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IPR021384

Description

IPR021384 is a Mediator complex, subunit Med21.

<p>The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins.</p> <p>The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11.</p> <p>Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator [[cite:PUB00038543]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 8

Transcript Name Description Predicted domains Domain count
PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X1 [Cicer arietinum] gi|502174021|ref|XP_004515420.1| 4
PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X1 [Cicer arietinum] gi|502174021|ref|XP_004515420.1| 6
PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X1 [Cicer arietinum] gi|502174021|ref|XP_004515420.1| 11
Mediator of RNA polymerase II transcription subunit 21; TAIR: AT4G04780.1 mediator 21; Swiss-Prot: sp|C0LU16|MED21_ARATH Mediator of RNA polymerase II transcription subunit 21; TrEMBL-Plants: tr|I3SRQ5|I3SRQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0083100 9
Mediator of RNA polymerase II transcription subunit 21; TAIR: AT4G04780.1 mediator 21; Swiss-Prot: sp|C0LU16|MED21_ARATH Mediator of RNA polymerase II transcription subunit 21; TrEMBL-Plants: tr|I3SRQ5|I3SRQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0083100 9
Mediator of RNA polymerase II transcription subunit 21; TAIR: AT4G04780.1 mediator 21; Swiss-Prot: sp|C0LU16|MED21_ARATH Mediator of RNA polymerase II transcription subunit 21; TrEMBL-Plants: tr|I3SRQ5|I3SRQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0083100 9
Mediator of RNA polymerase II transcription subunit 21; TAIR: AT4G04780.1 mediator 21; Swiss-Prot: sp|C0LU16|MED21_ARATH Mediator of RNA polymerase II transcription subunit 21; TrEMBL-Plants: tr|I3SRQ5|I3SRQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300 9
Mediator of RNA polymerase II transcription subunit 21; TAIR: AT4G04780.1 mediator 21; Swiss-Prot: sp|C0LU16|MED21_ARATH Mediator of RNA polymerase II transcription subunit 21; TrEMBL-Plants: tr|I3SRQ5|I3SRQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300 9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 12.50