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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0086300 |
| Transcript ID | LotjaGi2g1v0086300.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial transcription termination factor family protein; TAIR: AT4G14605.1 Mitochondrial transcription termination factor family protein; Swiss-Prot: sp|F4JVI3|MTEF5_ARATH Transcription termination factor MTERF5, chloroplastic; TrEMBL-Plants: tr|A0A0B2SHC2|A0A0B2SHC2_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0086300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:24899424..24902688) extracted from Lotus japonicus Gifu genome v1.2.
AATTTGTACCCAAAATCACTCAATCATTGAACATTTCAGTATTTCACCTTATCCCGTCGTGACTAGCGTATCGTTGTTCT AACTGTAGTCCGCACGCTCAGACACAGTGATAGTTTTCTTTACAGTATCTTGACGAGTGAGGGAGCTTCCTCTGCAACAT ACAATGATGAAGGCTTTCTCCTCATTTCAACCGCCCCAGCATTTCCCTTGCACAAGATTTTTCTCTTCCATTACCACTAG GTACTCTTTTTTCACTTTTCATTCCCTGCACCAATTTTCATTTCTAGATGTATGTTTATCCTTTCAATATACCAGTTTCC ACCCTCAAAGAGAATCAAGGTGGAGGAGATAGTATAGATAGTAGAGCATTTACTGTTTCTATTTACCATTTCAATTTACC AATTTCCATTTTGGGTTCTTTTTTTTCTGTTTTACTGTCTAATCTATTTACTGATTCAAGCTTTTCCATTCTCTCCTGTT TTTATTTCCTTTTTATTGTTCTCATACTATAGATAGTAGAAGCTTGAATTTTTTCTTTTTTACAGCAGGACTCAACTTTC ATGTATCAATGTTTGTTTTTTTTTATACACACTCTAGTGGATTCCTTGCATCAATGTCCATTTCATCAAGTATGTTTAAG TTTAACCTTTCAATTTTGCATATTTCAATTTTAAAGACCCTCAAAGAGAATCAATGTAGAGGAGGGAACTTAGGTGATTG GTGTTTTGGGTTTGCGGATACAGAATAGGTAATGCAAATTCAAGTGAATTAACTAATTTGAAAAAAGAGCCCATTCCTGC CGAGGGAACGGAGTAAGGCCTTGACCGTATTATACCTAAAGCTAGCCCTTGAGCAGCAAGGGAGATAGAGCTACTGCGTG TTCCTAGTCAATTTCCCCCATTACACGGTCCCCTTAATACTACGACGTGAAACAGGCATAGAGACCAACCATAGGGCATC GCTAAATTGTGAATCCCTTGCTACATCAGTGTGCTTCTTCCTTTTGCTTTTCTGTCTCACTGTCTATTTACTGATGCAAG CTTTTCCATTCTCTCTTATTTCTTGTTCCTTTTTATTTTTCTGATATTATAGAAAGTAGAAGTTTGAACTTTTCATTTTT ACAGCAGGACTCAACTTTCTTTTCATGCAAAGGCTTTCTATTGCCAGGCAAAATCTGGTAAGTATTTTCTCTAAATACAA TATGAAAAACTGGATGATGCTGTTGGTATGAGGTTAATGTACTATTCCAATGAGCATAGATCTTTCATTGTGTTTCTTAC TCAGGCATAGATGGGTCATTGAATTTGAGAGTGATGCCACCCACCCTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGT GTTGTGCTTGTTTTTCAAGAAACAAGGTTTGAGCAACGCGGTTGCAGCAAGAACCATCAACAAGTCAGATCTTTTTATTG ATCATCTTGTCTCAAAGCTTCACTCCAAGCACAAATCTCGATACCTTGCAGGTTTGGTTGCCACAAATTAATTACAGCTA TTTCATTACTTTTTTCACATATTGGATCTTCACGATCACAGTCCTGTTGTCATAAACAGGGAGAGAGCTTACAACTCTAG