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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0073800 |
| Transcript ID | LotjaGi2g1v0073800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Abscisic acid-deficient 4; TAIR: AT1G67080.1 abscisic acid (aba)-deficient 4; Swiss-Prot: sp|Q8LFP9|ABA4_ARATH Protein ABA DEFICIENT 4, chloroplastic; TrEMBL-Plants: tr|I3SE79|I3SE79_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0073800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:19239606..19243590) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGGTCAACTCAAGTAGAGTGATACATCCATCCAATAAAGAACTGAATTTGAAGACCCAAAAAGACAAAATATGATG CAAGTTGGGGGAGATGAAGCTTTTGTCCTCCTATTACTTTGCCAACTTATTGGTACTCAGTGAGTGCATTTGCCTGTCTT CCATTCCATACGTCTCTAACTCTTTTGAGTTAGTGGACAATCACTTACCCCTTTCCTCCTCTTTTTCTTGTCTCACTACT TTTGTTTCTCATCAAGTGGAAAGTGCAGCTGTCCTTGCAATTGCATCATAGTATTATTTATGAAGCCATTGTTGTTGTTG AATCCAACTTTGCCTCTAGTCGATTTGCTTCAACCATGGCTTTCTCTTCTTGCTTCTCCCTTTCTCCATTACCTTTCAAG GTGCACATTTTATGTTTGATCATATATGCTCTTAATTAGCATTTCCAATTTGATCTAATTTTTCTGTTTTTTTCAGTTCT TCTGGTTTCTTGCTCTTTATTTTTGTCAGTGTTCAAAGTTTTGAACTTGAATGAATGGGCATTTGTGCATCTTTTGATAT TTGTGATAGATGTTTACAAATTATATGGATCTAGACACCAAGGGGCATGTTGGTGTGAAAAATGAATTTATATGTAAAAG AGTTGACTCTTTGTCTACAGAACCTGTAACTTCATGCAGCATATACAGCCTCTGCCTCATTAAATCACCATAAATTGTTT AATTTAGTAAGTTGTTTGTCTTTTAAATTAGTCCTAGTCATTGATTACAAAAATTGATGATCAATAATTGTGTAGAGAAC ATCTGCTGCAGAGGATCCAAACTCCAATTTTTCCTCTTAAGAAGTACTTTTACTACTTTTACAAAAATTAATGATAAAAA ATTAATGTTCTTGTACACATAGAGTATGCATCTTTTCACTGCTTTCTGTGAAACTTTGTTACATTTAGTCTGAGATATCA AGTAGGGGTTTTGTTAAGGTGATCCTTGCATACTGAACTGAGTTCATCTGCCATTCAAGAAGAATCTGCATAACTTGATA ATAATGTAGTTCATCTATTGTGTTGTATAGATAACATGTGTGTGTGTGTGTGTGTGTCTGGTTGGAAAAGGTTGCTTCTT ACAATTGAGGTTCTGTTTCTTGTAGATTGATCACTTGGGGCAGACTATAACACCTTGTGGAAAGGGGCAAACGTTTCCTT TCCCTATCATCAATAATGGATACCAAAGCATTGTGAGAAATAGAAGAATCAACTTAAAGGGTGATTGGAGTTTCATAGGA GGATCAAGAATGGTTGTGAACCAACAAGTTGTGAGACTGGTTCCTTATCGAAAAGCAAGTCGAGTATATGCTTCATGTAA TCCTTTTATGTGCTACATTTTCTACTTCCATATCTCAAGTTTTATGATGTACCCAGATTCTAATATCTGGTGCTGGTGCA GATTAATTTAAGCACTTTGATACAGTTTTTTGCGTTTAGCTTTTGCACAAACATGTTGTGTTTTTTCACACTGTCATCAA ATCATGTAATTCACACATCTGACATCACTCATCATTTAAGATTTTGGCTTTTCAATTAAATTTTACTGTTAAACTCATTT