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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0083100 |
Transcript ID | LotjaGi2g1v0083100.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Mediator of RNA polymerase II transcription subunit 21; TAIR: AT4G04780.1 mediator 21; Swiss-Prot: sp|C0LU16|MED21_ARATH Mediator of RNA polymerase II transcription subunit 21; TrEMBL-Plants: tr|I3SRQ5|I3SRQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0083100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22956757..22961381) extracted from Lotus japonicus Gifu genome v1.2.
GGTAAAATGGCAAAGAGCATGAATGACTGTTACAATTGACGACACTAGGTTATATTAAATTCTTAACTTCTTGGAATTAC GGTTGTCAAACTCAAAATTCAACTCGTGGACTCGATCGAGTTTGTAATTCTACATACTACATAGAGGAATGATGTTAACT CGGCCACAAACTCATTGTTTATGTGACTCAAACTCAGGTAGAATTCAGTAGAATCACCAAGTTTATTATTATTTCAAAAT CAATCCCTAATCCTAGCATCAAAACGACACCGTACAGTAGGATTTTTCATATTCATCCCCGTTGTCTTCGGTTCGCACCT CTCTGTGACCGCGAGCTGCTTCGCCGCTGCAAGGACGCTTCTCCTCCGTCGCTCTCTGTCGATTTTCACTGCCGGAAACT TCTCCTCCATGCACCTTTGCTGTCACAGTGAATGGTGAGTAACTTCTGCGAATGTTCACTTCTTCTCCCCTTCACACCCC TTTGTTTATCTATTCAGTTTTGTGAATTTGGAATTGGAACCTTTAGCTTGATCCTACATTTTGTATGACCTGATCTCTAT TCCGTTTTGCTAATTCCTAACGGAACTGAACCTCGAATCTTCTATCACTGAAGCACTGAACTGTTCTGTTTTGTCTGGTC CGTTAATTCATATCAGAATGTTGATTTGATTTCGTTCAGGGACGGACCCACATAGGGCCCGGGGGTTTCAGTTGAACCCC CTGAAAAAAAAAAATTCAACCTACCCCCTTATAATAGTTTTTTTTTGAACCTCCTGAAAATTTAATATTGCACCCTAGAC CCCAACTCCTCTCTCTCACACTATAGTCACTAGTCAGATCTCTCTCTCCTCTCACAGTCACCACGCACGCACTCAGCACT CACGCTCTCATTCTCTGATTTCCAAGCACCACCACCGGCCACCACCACGCCGGCCGCCGCCGCCGCACCACCACGTGCCA CTCTCCAGCCGTGCGCCCCTGCCTTTGGCTGTGCCTCTGCGGTTCTAATTTCTATGGGCATGGCTGATTTTTTCCTAACC CTAATTTATGTTTTCCCCTAATTTCTAAAGGTTATAATCTTCTAATTCTTCTAATTTCTGTTTATGAGGCAAATGGGGTT TTAGTAAAGTTATGTTCTTTGCAAATAAATTTTGAAATTTTTGCTATAATCATAGGCTATAATCATATTTGTGTATTTCA ATACTGACAACATAGTTCTGATGCATACTTATTGTCTGATGCATACTTATTTCAATACTGACAACATAGTCCAGATTGAG CTGCTTCAATCTTGATGAATATGAATAATCAAGTGAGCAATGGTATATTTTTTTTGACTGATGCACTAGCAAAGGCAGGG TGTGACAGAACTGAGCCTCTTTGGGAGAAGCTGAACTGATCTGAATTTACTCTTGGTCTCTATTATTCGCTGCATGTTTC CTGCTGCTTCGTGCCTCAATTCTGTGTATTCTGCACTGGTGCTTTTTACATCTTAATGTGGTCATGAAAATGTGCTGTTG