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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0083100 |
| Transcript ID | LotjaGi2g1v0083100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mediator of RNA polymerase II transcription subunit 21; TAIR: AT4G04780.1 mediator 21; Swiss-Prot: sp|C0LU16|MED21_ARATH Mediator of RNA polymerase II transcription subunit 21; TrEMBL-Plants: tr|I3SRQ5|I3SRQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0083100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22957005..22961070) extracted from Lotus japonicus Gifu genome v1.2.
AATCCTAGCATCAAAACGACACCGTACAGTAGGATTTTTCATATTCATCCCCGTTGTCTTCGGTTCGCACCTCTCTGTGA CCGCGAGCTGCTTCGCCGCTGCAAGGACGCTTCTCCTCCGTCGCTCTCTGTCGATTTTCACTGCCGGAAACTTCTCCTCC ATGCACCTTTGCTGTCACAGTGAATGGTGAGTAACTTCTGCGAATGTTCACTTCTTCTCCCCTTCACACCCCTTTGTTTA TCTATTCAGTTTTGTGAATTTGGAATTGGAACCTTTAGCTTGATCCTACATTTTGTATGACCTGATCTCTATTCCGTTTT GCTAATTCCTAACGGAACTGAACCTCGAATCTTCTATCACTGAAGCACTGAACTGTTCTGTTTTGTCTGGTCCGTTAATT CATATCAGAATGTTGATTTGATTTCGTTCAGGGACGGACCCACATAGGGCCCGGGGGTTTCAGTTGAACCCCCTGAAAAA AAAAAATTCAACCTACCCCCTTATAATAGTTTTTTTTTGAACCTCCTGAAAATTTAATATTGCACCCTAGACCCCAACTC CTCTCTCTCACACTATAGTCACTAGTCAGATCTCTCTCTCCTCTCACAGTCACCACGCACGCACTCAGCACTCACGCTCT CATTCTCTGATTTCCAAGCACCACCACCGGCCACCACCACGCCGGCCGCCGCCGCCGCACCACCACGTGCCACTCTCCAG CCGTGCGCCCCTGCCTTTGGCTGTGCCTCTGCGGTTCTAATTTCTATGGGCATGGCTGATTTTTTCCTAACCCTAATTTA TGTTTTCCCCTAATTTCTAAAGGTTATAATCTTCTAATTCTTCTAATTTCTGTTTATGAGGCAAATGGGGTTTTAGTAAA GTTATGTTCTTTGCAAATAAATTTTGAAATTTTTGCTATAATCATAGGCTATAATCATATTTGTGTATTTCAATACTGAC AACATAGTTCTGATGCATACTTATTGTCTGATGCATACTTATTTCAATACTGACAACATAGTCCAGATTGAGCTGCTTCA ATCTTGATGAATATGAATAATCAAGTGAGCAATGGTATATTTTTTTTGACTGATGCACTAGCAAAGGCAGGGTGTGACAG AACTGAGCCTCTTTGGGAGAAGCTGAACTGATCTGAATTTACTCTTGGTCTCTATTATTCGCTGCATGTTTCCTGCTGCT TCGTGCCTCAATTCTGTGTATTCTGCACTGGTGCTTTTTACATCTTAATGTGGTCATGAAAATGTGCTGTTGTTTTGCCT GCTTGCTTTGCTCCCTGCTGGTGGTAACCTGGGACCATTCATTCTCAGTCTCTTACGAATTGGAGTGGACTGTATGCTGG TTTAGTGTGATTGTTTTGTCCCCTGATCTCTTTTTTTGTTTCTGCCCCCTGTAGCTTAGTACCTTTGTGTTTTTAATGTT AATTTTACTTTTTCTGGCCTTGTGATCCTACTCTTGTGTGGATCTTAGGTGCTGTGTTTTGTACTGGTTCCTTGGGCTCT CTTTTTGCTCTTGGTTCCCTTTCTATTTCAATAAAGCTTATGTTTCCAAAAAAATAAATAAACATATTACAGTTGTTTTT AATTATATTTTTATCGATGTGCTCATTTGAAAAATTTGAACCCCCTGACCCCGGGGTCCTGGATCCGCCACTGATTTCGT TAATGTATCTTCAAATGTACTAGTATACCGTCTTTGTACACCATGATTGACAAGTTTTCTTTAGGCCATGTTTGGATTGA TGGTAGGGAATGGAATAAGATTGAATGTTTTTATGTTCCATTGTTTTGCTATGTTAAATGAGGATGAAATGGGAAGGAGA GTGATGGAATCCATTCCATCTATTCCACTATTTACCATTAGTTTTCATACCCCCAAGTTGTATGGAATTGGATGGAATGG AGACACTCTGCAACTATTCAAGCTATAAAATTATTTTTCTATGCCTATTATTTTGCATTTTGGTAAACTCTTACAAGTTT ACGAGTAGGAGTAGGACTACGAGTCGAGTAGACTTTGAGATTATGTAAAATCGCGTGTTTGACAACCTAGTAGCTCCAAA ATGCTGTTGGTTTTTGAATATGTGCTTTATTTTGTACATGCATTCATACATATAAAGATATAGGTAACCTTAAAGTTGTT TGTTATTTTGTAGTTGAACTTCATCAAGTCCAAGTTTCCTCCAGAAAGGTGTTTTGATAATGGATATAATCTCTCAGTTA CAAGAGCAAGTTAATTTGATTGCGAATTTAGCTTTTAATACCATTGGGACATTGCAAAGGGATGCTCCTCCTAATCGGAT