Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0076300
Transcript ID	LotjaGi2g1v0076300.1
Lotus japonicus genome version	Gifu v1.2
Description	50S ribosomal protein L22; TAIR: AT4G28360.1 Ribosomal protein L22p/L17e family protein; Swiss-Prot: sp\|Q92QG5\|RL22_RHIME 50S ribosomal protein L22; TrEMBL-Plants: tr\|I3S3B9\|I3S3B9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0076300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:19949870..19960267) extracted from Lotus japonicus Gifu genome v1.2.

ATAATTATAATCCAATGCCAATCAATATAAATATCTTCATCTCAAACGCAGGCAGTGCGATAAAAGCAGGCAAGACTCAA AGACGCACTAAAACTGAGTTACCCTTACCTTCGTGAGTAGAAGTTGTGCATGGAAGTTGCGAACCTAGAACAAGGAAACA CAATCATCAACACAAGACCTACTAGAAGCAACACTATCTAATAACACTAATCGAAACCGGAAAGAAAGCTTTCAAAGCTT CAGAGTTCCTATTTAGGCACAAATTGACAACAGAATTTCGTTTGCTAAGACACGCATAACTTGAGCTACAGAACTCGGAA TGACACGAAACCAAAGCCAAAATTTCGACAATCGAAAGAGCTACGCTATAGCTTAGGCCATACAGACCCAAAAATTATTT TTGGACAAGGTACCATAACACTAAGTTTCGGCCACTTCTCAAAATAGGGTTTCCCGAACTTTTTCTTCGATCTAAATTAA TTCCTAGGTATTCTTAGGCGATATCTAGGCCAGGGATTCTCTCAGAAAAATTATCGGATCGAAAACTAGAACAGGGGTAT TTTGGTCAAGATTTTTAGCTCGGAAACTCAAAATCGGAATTTCAAAAAATAAATTGGATGAGGTCGATACCCACGACGTT TATGACAACTAATCCTACTGACGCTAAGCTCAGTCGAGAGTTTTTGATTCAAAAAGCGGAACCTCAGCATAAAAATGGGT ATTTGAGCATAATTGAAGTTCGGCGGCATTCGGCGAGATTCGGCGAAATGTAATCCGCTAAACATGCTCTTGGGCATGCA GGGAATAAGTTTAGACAGAGAAATCAAGTTATTTGGACACTTTTACAAAAAGCTCAAAACTTTGAGCACAGAAAGACATA GAGAAAAGCGATAGAATTTACGATCAGAGGTAAGGAAAAGCATCAGTACCTCGAGGCCTACGCGTAGCAACGAATAGAGC GACGATCAGACAAGAATCGGCGAAAATCAATTCTCCCCTCCTTCCTCCTCAAGCTCTCGGCCGTGTGTGTGTGTTTTGGT GATGTTATTTTTTTTTTTCAAGCTATTTATAGAAAATGGAAAACGCGGGAAAATGAATATTTCGTGATTCCGATTTTTCC TGCACATTCCTCTGTGAATTATAAGATAGAATCCGGCGACAGAATTTCAGAACTCGAAACAGGTTTCTTGGAATTTAAGC AAACGATTCACTAACGGTGTTAATCGATTTAACCCGAAAAGTTACTTTTTGCAGTTGATGTCGGATGACAAAACTTCCTT TTGAAGAAAGATTGGAAACATCGAAAGAAATGGGTGTACGCGTGTGGAATCTTCATTTGAAGCTCCGAATAGAAAAAGTC TTCATCGACAGTTTACTTTAAGGTTCTTGAGCTATCAGGGATTTAGTTTCGGCAAACCTCCGAGAATCGAAATAGATCAT TCGTACATTCCAGGGTTTCGTGTCGAAACACTTGTCGTGGAAAGGAATAAGAGAAATTATTATATTCCTCTGAATATTTT TGAATATCGTTTCTACAGTGCTTTAAGAGCAAATTAGCCATTTACTAACGTTTTCACCCTAAGGCGGAAGTGAATGAAAC TCGTGCTATAACCTATAGCGAAATTAGTAATATTCTATGTCGTTTCCTAAATTTTCTTCTTCATAATACTAATCCAAACA