GATAATGTATTTATTATGATAACTTGATAGAGTAAAAAACTTTCACATACAGTGGATCAAAATTAGATCCACGATAAAAA CTTCATTGGAAGGTATATACAAAAAACCAGATACCATTATTGCCAGCTTCCACAATGGACAATCGTTACATCTTTTAGGC TAGTTCCTTGTGTCTTGATTCCACAAGGTTGGAAATCCTGATTTTATTGTGTTCTTTTCATTTCCCCTCCTATCAGGTCC AAGGGAAGTTATTTGAGAGACTAAAGTCCTCAACCATTCTGGTTAAGCGTGTAAAACAATGCTTTTAATGGATGGATTCT TTTTATTTTGATGCAAAGTATGACCAATGAGTGTGTGTATCATTACCAGTTATTCTATATAGCTAAGGGCGCTTTTCAAT TATCATTAATCATTATCTCTTCTGGCTATTTTATACTCTTTATATTAAGCTCACTGAATATTCCTTCCTTTTGCATAGCT GATAGTGCAGGAATCAGGATCTATTTCACATAACATTGTAACATTGTGACATGGAAATTTTGTATCTATCTCTCTCTTCA TATTTATTCCATATGTGGGACTCTCAGAGAGAGATGACAAAATGTTTTCACTTTACATTATTATGTGACATGAGATGAAC CTAATCTGATTGTGCAGTTATCAGTTCCCATATTCACTTTTCTACCACCATGTTGCAGGGTTATCAGGAGGACCGGAACT TGCTAGTAGCGTCTTTACACTGGCAACAACAGCAGTGCTTCCTTTTTACACACTTATGATTGTGGCTCCAAATTCTGAGC TAGTATGTTTCTTCTGATATTTGGGAAACATTAAAAAAATTTCGTTTCTTGACACATGACAATACCTTCTCACAAGTATA GATAATATGCATAAATTTTCTCTGTTTTATGCAGAAATGCAATGTATGGTATGCTTTTTTCCTTCTTCTATATCTCTGTA TATATTTGTTCTTCAGTACCAAATTGTGTGTTTGGTGAGTTCTGAATCTTCTTATATTCTTCCTCCTCACAATCAAGATC AGACGATCCACATTTTAAGTTGTCATAAGTAATTTTGAATAGTAACTCAAAATGTGAGCTCGGATGAATCAAAATGCATG AATGCATAAATACGGGATTCTCCTGATTGCTGGGAATCCAAATCCCTTCTCATACCATGCACTAGGTGTTTAGTTCTGTG GTTCATATACCTGATTCATTTTCCTTAAATGCAAATTGCAGACTAAAAAGTCAATGGTAAGTGGTGTACCATATGTAGTG CTTGGCATTCTATATGCATATCTGTTGTACCTTTCCTGGACCCCAGAGACAGTTGAACTGATTTTTGCAAGTAAATACTT GCTACCAGAGGTGTGTAGTGTACTAATCAAATAAATTTAAGTTTCTCTTTCAAAAACATTTATATATGATTGTGATATAT ATCTTCTTTTGTCCTTGGTGCAGCTGACTAGTATAGGAAAAATGTTCTCCAGTGAGATGACTTTAGCCTCTGCCTGGGTT CACCTGTTGGCTATTGATCTCTTTGCTGCAAGGTTCTGCAACTTTTCTTCCCCGCCTTCTGCAAAAAATCTGAGACTTGT TTGATTCTACTATCAGTTTTCTGAACTTAACATCTAAAACGTTTTAACGATATGCTTTATGACGATGAAAAACATGTAAC TGGAAATCCAAAAACAGAAATAGAAAATATCTTTGAGAAGTCTGAGATTTAAGTTTCTAAAACTGAAAAGAAGAACTGTT TTTAAGAATAGCAGTTCACGTCAAATGAGTTTTTCTCTTTTTTCAATCTTTTAAAAATAAGAACTGTATTACAGAACATT AATCAAATATGTCCCTATTGTTCCTCCTCACTTTTACTACATTGTTTTTTCATTCTTTTTTAGTCTTCTAATTACATATT TGTGTCTATAAATGCAGGCAGGTTTTTCTAGATGGACTAGAGAATCAGATTGAGACTCGGCATTCAGTTTCTCTTTGCTT GTTCTTTTGTCCTGTTGGGATTCTTACTCATGTCATCACCAAAGCAATTACTGAAACTACTAGGAAGAAACAAGCATGAA TGAGAACCTTAATACTTTTTTTTTATCCATCGGAAAACTGAGAACTCTATTACTGAAAATGATTCACTACCAAATGTAAT TGGAATTTTTTTACTCAATCAAATATCACATTATTAATTTCTTCTATCTCAAGTGCATATAATATTCTGACTGGATGCAT GGATACATTTTTTTTACTCAAGGATCTCGTGCCATAGGACTCTTCATCCCACCCAACCCTTATGTCCCTTAGCTCTTACC ACTTGAGCTAACATCTCTAACATCTCGTGCCATATGAATTAACTCAACTGTCCACAGCGCAGTCT