AGATCAGAGATGCTCTTATTCCTTATCTTGAATCCCTTTTGGAAGAGCATGGCGACGTTCTGGGGGATTTAGTGGAAAGC TATCCAAACCCACCCGTGAAAGAAAAATCGACTTTGGCAATTCCTACTACTAGTAACGTGGTAGACTCTAAGAAGCTCAA AGCTGTGTCTCGAGTCGATGAGATAGACCCAGCTGCCGGCAAGCTTCGCCCTCATATTGTGTATCTCATGGAGCTTGGAA TGGATATTGAGCAGGTTAGGAGTATTATACGACGATTCCCAGCTTTTGCCTACTATAGCTTGGAAGGTAAAATTAAGCCA GTGGTTGAGTTTTTCCTTGAACTTGGAGTTCCAAAAGAAAACATTGCCACCATCCTCACTAAAAGGCCTCAATTGTGTGG AATCAGTCTATCTGAAAATCTTAAACCAACCATGAAGTTCTTAGAGTCTTTCGGTGTTGACAAGAAACAATGGCCGAAAG TGATATACCGCTTCCCGGCCCTGCTAACTTATAGCAGGCAGAAGGTGAGGGAAAGTGTGGATTTTCTCTATGAATTTGGC CTCTCAGAAGAGAGTATAGGTAAGATCTTAACTCGCTGCCCCAATATTATTAGTTACAGTGTAGAGGACAATCTCCGACC CACAGCTAAGTACTTCCGCTCTTTGGGGGTTGATGTTGGCATTCTCCTATTCAGGTGCCCACAAAATTTTGGTCTGAGCA TTGAGGCCAATATAAAGCCTGTAACAGAATTTTTCTTGGAGCAGGGATACACTTTGGAAGAAATTGGGACTATGATTTCA AGATATGGAGCTCTGTATACTTTCAGCTTGACTGAGAATTTGATGCCAAAATGGGAATTCTTTATGACTATGGATTACCC GAAATCTGAGCTGGTTAAATTTCCTCAGTTTTTTGGGTACAGTCTAGAGCAGAGGATTAAACCAAGATATGCTCGAGTGA AAAAATCTGGAGTGAGGTTACTGCTGAACCAGATTCTTTCACTGTCAAGCAGCAATTTTGAGAAGGCCTTGAAAAAGAAA ATGGAGAAAATGCAAGCTGGTTAAGATTCCAGTGAAGCAGCAAGGTTTGTTCAATCCGATAATGGAAATTGAAACTTTCA GGCAATGTTTGAGGTTAGAAGATGCTCAACTTCATGATTGTTATCTTGGATTGGACCAATGGCACTACAACTGCCGATTT CTATGAAGTGAAAAGTTGCAGTTGTTCTGGAACATGGTCAATCGTTACCTTCAGGAAATACAGCTCATGCCCTTGAACTT CAGCATTAAGCTGCATTGGATTGATTTCAGAGCATGCTAGCTGCTGAAACCAAAAAAATTAACAGGGTTTAATGCGCGGC TTTGGTCAGCTCTACATGACAATTACTACTTAGTGGGATAAGGCTTTTATTGTATTGTTGATGTGATTGTTTGTATATCC AGTATTTACTTGTATTTCTTGGTAAACTATATTCAGACAACAATTTTTTAGTACAAGCAAAGGGGTAAAGAAAGTCACCT TGCCCCCTTATTTGATAAATTTTATGTACTCTTTTTTCCTTTATACATGTAATTTTAAGGTTTTGACATCTTTATTATAA GACCACTTTTGAATGTTTTTCTTGTTCCTAAATATAAGTCCATTTACAATATCAATGAAGCATTA
CDS sequence (LotjaGi2g1v0086300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGGCTTTCTCCTCATTTCAACCGCCCCAGCATTTCCCTTGCACAAGATTTTTCTCTTCCATTACCACTAGGAC TCAACTTTCTTTTCATGCAAAGGCTTTCTATTGCCAGGCAAAATCTGGCATAGATGGGTCATTGAATTTGAGAGTGATGC CACCCACCCTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGTGCTTGTTTTTCAAGAAACAAGGTTTGAGCAAC GCGGTTGCAGCAAGAACCATCAACAAGTCAGATCTTTTTATTGATCATCTTGTCTCAAAGCTTCACTCCAAGCACAAATC TCGATACCTTGCAGGGAGAGAGCTTACAACTCTAGAGATCAGAGATGCTCTTATTCCTTATCTTGAATCCCTTTTGGAAG AGCATGGCGACGTTCTGGGGGATTTAGTGGAAAGCTATCCAAACCCACCCGTGAAAGAAAAATCGACTTTGGCAATTCCT ACTACTAGTAACGTGGTAGACTCTAAGAAGCTCAAAGCTGTGTCTCGAGTCGATGAGATAGACCCAGCTGCCGGCAAGCT