TTTTGCCTGCTTGCTTTGCTCCCTGCTGGTGGTAACCTGGGACCATTCATTCTCAGTCTCTTACGAATTGGAGTGGACTG TATGCTGGTTTAGTGTGATTGTTTTGTCCCCTGATCTCTTTTTTTGTTTCTGCCCCCTGTAGCTTAGTACCTTTGTGTTT TTAATGTTAATTTTACTTTTTCTGGCCTTGTGATCCTACTCTTGTGTGGATCTTAGGTGCTGTGTTTTGTACTGGTTCCT TGGGCTCTCTTTTTGCTCTTGGTTCCCTTTCTATTTCAATAAAGCTTATGTTTCCAAAAAAATAAATAAACATATTACAG TTGTTTTTAATTATATTTTTATCGATGTGCTCATTTGAAAAATTTGAACCCCCTGACCCCGGGGTCCTGGATCCGCCACT GATTTCGTTAATGTATCTTCAAATGTACTAGTATACCGTCTTTGTACACCATGATTGACAAGTTTTCTTTAGGCCATGTT TGGATTGATGGTAGGGAATGGAATAAGATTGAATGTTTTTATGTTCCATTGTTTTGCTATGTTAAATGAGGATGAAATGG GAAGGAGAGTGATGGAATCCATTCCATCTATTCCACTATTTACCATTAGTTTTCATACCCCCAAGTTGTATGGAATTGGA TGGAATGGAGACACTCTGCAACTATTCAAGCTATAAAATTATTTTTCTATGCCTATTATTTTGCATTTTGGTAAACTCTT ACAAGTTTACGAGTAGGAGTAGGACTACGAGTCGAGTAGACTTTGAGATTATGTAAAATCGCGTGTTTGACAACCTAGTA GCTCCAAAATGCTGTTGGTTTTTGAATATGTGCTTTATTTTGTACATGCATTCATACATATAAAGATATAGGTAACCTTA AAGTTGTTTGTTATTTTGTAGTTGAACTTCATCAAGTCCAAGTTTCCTCCAGAAAGGTGTTTTGATAATGGATATAATCT CTCAGTTACAAGAGCAAGTTAATTTGATTGCGAATTTAGCTTTTAATACCATTGGGACATTGCAAAGGGATGCTCCTCCT AATCGGATCTCACCAAATTACCCTGAACCACCTGCACAACCTACAGAGGATGGGGCAACTTTTTCAGAACAGCCAAAGTT GATGAGTACTGGCTTGGTGAAGGCTGCTAAGCAGGTATATAGCATTTTAGTTTGAAGTTTAAAGGAATGTTTGAAATATG TTTAAAAAGTTTCTCAGAAGTTTTGATTAAGGAAATGTAGGGTCATATATTTTAAAGAATACTAAGGTTGGATAGGTGAT GATATGGTTTCTTGCAGAAAGAATATGTATATTACTTGCATAATAAAGTAATTTGATTGTCCTTTAAGGATAGGCCAAGA AATAAGGCGCGGTATCCAGTTGCATGGTTCTCTAAGAGGATACCTTGAACAGTTCTCGTTTTGAAAATTTTAACTGATAT TGGACATATGCTAAGTACCAAATTAGCCAATCAAGTCTAGCCTATTTATTTCTTAATTTTTTCCCGTTGTACCTCATTAG TCATTATGTATCGTCTTCTGTATGTTTAGTAGACCACTCATGTATGGTCCATTGAAATATGTCCTTGCTTCTTCTGCAGT TTGATGCACTGGTTGCAGCGCTTCCAATAGCTGAGGGAGGTGAAGAAGCACAGCTCAAGAGGATTGCCGAACTACAAGTA TGGAAATCACAGCTCGCTGATTCTTTCTTTATATGTGATTGATTTTGGGATAGTTAGTTTTTTTTTTAATACTATTTGGG GCAGTTAGTTACTGATTATCCAACTGTAACAAGCAGTATAATGTCTATACATTGTTTCTGGATTTTACCTTCCAGGCTGA GAATGATGCAATAGGCCAAGAACTTCAGAAGCAATTGGAAGCTGCAGGTTTATCTCTAGTTTTCCATGTTTATATTGGTT TCTCTTAAATGAAAGTTTAAATTCATGTAAAATAGTGGAAAAAGATGTCTTGGTGCATGATTTTTACATATAGCAAATAG CAGCATTGTGTTTAACACTTAAACTGGAGAAAAATGAATTCAAAATACCGAAGTGGTTTGTTCATGTATAAAGCAACTTG CAGGCTTTACTACTCTAGTGATTTGGTACTGATATGCAGGTATCTAGGATTGGCTTTAAATTCTTATTCAAACTAAGTCT