Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0087700 |
| Transcript ID | LotjaGi2g1v0087700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S21; TAIR: AT3G27160.1 Ribosomal protein S21 family protein; Swiss-Prot: sp|P82024|RR21_SPIOL 30S ribosomal protein S21, chloroplastic; TrEMBL-Plants: tr|I3RZW2|I3RZW2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0087700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:25569804..25572656) extracted from Lotus japonicus Gifu genome v1.2.
GATTTTTGGTTGAATGAAAGCCACTTTAAAAAAATAAAAAAAGAACCAATTTAAATTAAACTCTATATTTCACGGACTGA AAATATATTTATCCAAAAACAGTATTCGAAATCCACGAGTTGCCCCGAGAGCTTGGCCTTAGCCATTTACCTTAGCTATC ATTGGATGACACACTCGTGAAACAAAACGTAAGTTTCCATTGTCGTATCATTCATTGTCTAATTTCATTCAGATAACATA CCCTGCGTTTTCGCCTCATCCAATCCAATTCAATTCAATGGCTGTCTCAACTTCTTCACTCCCCAACTTCCTCTCCTTCC TGTTACCCACAAAACAACCGTCACCACCGCCGCAACTGAACTTGCCTTCATCATCGCCGCTCCCTTCTCACACCCTCAAG ATGATGAAACCCTCTCACAACTCAGCGTCTCCAACGACACCACGCCGCGACGGTCCTTCTTGTGACGAACTGTCTTCCGT GGTGTGCCCTTCCTTGGCGTACTCGAACACGTTATTCTTCCGATCCGCGTACAACGTCCAGGTGGTGGTCGGAGAGGAAG AGGGGGAGGAGAGGCTGCTCAACAGGTTCCGGCGAGAAGTGATGAAGGCCGGTGTCATTCAAGAGTGCAAGAGGAGAAGG TTCTTCGAGAACAAGCAGGACGAGAAGAAACGCAAGCACCGTGACGCTGCTAAACGTGCTAGTCGTGCAAGGTACCAAAT TTTCTTCTTCTTGTTCTTCTTCCTTTTTTTATTAATAAAATTAGTAAGTAAATAAACTGGTTTGTTTCTGTTGGAGTTAA TAATTTTTTGCATCAGTGATTCATGTTGGGTGGATTATGAGGCTTGTATGGAAATAAATTCTTAAAATTAGTGGGATCCT GAGTTAGGTACATATATTTATACCAAACATGTGTTAGTTTGGGACTTGGGTCTCTTAAAGCATGAGGTTCTGGATTATGT GAGAAGGTAATTGAGCTTTATGGTGTAGACTGTAGCGTGATCCATATAGCCGGCCTTACTTAGGCTTGTTGTTGTTGTTT TGGGGGGCGGTGTCCAGGAAATTTTGTATCTATGGTTAATGTAGCATTTGGGTGACAAGTGAAATTAGGGCAAAGCAAAA CATATAAAAGTGGGCAAGGCATAATAGAGTTTCTGTTCAACTGCATTAAAGATTAAAAACACATATCGTACTGGATTGAT TTGTACACATGAATACTACATAATGCGTACTGGATATGGGTAGTATTCAGTATGTATTCAACCCTAAATTTTGAGCATGC TTTAGAGGTTTGGGCGAATGTTGCTAACTTGTTGTTTTTCTATGTTTGTGTGGAGCTTTGTACTGTCTAATGTTTTCTGT AGCCCTTGGAATGGGTCAATGGAATTTCTACTTGGTGCCTCACTAGGTCAATCTAGTATTAGTTGGCAGCAAAGTTGGGC ACGTTCTTCTGGTCTGGTTAAATATTTCCCATAAACAAAGATTATTTGATACTTGTCTGCCTTACATCATTTTCAGGCGC CCTTTCACTAAATTTTCAGCACAGAACAAGCAGGATGTCCCAACAACAACCAAGAAGGTAAAAGACGACGATAACTGGGA CCTTCCTGAAGGAGACTTATTGACCAATTGATTCTCCCTAAGCTCTGTAGGTTTTCTTCACATTCTACAGTGAGAGGTTT TTTCCAGCTTGTAAGTTCAGTTATGTAAAATGACTTGGTACATTTTCTATATGTTTAATAATGTGATGTAATTTGTTTTT ATTTTTTGTATATTAAACTTTGTTTCGACATTGGTTCTTTGAAATCTAGCATCAACCAGTTTTCTCCCTCTTGCATCAAT TTAGGTTTCATTGTGTAATTCACCAGACATGCAAGAGTTACTGAGTTGATATGAAAAAGAAGAGTTATTACATTATAGGA