TCACACACAAGTCAAGTTCCTCTCATGATTACACATAATCCTATGCGTGAGTTGGAAATTATTTATTTATTTAATTCTAA AATCTTGGGTCTTACAACTTGACCATCACCTTCAATCCTTTTCATTTCAATAAGGAAATCATCCTCATTTTTTTCCACCA CATTTCAAACCTCCCAACATATTCGAGCCCCTTCATAATATCAATCATTTCCTAGTAAGACCAAGCATCGTTGTCCAAGC TAGGAAATTCATGAACCTCACCCCCTACATATTCAACCCGAGGGGTAAGCACAAATTCCCCCTATCATGAACAACCAGAG TGAAAGTCATGTTTTTCCTACAACAAGAAATTAAAAAACCATGAGAAAAGAGTACATTTCGCATCAATTTGGTCCCTACC CAGAAAAACGTAAACCCTAAATTTGGCCCCCACCAACAGAATCCAAAAAATCAACCCATAAATCGCGATTAAGCAAAGTG TTTTGGTCCCCACCCACAAAAACTTACATGCAACCTGAAATTTGGTCCCCACCCACAAATGTATCATCTCAGTCGCGATT AATCAAAGGGTTTTGGTCCCCACCCATGAAATCCCCAAAATACAACCAAGGTTTCCCGATTAAGAAAAGGGTTTTCATTC CCACCCACAAAATCGAATCAGAAAACCATGAGAGAAGAAGCGGTACTTACCTCTTGTCTTAGTGCTTCGTGATTTTGGTT ATCAACGAAAAGGAGCGTGCGACGTCACACCAGAGACTGCAAGTATGAACGACGAAGGGCACCGGCGAAGTAACTCAGGC GATGGCGTAGTAAGACAGTAGTCGACGATTCAAAGCAAGAGAGTACTTGTTACTAATTTAGGGTTCAAATGTGTTAAGAT AGATTGAGGATGTAAACCATATCAAAAATGGAAAAGAGGGGAAAAAAACAAAAAATATTACTACTAATGTTACGTGGAAA AAAAATTGAAAAATGAAAAACTGACATGTCACCACTTACCTGCAAGTTAGCATGTCAAGAAAGCATGGGAACCGATAAAT GGTTGAAAGCCAAACAATTTTATAAGTTAAATGATGAAAAACAACGAAAATTTAGTTGAGGGACAAATACCGATTTCTCA CCTTAGTTCAGAACCCGAAGATTTTTTTTTTTTTTTGAAATTAGGACCCGAAGATATTTAACACATTTTAGAAATGTTTT TCGTGTGGGTTGCACTTGCACGAATAAAATTGATTTTTTTTTTTTGAAATTAAAATTGATTTCTTAATAGTTGTGTATCC CTCTCTCTTGACTGCACTCTCGCAAAAGAGGAAGCAGAAGACCCACATCACTCCCTCCCTCCCTTGCATCTTTGCACGAT CGAAAGTTGATTTCTTAAGGTAGGAAGGTAGAGTTGGTATCAGCAAATTACAACTCTTTCTCTGGGTTGGGTGTGCTACA TTTCAGATTCCCTATGTGTTGATTTATTACTTGGGGTTTTGGGTGCTCTTTTCTTTTTCATGTAATGCCCTGTAACTGTT TGATTTAATTCCTCACTGACTCTCACTATCGCTCACAAACGTTTTTCTCCTCCTTCTTCCTCCTCCGCCAGCGCCGCCGT TTTCTCCGCCCTGCGCGTCTGTCCGCCGCCGTCATTTTGTCCTTCCTCTAGGTCGTCTCTGTCTCTTGTCTCACATCTTC ACGTCTTTCTCCTCCTTGTTCTCGCGTGACCACCGTCGTTTCTTCTTCCTCCAACTGCGTCCACCATCATTTTCTCCTTC CTCCTGGCACTAACCTTTGAGTAACCTACTAACCTTTCTTTTACTTTGGTCCTTGTTTATGTTCTCATATGACAATTGAG TTAATTTAGAGGTTTGTGAGTGTTATCACTTTTTCTTTGGCTTGGGATAGAGACCATAATCTGATTATGATATGAGTTAG AATGTATGAATTTGTGTTTGTAAGTTTAGCCCCTTTTCTTGTCTCATGTTCTCTTAATTTTATGAATATATTTTCTTGTT GCTTTTTGAAAGAAAAAAAATCTAATTTGGATTTTAGCTGTGTCGTGTCCGTGTCGGGGTTTGTGCTTCATGAGGGTTGT ATCCCTAGGCCAGGACTTTGAGTATTAATGATAATTATGTCTTAAACTTTGAGAATTTTTTATTAATGATGATAACACCT