TCGCCCTCATATTGTGTATCTCATGGAGCTTGGAATGGATATTGAGCAGGTTAGGAGTATTATACGACGATTCCCAGCTT TTGCCTACTATAGCTTGGAAGGTAAAATTAAGCCAGTGGTTGAGTTTTTCCTTGAACTTGGAGTTCCAAAAGAAAACATT GCCACCATCCTCACTAAAAGGCCTCAATTGTGTGGAATCAGTCTATCTGAAAATCTTAAACCAACCATGAAGTTCTTAGA GTCTTTCGGTGTTGACAAGAAACAATGGCCGAAAGTGATATACCGCTTCCCGGCCCTGCTAACTTATAGCAGGCAGAAGG TGAGGGAAAGTGTGGATTTTCTCTATGAATTTGGCCTCTCAGAAGAGAGTATAGGTAAGATCTTAACTCGCTGCCCCAAT ATTATTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTACTTCCGCTCTTTGGGGGTTGATGTTGGCATTCT CCTATTCAGGTGCCCACAAAATTTTGGTCTGAGCATTGAGGCCAATATAAAGCCTGTAACAGAATTTTTCTTGGAGCAGG GATACACTTTGGAAGAAATTGGGACTATGATTTCAAGATATGGAGCTCTGTATACTTTCAGCTTGACTGAGAATTTGATG CCAAAATGGGAATTCTTTATGACTATGGATTACCCGAAATCTGAGCTGGTTAAATTTCCTCAGTTTTTTGGGTACAGTCT AGAGCAGAGGATTAAACCAAGATATGCTCGAGTGAAAAAATCTGGAGTGAGGTTACTGCTGAACCAGATTCTTTCACTGT CAAGCAGCAATTTTGAGAAGGCCTTGAAAAAGAAAATGGAGAAAATGCAAGCTGGTTAA
Protein sequence (LotjaGi2g1v0086300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKAFSSFQPPQHFPCTRFFSSITTRTQLSFHAKAFYCQAKSGIDGSLNLRVMPPTLLAAEKEEAKAVLCLFFKKQGLSN AVAARTINKSDLFIDHLVSKLHSKHKSRYLAGRELTTLEIRDALIPYLESLLEEHGDVLGDLVESYPNPPVKEKSTLAIP TTSNVVDSKKLKAVSRVDEIDPAAGKLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENI ATILTKRPQLCGISLSENLKPTMKFLESFGVDKKQWPKVIYRFPALLTYSRQKVRESVDFLYEFGLSEESIGKILTRCPN IISYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIEANIKPVTEFFLEQGYTLEEIGTMISRYGALYTFSLTENLM PKWEFFMTMDYPKSELVKFPQFFGYSLEQRIKPRYARVKKSGVRLLLNQILSLSSSNFEKALKKKMEKMQAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 40 | 470 | 431 | 3.8E-223 | – | |
| PANTHER | 40 | 470 | 431 | 3.8E-223 | – | |
| Gene3D | 163 | 254 | 92 | 6.4E-14 | ||
| Pfam | 191 | 373 | 183 | 5.7E-35 | ||
| SMART | 205 | 236 | 32 | 8.5E-6 | ||
| SMART | 241 | 272 | 32 | 4.3E-5 | ||
| Gene3D | 255 | 469 | 215 | 9.6E-45 | ||
| SMART | 277 | 307 | 31 | 2.0E-4 | ||
| SMART | 312 | 343 | 32 | 2.6E-7 | ||
| SMART | 345 | 376 | 32 | 0.19 | ||
| Pfam | 349 | 459 | 111 | 1.3E-21 | ||
| SMART | 381 | 412 | 32 | 0.0095 | ||
| SMART | 413 | 444 | 32 | 0.0078 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded DNA binding | Interacting selectively and non-covalently with double-stranded DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0086300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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