ACATCAAACATGTCTTCCACTTTGAACAGTGAAATAATTCTTGGTAGAATAATACATGCTAAAATAAGATGGTAATCTGT TCATAATTTAAGTTGTTATCTTGAAGGCAGTGTATGTTTGAAATAATAGAAGTATATTGAAATTTCCCTTTGTTTCAAGT ATATTCCTATACCTGTTAGTGTGAATTCTATTTTCTTGCTATTAATGAGATAAAAAAATCAAGTCCAAGAAATATTGCCC ATATGCATTTCCTTTCCCTTTTATCCTCTGTTATCTACCGTGTTTTTATTTTCATGCTTTGGTTCTTCATCCCTTTGAGC TAGATCTTTGAAGTTACGGAGACACACTTAACTTGTATGTACTATCATTCAGCGCTTGTTAGTCTGATCAATGGTCTATT GTCCTATGATGTTGGTGAAATTCTTGATCACATTGGAACTACACATTCTTAATTGTGAAGTTAGACACAGGGTATCTAGA TTACCCATTACCGTACTACGGATCATTACGAAGCAATTTGGCTGTTTTGTAGAGCTAACAACCAATAGTTCCAACTGATT TGTAGTCGTAATCAAGGGAAGAAAATTTGAAACAACCAGCAGCAGTAGTTCTGAAGTCTTAGACATACCCTCCCAAATTA TTTGAAAGTAGATTTTGGCATGTTTAGAGGTTTCATAATTTTTACTAACAGTATAGTAAAGAACAATGGTCCAAACTAAA CATTGCGATGCTATTGTTTAACGCGTGAGCTGACTCATCACTACAAAGCAGCAATTCAAATTCTTGAATTTCACTGGGCA GCCGGCTGAGCTTTGCTTTAGAAATCTTGATAATAGTTGCATGCATGGTATAATGAAACACATGCATCCTCATGCAGATG ACAGAACCACCTTATTGTATGTTTTGATGGAGGCCTGTGGACAAAAAGAGAAG
CDS sequence (LotjaGi2g1v0087700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTCTCAACTTCTTCACTCCCCAACTTCCTCTCCTTCCTGTTACCCACAAAACAACCGTCACCACCGCCGCAACT GAACTTGCCTTCATCATCGCCGCTCCCTTCTCACACCCTCAAGATGATGAAACCCTCTCACAACTCAGCGTCTCCAACGA CACCACGCCGCGACGGTCCTTCTTGTGACGAACTGTCTTCCGTGGTGTGCCCTTCCTTGGCGTACTCGAACACGTTATTC TTCCGATCCGCGTACAACGTCCAGGTGGTGGTCGGAGAGGAAGAGGGGGAGGAGAGGCTGCTCAACAGGTTCCGGCGAGA AGTGATGAAGGCCGGTGTCATTCAAGAGTGCAAGAGGAGAAGGTTCTTCGAGAACAAGCAGGACGAGAAGAAACGCAAGC ACCGTGACGCTGCTAAACGTGCTAGTCGTGCAAGGCGCCCTTTCACTAAATTTTCAGCACAGAACAAGCAGGATGTCCCA ACAACAACCAAGAAGGTAAAAGACGACGATAACTGGGACCTTCCTGAAGGAGACTTATTGACCAATTGA
Protein sequence (LotjaGi2g1v0087700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSTSSLPNFLSFLLPTKQPSPPPQLNLPSSSPLPSHTLKMMKPSHNSASPTTPRRDGPSCDELSSVVCPSLAYSNTLF FRSAYNVQVVVGEEEGEERLLNRFRREVMKAGVIQECKRRRFFENKQDEKKRKHRDAAKRASRARRPFTKFSAQNKQDVP TTTKKVKDDDNWDLPEGDLLTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 179 | 174 | 1.7E-57 | ||
| MobiDBLite | 14 | 63 | 50 | - | – | |
| MobiDBLite | 32 | 56 | 25 | - | – | |
| Hamap | 86 | 142 | 57 | 12.009 | ||
| TIGRFAM | 87 | 143 | 57 | 1.0E-12 | ||
| Pfam | 88 | 140 | 53 | 1.3E-17 | ||
| PRINTS | 98 | 107 | 10 | 5.6E-5 | ||
| Gene3D | 101 | 139 | 39 | 1.4E-6 | ||
| PRINTS | 110 | 120 | 11 | 5.6E-5 | ||
| PRINTS | 122 | 132 | 11 | 5.6E-5 | ||
| MobiDBLite | 125 | 182 | 58 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi2g1v0087700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…