CDS sequence (LotjaGi2g1v0073800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCTCTTCTTGCTTCTCCCTTTCTCCATTACCTTTCAAGATTGATCACTTGGGGCAGACTATAACACCTTGTGG AAAGGGGCAAACGTTTCCTTTCCCTATCATCAATAATGGATACCAAAGCATTGTGAGAAATAGAAGAATCAACTTAAAGG GTGATTGGAGTTTCATAGGAGGATCAAGAATGGTTGTGAACCAACAAGTTGTGAGACTGGTTCCTTATCGAAAAGCAAGT CGAGTATATGCTTCATGGTTATCAGGAGGACCGGAACTTGCTAGTAGCGTCTTTACACTGGCAACAACAGCAGTGCTTCC TTTTTACACACTTATGATTGTGGCTCCAAATTCTGAGCTAACTAAAAAGTCAATGGTAAGTGGTGTACCATATGTAGTGC TTGGCATTCTATATGCATATCTGTTGTACCTTTCCTGGACCCCAGAGACAGTTGAACTGATTTTTGCAAGTAAATACTTG CTACCAGAGCTGACTAGTATAGGAAAAATGTTCTCCAGTGAGATGACTTTAGCCTCTGCCTGGGTTCACCTGTTGGCTAT TGATCTCTTTGCTGCAAGGCAGGTTTTTCTAGATGGACTAGAGAATCAGATTGAGACTCGGCATTCAGTTTCTCTTTGCT TGTTCTTTTGTCCTGTTGGGATTCTTACTCATGTCATCACCAAAGCAATTACTGAAACTACTAGGAAGAAACAAGCATGA
Protein sequence (LotjaGi2g1v0073800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSSCFSLSPLPFKIDHLGQTITPCGKGQTFPFPIINNGYQSIVRNRRINLKGDWSFIGGSRMVVNQQVVRLVPYRKAS RVYASWLSGGPELASSVFTLATTAVLPFYTLMIVAPNSELTKKSMVSGVPYVVLGILYAYLLYLSWTPETVELIFASKYL LPELTSIGKMFSSEMTLASAWVHLLAIDLFAARQVFLDGLENQIETRHSVSLCLFFCPVGILTHVITKAITETTRKKQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 237 | 237 | 3.3E-107 | – | |
| Phobius | 1 | 92 | 92 | - | – | |
| PANTHER | 1 | 237 | 237 | 3.3E-107 | – | |
| Phobius | 93 | 114 | 22 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| Pfam | 97 | 224 | 128 | 1.8E-38 | ||
| Phobius | 115 | 125 | 11 | - | – | |
| Phobius | 126 | 146 | 21 | - | – | |
| TMHMM | 128 | 147 | 20 | - | – | |
| Phobius | 147 | 177 | 31 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 178 | 197 | 20 | - | – | |
| Phobius | 198 | 208 | 11 | - | – | |
| Phobius | 209 | 227 | 19 | - | – | |
| TMHMM | 210 | 227 | 18 | - | – | |
| Phobius | 228 | 239 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0073800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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