TGAGCTTTGAGAAATTAGTCTTGATCATCCCTTATTGTTTATTAGCAACAATTTTCCTTGTACATGCTACCATCTGATGT AGTGGATTGGGGAGGTTTCGGGCAACAATTTTATTAGCAACAATTATTGTTTATTCCCTTGCAGAGAAGAAAGGTCACAA TCATGGTGCAATGGCAGAGACATATTTTCCCAATTCTTCGTCACATTCATAAGGGAGTGGACCATGTCTATCATTCAGCT CCAAAGCTTTCAATTTCTCACTTAAGCTCTTCTTTTCCACAAGGTTAAGAGTTTTCAGATGCGTATTTTGTTTTTCTGGT CACAAGTCACTGAAAGTTGTGAAGGTTCATTAGGAAAAACTTTTCTTTGGTATTGTAGGTCAGTTTCAGGGAGCATGGAC AACAACTTCGCCCAGTATCTCGAGGCCTATGTATCACTGTTTCCAGCATCAGGTAATTGTGTTTTTTATTTTGCATCTTC ATCAGTAATGTATTGAGTTAGAGGTTTTAGTTTAGTCGGGAGGGAGCACATCTCATGTATACCAGAAAGGACGGTATGTT ATGTGCATTTCCAGCCATGATGTAAGTTGTGATTTTAACCAAATTAGAATTAGCCAGTATTCACAAGGTAAACACGGTGG TCTCCTGTAGATTGAGTGAGATTCTCATTGTTTAAGATTATAAGAAAGTGATTTTGCGATTGTTTGAGAAAAGGTTGTTT TTAGAGCTTTTATGTGAAGTAGATACTATTTTGTGCTTGGTTATAATTATAAAAAACACTTTACTTTCTCTCTCATCTAT CATAGGAAGGTTTTTTTGAGAAGCCACTCATACCAGCTTCTAAAAGAAAGCTGATTTTTTTTTGTTGCACATTTTGATTC TTTTTAAAATCAAAATCATTTCTAAATAAATAAAATAAATGAGAACTATTTTTTTTAAATGCTTTTCTGTAAAATAATCA GAAACAAGCATTCTCTTTGAATGTTGCTCTTGTGAGTAAAATGAGCTTCATCAATGTTCTCTATCTTCTTTAGATTCTTT GAGGTTATAGCCGGGCCATGGAAAATAGAATAGAGGATGTACGATCTGTAGCATCTCCAGGATCAAAATTCTTTCCTTCG TCAACTCATTGTAGTTGTCTTGTTAAACACAATCCTAGCATGTCCGGTGATTCCCTTATTTCTTATTCCTACATTCGCTA CATGCGATGGTGACGACGGAAAGACACATTTAGGCATCACCTCTTGGGATCCTGTGATGTCAAAGGTAGAAATAAGAGTT TGAGCACGTAAGAAAATGAAGGAAAATGAGATAAATGGTGGTAAAATATCAGTAACCACTCTAACTGATCTAACTAACGC TGACAATCAGTAGAATATCAAAAGAAAAGATTTTCTAGATCAAGGTTGTCCTTGAGGACTTAATAGCGTGGCCCCTGTCC GCTTCAGGTTGTTATGTAGCATCACAATTTAGTGTAGGTGCCACTGCAGCTGCTAAAGCAGTGAAAATAGGACCTGAACC GGCGCTATCTGGTGAAAACTCAAGAATGCCCTTGGGTCATTTTTGTTAGGGAATTTTAAGGCTTTTGTTTCAGAAACATA TTATAAAGGGTATGATTTGAGAAAGACTTCAGTCCTTTTCACCTTTCTTCCATTCTCTGTCCAAGCTGACCCATCAAGTG TGTTATGAATATGATAGTAGTGAAAGTGATGAAGATGAAGACTTGGATCTAGAAGAGGTTACTGATTCCTGTTTAGGAAA CTTTTATTTGAATTTTAATGTTAGACACAGTTTTGTTTAAGCCTTAGAGGCCCAAACTTCTTCATTACCATAACTTTTGT TGGTATTTACTTGTATGTTCTGTTTTTGATACCTATTACATAATGTAGTTATTTATGAATGTCATACATTTAGAGATTTT TTTAATCATTTTGAGCATTTATGCATGTATGTAATATGTATGTTTTATAAATAAGTTATATAAACTGAAAAAAAAAATAC ATTATAGCGGCCATCCTGCTATGCATTATACCACTAGCATTTTTATGGTCGATCATTACGCACCGCTATTTGAGCTTGAC AACTTTGCTCTAGATCTCTAACAATCCAATGTGTTTCAGTGAAACTGGACACCCTAAGTTTGGCTCTTAAATCAGAGACA