CTCAAAGTAACATGTAAAGTAATATGCATTAACTTCTTTGTGCTGAAAATGCAGTAATTTAAAACAATAAACAAGTTTAT GCATATTTGGATTATAGGAGGTTGAGTTTTTACACTGCTTCTTGATTTAGGTCATGAGACTGCCTAACATGTTGTGTGTT CTTGATGTCAGAGAAGGAATTACATCAGGTTCAGGAATTGTTTAGTCAAGCATCTGATAATTGTTTGAACTTGAAGAAAC CGGATGTCAATTAGTTGCTTGTGTTGCTGGTGAAGCTGGAGACGAACCAGAACCACAGTTTAGCTCATCTTGACATGGAT CTTGGCCTCCTGTGTGGGGATTTTTATCTTTTGCATGAAGTCATTTATACAGGAGATAGCTATATGACCTTTTTAGAAAC AATCCACCGTTAAGATAGTGGTAATTATATTGCTCCTCCCGGAGGAAAGGCTTAATATTACTCTTCGGTGTTTGGATCAT TTTATAGCGTGATAGTTCTTGAGTGAAGCTCTTTAAATGTGTGATTTAAGTATCATTTACTTAGTCGTGCATAGTTTGAT TTGAATGACTATCTGCTACAACAAATACAACTGATTTGGGTGGCACAGATACAGATTCAATTTTATTCTATTTTCAAATT GAAGATTTATCACTTATGCATGATAACTTGTAAGCTATATCTCCACGTAGAATCAGCTTGTTTTGAATTTTATTCTTTTC GTGATAGTAGTGGAATAACCGGTGCGATGTTAAGTAAATAATTTACAAGTGTGTTTTTTCATGAAATTGAGTTTTTAAAC GTGTATGTATATATAAATATTTCAATATGTATTCAGAAATGAATTGAAGATGTATAGCTAATAAAAACCAGACCTTATCA GTCAATCTAACCGGTTGAATCATGAAAATGTCAATTGACCAGTTAATTTGACTTAAAAATTGGTT
CDS sequence (LotjaGi2g1v0083100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATAATCTCTCAGTTACAAGAGCAAGTTAATTTGATTGCGAATTTAGCTTTTAATACCATTGGGACATTGCAAAG GGATGCTCCTCCTAATCGGATCTCACCAAATTACCCTGAACCACCTGCACAACCTACAGAGGATGGGGCAACTTTTTCAG AACAGCCAAAGTTGATGAGTACTGGCTTGGTGAAGGCTGCTAAGCAGTTTGATGCACTGGTTGCAGCGCTTCCAATAGCT GAGGGAGGTGAAGAAGCACAGCTCAAGAGGATTGCCGAACTACAAGCTGAGAATGATGCAATAGGCCAAGAACTTCAGAA GCAATTGGAAGCTGCAGAGAAGGAATTACATCAGGTTCAGGAATTGTTTAGTCAAGCATCTGATAATTGTTTGAACTTGA AGAAACCGGATGTCAATTAG
Protein sequence (LotjaGi2g1v0083100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIISQLQEQVNLIANLAFNTIGTLQRDAPPNRISPNYPEPPAQPTEDGATFSEQPKLMSTGLVKAAKQFDALVAALPIA EGGEEAQLKRIAELQAENDAIGQELQKQLEAAEKELHQVQELFSQASDNCLNLKKPDVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 135 | 135 | 1.6E-45 | – | |
Gene3D | 1 | 129 | 129 | 4.8E-18 | – | |
Pfam | 1 | 126 | 126 | 5.1E-27 | ||
PANTHER | 1 | 135 | 135 | 1.6E-45 | ||
SUPERFAMILY | 1 | 124 | 124 | 3.66E-28 | ||
MobiDBLite | 28 | 53 | 26 | - | – | |
Coils | 91 | 129 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi2g1v0083100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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