CTCACCAAATTACCCTGAACCACCTGCACAACCTACAGAGGATGGGGCAACTTTTTCAGAACAGCCAAAGTTGATGAGTA CTGGCTTGGTGAAGGCTGCTAAGCAGGTATATAGCATTTTAGTTTGAAGTTTAAAGGAATGTTTGAAATATGTTTAAAAA GTTTCTCAGAAGTTTTGATTAAGGAAATGTAGGGTCATATATTTTAAAGAATACTAAGGTTGGATAGGTGATGATATGGT TTCTTGCAGAAAGAATATGTATATTACTTGCATAATAAAGTAATTTGATTGTCCTTTAAGGATAGGCCAAGAAATAAGGC GCGGTATCCAGTTGCATGGTTCTCTAAGAGGATACCTTGAACAGTTCTCGTTTTGAAAATTTTAACTGATATTGGACATA TGCTAAGTACCAAATTAGCCAATCAAGTCTAGCCTATTTATTTCTTAATTTTTTCCCGTTGTACCTCATTAGTCATTATG TATCGTCTTCTGTATGTTTAGTAGACCACTCATGTATGGTCCATTGAAATATGTCCTTGCTTCTTCTGCAGTTTGATGCA CTGGTTGCAGCGCTTCCAATAGCTGAGGGAGGTGAAGAAGCACAGCTCAAGAGGATTGCCGAACTACAAGTATGGAAATC ACAGCTCGCTGATTCTTTCTTTATATGTGATTGATTTTGGGATAGTTAGTTTTTTTTTTAATACTATTTGGGGCAGTTAG TTACTGATTATCCAACTGTAACAAGCAGTATAATGTCTATACATTGTTTCTGGATTTTACCTTCCAGGCTGAGAATGATG CAATAGGCCAAGAACTTCAGAAGCAATTGGAAGCTGCAGGTTTATCTCTAGTTTTCCATGTTTATATTGGTTTCTCTTAA ATGAAAGTTTAAATTCATGTAAAATAGTGGAAAAAGATGTCTTGGTGCATGATTTTTACATATAGCAAATAGCAGCATTG TGTTTAACACTTAAACTGGAGAAAAATGAATTCAAAATACCGAAGTGGTTTGTTCATGTATAAAGCAACTTGCAGGCTTT ACTACTCTAGTGATTTGGTACTGATATGCAGGTATCTAGGATTGGCTTTAAATTCTTATTCAAACTAAGTCTCTCAAAGT AACATGTAAAGTAATATGCATTAACTTCTTTGTGCTGAAAATGCAGTAATTTAAAACAATAAACAAGTTTATGCATATTT GGATTATAGGAGGTTGAGTTTTTACACTGCTTCTTGATTTAGGTCATGAGACTGCCTAACATGTTGTGTGTTCTTGATGT CAGAGAAGGAATTACATCAGGTTCAGGAATTGTTTAGTCAAGCATCTGATAATTGTTTGAACTTGAAGAAACCGGATGTC AATTAGTTGCTTGTGTTGCTGGTGAAGCTGGAGACGAACCAGAACCACAGTTTAGCTCATCTTGACATGGATCTTGGCCT CCTGTGTGGGGATTTTTATCTTTTGCATGAAGTCATTTATACAGGAGATAGCTATATGACCTTTTTAGAAACAATCCACC GTTAAGATAGTGGTAATTATATTGCTCCTCCCGGAGGAAAGGCTTAATATTACTCTTCGGTGTTTGGATCATTTTATAGC GTGATAGTTCTTGAGTGAAGCTCTTTAAATGTGTGATTTAAGTATCATTTACTTAGTCGTGCATAGTTTGATTTGAATGA CTATCTGCTACAACAAATACAACTGATTTGGGTGGCACAGATACAGATTCAATTTTATTCTATTTT
CDS sequence (LotjaGi2g1v0083100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATAATCTCTCAGTTACAAGAGCAAGTTAATTTGATTGCGAATTTAGCTTTTAATACCATTGGGACATTGCAAAG GGATGCTCCTCCTAATCGGATCTCACCAAATTACCCTGAACCACCTGCACAACCTACAGAGGATGGGGCAACTTTTTCAG AACAGCCAAAGTTGATGAGTACTGGCTTGGTGAAGGCTGCTAAGCAGTTTGATGCACTGGTTGCAGCGCTTCCAATAGCT GAGGGAGGTGAAGAAGCACAGCTCAAGAGGATTGCCGAACTACAAGCTGAGAATGATGCAATAGGCCAAGAACTTCAGAA GCAATTGGAAGCTGCAGAGAAGGAATTACATCAGGTTCAGGAATTGTTTAGTCAAGCATCTGATAATTGTTTGAACTTGA AGAAACCGGATGTCAATTAG
Protein sequence (LotjaGi2g1v0083100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIISQLQEQVNLIANLAFNTIGTLQRDAPPNRISPNYPEPPAQPTEDGATFSEQPKLMSTGLVKAAKQFDALVAALPIA EGGEEAQLKRIAELQAENDAIGQELQKQLEAAEKELHQVQELFSQASDNCLNLKKPDVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 1.6E-45 | – | |
| Gene3D | 1 | 129 | 129 | 4.8E-18 | – | |
| Pfam | 1 | 126 | 126 | 5.1E-27 | ||
| PANTHER | 1 | 135 | 135 | 1.6E-45 | ||
| SUPERFAMILY | 1 | 124 | 124 | 3.66E-28 | ||
| MobiDBLite | 28 | 53 | 26 | - | – | |
| Coils | 91 | 129 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi2g1v0083100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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