACTTCTCGGATCAGATGATCCAAACTCATTCTTAGTGGGAGTTCCGGATATTGAACTATGA
Protein sequence (LotjaGi2g1v0073400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSKKVIFQVHRMSKYNKLEVLEKAEKDLAAVRDQHISRLVRELQGTDFWKLRRAYSPGIQEYVEAATFCSFCTSGTLLK LDEINNTLLPLSDSSLQPLQINILDYLLGLADLTGELMRLAIGRISDGEIQFAEKICRFVRDIYRELTLVVPHMDDSSDM KTKMDVMLQSVMKIENACFSVHVRGSEYTGLLGSDDPNSFLVGVPDIEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 197 | 197 | 2.1E-96 | – | |
| PANTHER | 1 | 197 | 197 | 2.1E-96 | ||
| Gene3D | 1 | 100 | 100 | 2.8E-27 | ||
| CDD | 2 | 179 | 178 | 3.39694E-50 | – | |
| Pfam | 2 | 185 | 184 | 1.2E-49 | ||
| SUPERFAMILY | 2 | 187 | 186 | 5.89E-49 | ||
| Gene3D | 106 | 190 | 85 | 2.3E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0073400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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