ACAACATCAACAGCAATAACAAAAGCCTTATCCTACTAAGTGAGGTTGACAATATTAATCACGCAACGTCATTGCCCTCT ATCAAAACTCTTAAATCAGAGAAACAAAGCATATTCAGATTTAATGAGTGCACGAGCAATCTACTTAGCCAGTGTTAATT ATTTTAAATTTCTATCAATTTATTTCACTTGATGTTTTGTATTTTATGACTTGAATAATTCTATTTCAGGGAATTTCAAG TTCTACTTGGTTGCTTGCAAATTCACCTGAGGAAACACCTGTTTCGTCACCACTAGCCCCACTTTCATTATTGGGTAGTT CAAAAGGTGAAGACCAGAATCAGAAAGCTGTTTCTAAGCCAGAAAATGTTCAAGCTGTATTAAAGGGGATAAAGCAGGTT TGAGATGCCTTATCTCATCATTGTTTGTGATGGATTGCTTTTGGTTTTCTTATATTCATGATTTGGATGTTAGTGCCTAA CGTTCAATCTAACATTAAGGGCATGTTTGATAAAACTGAAAAATGTGAAATTTTAGTCCTGAAAATCTAAAAATTAAATA TATTTTGTGAAAAGATTTTAACTGCTGAAGAGTGCATTAAAGAAAACTACTCCCTCCCATTTAGTATACTAAACTCAGCA ACCGTAAAGGAAACTATTGCCATTTGACAATTTAGTCAGGTAAATAATTGCTGTTTATTCATTCAGTAAAGCCCATGTGC TGAATGTATTCTGCATATCTCACTGAAAATAAATTATTTCATTTTTTGGTTTAAGTATCTTGGGTGAAAGAGTGAATGCG CTAGAGTCTAGGTTGGTGAATTCGGAGGTTGTAATCGTAGGGGTGTGCATGGTGCAGTTTTTTTCAAAAACCAAACCAAA TCTTAAAAAAACCGATTGTGTAGTTTAGTTTTTTAATCCAAACTGTTTAATTATTAACAAAATGGTTCAGTTTCTGGTGA ACTGTTTTAGAACCAGTTCGGAACCAGTTCAAAACCGGTTTTATAACCATACTGGTTTTGAACCTGTTTTAGCACCAAAT GAATGTGCCTTTTTGTAAAGGAGTGCCAGCTAAGTGCAGCGGAAAATCAAAATCTTCAGAAAAAACGAGTTTTGTGAAAC AAAACAGGAAGTCAAATAAAATACTAAAATTATTGCATCGAAACAGCTAAGTGAAGGAGAAAACCCCAAATTCTGAAGAT TTTGGGAACAGCAAAACGATGACCACCAAAACCTCGCACCAATCAAAACGATGACCCTCCCCTGTACTGTCGAACAATTT TTTCGCAACAGCCCTATCATACCCGCCTAACCTGGAGGTCAGAGCAAAATAACAAACGATTTTGTTCGATTTAGTCAAGT TGGCTCTCTTGAGTATGGAAGGCCAATCCATCCACTGTTCAATTTGTTGAGTTTGAGTGTGATGGACGACAATCTTACAT AGAAGAAATTGATACTAGTATTGATCAAACAATATGGTGAATGAAAATTTGGCAAACCCTTTGAGAAGTTGTCCAACTTA AGGCAAACAGGGATGATGGACAAGTATACCAAGGCTTTTGAGTTAATCTGGTCACAAGGGAGCAGGATGGGGGGAACAAC ATTTTGGTTACTTAATAGGAAGCTTATGCCTTTAGATTCAACGGTATTAATCCAAGATCAAGATGTCAGTCTGGTTACCA AACATGCTCAAGAGAGATTTGGTGTAAAATGATATATCATTAGATTTTTTTTTTTTTTTTATAAACATATATCATTAGAT GTGAGTCATGATAGGGTATTATGACACCAATTGACCCATGTTTCCGATGCGACCTAGCAGGAGAGGTTTTGGTAGTTGTT TCGGGATTGAATATCTTGACAGAAACTGGAAATCAGGGAATAGAAATATGAACTGTATATTGATTTATGAGCAACTTCCT TCTGTCACTGCTAGAAGATGTAACATGTAAATGAAAAATAGACTAATAAGCAGAACGTTGAGGATCTGCATCTCTCTTCC TCATATCTCAATTCTTGCCTCACCTCATTTCTTTCATATAGTAACATATTCGTAGATCTCCCTGCATTCCCTCCTGCAAA GTGCAGGTTGGATATGCACAAACATACAGCTATTCTCGCACTTTCCATCCTCAACAGTTTGTACAATTCCCCCAGTACTT TTTCACCTCTTTCTACTATATACCTTTAATAGGAGGGTAGCTTACACATTCTTAATTCAAATTAAGTTTTGAATATTTTC AGTTCATCTTGAAATAATCTAGTATGCTGTAAGCCTTAATCTTTGAAATGCTTTACTTCATGTGCTCCACATGATTGTTT GAAATTTAAATATAACTGCTTACAATTCAATTTTGCACTAAAAAGATGTCTTAATTCATGTGCTTTTCACATAGATTATT TTATGGTCAATGCAGATGCCGACTGCTTTAACCCAGTGTTGTTTATGGTTGATTGTTAAGGTTTCTTATATGCATGATTC AGAAGTGAGTGTGTAAAATTTGAAATGTTGCGTTTAGGTATTTATTTAATTTAAATTTAATTGATAATCACATTTCTAGC ATGCATGTTAAAATGGACAGTATCAACAAGTAGTATTCAGCATGAAAATTGAAAAAATATAATGTTTTGTTTCATTTATG GGGGCCCTCGGCCTACTTGTTAAAAGTCTTTGTTCTTTGTGTCAGAATATAACAACTTTGCAGACAATTCACATCAACTT TTTAACCATTTAAGTGCTTTTGTTGTCACATCTTGTTTTCAATCATATCTTAGAGTCCTAAGAAGGTCAATTTGGTTGCT GCTTTGGTTCGTGGTATGCTCGTTAAAGACGCATTGTTGCAGTTGCAATTGACAGTAAAGCGAGCTGCAAAAACTGTATA TCAGGTAGTAATTCTTTAGTATTTTTCATTACCACCTAAGTGGACTGGACTTCAAAAGCAATATAGTTTTTTGCATTCTA AGTTCTTTTGGGGTAGATGTCAGACTTTGTTAATTTTTCTTTTTCTTTTCATCTTTAGAACTGCACATCCATTTCCATTT TGAGTTTCATTGTCTAATTTCATGACTTTCCCCCTTATATCACTAATAACAAATTCCTTGGAGTCCTTCCTCTTCGATTT TCCATGCTGGTATCCAATATACGCACAAGAACCTGTGATACTTTTCATTTGAGGTCTACTCAATTTCGATGGAGGAAGGT TCTTCTGTTGCCGTTTATAGGCAAAGCAAAATCTAAAGCATTCTTTAAAATTGTGCATGATACAGGTTATTCATTCAGCC AGAGCAAATGCCTCTCATAATCATGGGTTGGATTCAGACCGTCTCATTATTGGTAAAATGTTTAAGTTTGTAATTTTTAG GAGCTGAATGAAGTTTCTGTCACATTGTTTTATTCACACTGATGCGGCATTCCTGTTTCTTCCAGCTGAAGCATATGTCG GAAAGGGATTTTATAAAAAGAGAATATCCATTCACGGGAAATGTAGACATGGGATCATGCACAGACCAGAGTGCAGGCTA ACTGTTGTAGTAAGAGAGATAACCCCTGAAGAAGAGGCAAAGATTGCAAGGCTGAAGGTCCACAACTTTAAGAAGCTCTC TAAGAGGGAGAGACGACTTGTGCCGCATAAGCTTATTGAGACCACTCCTGTTTGGGGCCGCAAAAACAAGCCTACCAGTC AAAACTCGGGTGCTGCAGTTGCATGATTTGGTTCATGGAACAAATTTTCAGCATTATGCCCCTTTTACAAGAACTGGTAA TAAGTGACGAAATTTTTTTTCTATTTAAAAATATGAATAACTAATATACAGTGGCATCTGTTATCATTTTAAGTGATTGA GTACGAACTTTTTTGAGGACCTTGGATTTTTCACCAATTCTGGTGATGATGTTTTTCTTTTGTGCAATAGATACTTTGCA TCACATCCAATGATAAAAACAGTTGAGAAACATGCAAACAAAAGTAACGTTTGGTAGACAGGTGAGAAAGGAACATAAAG GAACATATGAGTTTAGTTCTGTGTTGTTCATGTTTTTAAAAGGGAACGGAACATACCATAAGACTCCTAGAACATAACAC TTTGGTTCCGTAGAAAATGATGGAACGAAAGAGAACGGAACATGATACTCTAATAAAATACAAAATTACCCCTAAGTTTT TTCTTTCATCTTTCCTTTTTTCTACACTTCCCTCTTCTATTTCACATCAAGCCATCTCTCCCAAATTTCTTTTATTCAAT TGCATTCAAATTTTTTTGTGCAAAGCATTTGCTTCCAACCGTAGTATTAATTCCAATCTTCTGTTGACATATATTAGCCT GCAATGTAATGGCTTAATTTTTCTTTGAGTAAAATACACTCACCCGCCCTCAAGGTTTGCAAGAATGACACTCCACCC

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0076300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGCAATGGCAGAGACATATTTTCCCAATTCTTCGTCACATTCATAAGGGAGTGGACCATGTCTATCATTCAGCTCC AAAGCTTTCAATTTCTCACTTAAGCTCTTCTTTTCCACAAGGTCAGTTTCAGGGAGCATGGACAACAACTTCGCCCAGTA TCTCGAGGCCTATGTATCACTGTTTCCAGCATCAGGGAATTTCAAGTTCTACTTGGTTGCTTGCAAATTCACCTGAGGAA ACACCTGTTTCGTCACCACTAGCCCCACTTTCATTATTGGGTAGTTCAAAAGGTGAAGACCAGAATCAGAAAGCTGTTTC TAAGCCAGAAAATGTTCAAGCTGTATTAAAGGGGATAAAGCAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCTTTGGTTC GTGGTATGCTCGTTAAAGACGCATTGTTGCAGTTGCAATTGACAGTAAAGCGAGCTGCAAAAACTGTATATCAGGTTATT CATTCAGCCAGAGCAAATGCCTCTCATAATCATGGGTTGGATTCAGACCGTCTCATTATTGCTGAAGCATATGTCGGAAA GGGATTTTATAAAAAGAGAATATCCATTCACGGGAAATGTAGACATGGGATCATGCACAGACCAGAGTGCAGGCTAACTG TTGTAGTAAGAGAGATAACCCCTGAAGAAGAGGCAAAGATTGCAAGGCTGAAGGTCCACAACTTTAAGAAGCTCTCTAAG AGGGAGAGACGACTTGTGCCGCATAAGCTTATTGAGACCACTCCTGTTTGGGGCCGCAAAAACAAGCCTACCAGTCAAAA CTCGGGTGCTGCAGTTGCATGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0076300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVQWQRHIFPILRHIHKGVDHVYHSAPKLSISHLSSSFPQGQFQGAWTTTSPSISRPMYHCFQHQGISSSTWLLANSPEE TPVSSPLAPLSLLGSSKGEDQNQKAVSKPENVQAVLKGIKQSPKKVNLVAALVRGMLVKDALLQLQLTVKRAAKTVYQVI HSARANASHNHGLDSDRLIIAEAYVGKGFYKKRISIHGKCRHGIMHRPECRLTVVVREITPEEEAKIARLKVHNFKKLSK RERRLVPHKLIETTPVWGRKNKPTSQNSGAAVA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13501:SF9 View details on PTHR13501:SF9 Search for proteins/transripts with this domain View external data on PTHR13501:SF9	1	262	262	6.4E-128	–
PANTHER	PTHR13501 View details on PTHR13501 Search for proteins/transripts with this domain View external data on PTHR13501	1	262	262	6.4E-128	IPR005727 Show description in modal box View details on IPR005727 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	85	108	24	-	–
Gene3D	G3DSA:3.90.470.10 View details on G3DSA:3.90.470.10 Search for proteins/transripts with this domain View external data on G3DSA:3.90.470.10	94	250	157	2.4E-48	IPR036394 Show description in modal box View details on IPR036394 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54843 View details on SSF54843 Search for proteins/transripts with this domain View external data on SSF54843	103	220	118	1.57E-33	IPR036394 Show description in modal box View details on IPR036394 Search for proteins/transripts with this domain View on EBI InterPro Service
Hamap	MF_01331_B View details on MF_01331_B Search for proteins/transripts with this domain View external data on MF_01331_B	110	219	110	19.609	IPR005727 Show description in modal box View details on IPR005727 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00336 View details on cd00336 Search for proteins/transripts with this domain View external data on cd00336	112	216	105	1.32806E-34	IPR001063 Show description in modal box View details on IPR001063 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01044 View details on TIGR01044 Search for proteins/transripts with this domain View external data on TIGR01044	114	216	103	2.0E-22	IPR005727 Show description in modal box View details on IPR005727 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00237 View details on PF00237 Search for proteins/transripts with this domain View external data on PF00237	116	216	101	8.0E-23	IPR001063 Show description in modal box View details on IPR001063 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003735 View details of GO:0003735 AmiGO InterPro QuickGO	Molecular function	Structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.	Subterm of View details of GO:0005198
GO:0005840 View details of GO:0005840 AmiGO InterPro QuickGO	Cellular component	Ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.	Subterm of View details of GO:0043232 View details of GO:0044444 View details of GO:1990904
GO:0006412 View details of GO:0006412 AmiGO InterPro QuickGO	Biological process	Translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.	Subterm of View details of GO:0034645 View details of GO:0043043 View details of GO:0044267 Part of View details of GO:0010467
GO:0015934 View details of GO:0015934 AmiGO InterPro QuickGO	Cellular component	Large ribosomal subunit	The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).	Subterm of View details of GO:0044391

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0076300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi2g1v0076300.1